RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 DOCK9Q9BZ29 2069 aa2.61□□□□□ -1.99
NUP88-208ENST00000574087 ARAP2Q8WZ64 1704 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 LTN1O94822 1766 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 KDM3BQ7LBC6 1761 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 KIDINS220Q9ULH0 1771 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 TRAV8-6A0A0B4J262 113 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 ARRDC5A6NEK1 342 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 F5H5P2 479 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 H3BQ15 152 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 GABARAPH6UMI1 98 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 ISLRO14498 428 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 FFAR1O14842 300 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 GSTZ1O43708 216 aaPredicted RBP2.6□□□□□ -1.99
NUP88-208ENST00000574087 ZNF286BP0CG31 522 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 SLC25A4P12235 298 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 TPT1P13693 172 aaKnown RBP2.6□□□□□ -1.99
NUP88-208ENST00000574087 PPIBP23284 216 aaKnown RBP2.6□□□□□ -1.99
NUP88-208ENST00000574087 NFYBP25208 207 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 CRYBB3P26998 211 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 OPRM1P35372 400 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 DAPP51397 102 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 POLR2JP52435 117 aaKnown RBP2.6□□□□□ -1.99
NUP88-208ENST00000574087 GFERP55789 205 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 YPEL3P61236 119 aaPredicted RBP2.6□□□□□ -1.99
NUP88-208ENST00000574087 PPP1CAP62136 330 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 DIAPH2-AS1Q14236 149 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 ZNF345Q14585 488 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 CST6Q15828 149 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 VMA21Q3ZAQ7 101 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 CENPWQ5EE01 88 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 FAM222AQ5U5X8 452 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 UNQ5815/PRO19632Q6UWF5 114 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 UNQ9165/PRO28630Q6UXU0 137 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 TEX43Q6ZNM6 134 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 RPS19BP1Q86WX3 136 aaKnown RBP2.6□□□□□ -1.99
NUP88-208ENST00000574087 ATOH7Q8N100 152 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 KCNRGQ8N5I3 272 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 C3orf22Q8N5N4 141 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 C11orf72Q8NBR9 251 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 RPS4Y2Q8TD47 263 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 TSLPQ969D9 159 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 DPH3Q96FX2 82 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 GPX7Q96SL4 187 aaPredicted RBP2.6□□□□□ -1.99
NUP88-208ENST00000574087 TSSK6Q9BXA6 273 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 MRPL20Q9BYC9 149 aaKnown RBP2.6□□□□□ -1.99
NUP88-208ENST00000574087 AICDAQ9GZX7 198 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 SMDT1Q9H4I9 107 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 NPVFQ9HCQ7 196 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 NDUFB11Q9NX14 153 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 FKBP11Q9NYL4 201 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 COQ4Q9Y3A0 265 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 ENPP4Q9Y6X5 453 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 COL1A2P08123 1366 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 LOXHD1Q8IVV2 1947 aa2.6□□□□□ -1.99
NUP88-208ENST00000574087 CITO14578 2027 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 ARFGEF2Q9Y6D5 1785 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 PARP14Q460N5 1801 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 DIP2CQ9Y2E4 1556 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 FXYD6-FXYD2A0A087WZ82 144 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 TRGV10A0A0A0MS01 117 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 TRBV7-6A0A0J9YX20 115 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 FAM236AA0A1B0GUQ0 79 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 FAM236BA0A1B0GV22 79 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 IGLC7A0M8Q6 106 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 C7orf77A4D0Y5 90 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 PGPA6NDG6 321 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 ZNF705GA8MUZ8 300 aaPredicted RBP2.59□□□□□ -1.99
NUP88-208ENST00000574087 TMEM262E9PQX1 116 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 FXYD1O00168 92 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 PIRO00625 290 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 TAX1BP3O14907 124 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 NDUFS5O43920 106 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 KLF7O75840 302 aaPredicted RBP2.59□□□□□ -1.99
NUP88-208ENST00000574087 HLA-DPB1P04440 258 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 IFITM1P13164 125 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 FABP4P15090 132 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 FAUP35544 74 aaKnown RBP2.59□□□□□ -1.99
NUP88-208ENST00000574087 SNCAP37840 140 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 TMEM258P61165 79 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 FKBP1AP62942 108 aaKnown RBP2.59□□□□□ -1.99
NUP88-208ENST00000574087 CACNG7P62955 275 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 HERVK_113P63121 156 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 Q0VG73 95 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 RTL8BQ17RB0 113 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 RRN3P1Q2M238 152 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 LYRM7Q5U5X0 104 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 ZNF880Q6PDB4 577 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 IGFL1Q6UW32 110 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 CLEC19AQ6UXS0 136 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 HEPN1Q6WQI6 88 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 CLEC20AQ6ZU45 233 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 Q6ZUT4 128 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 MSRB3Q8IXL7 192 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 LINC00471Q8N535 108 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 LINC00337Q8N6G1 96 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 ZNF709Q8N972 641 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 ZIC4Q8N9L1 334 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 OR10AC1Q8NH08 325 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 OR4A5Q8NH83 315 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 SLC25A40Q8TBP6 338 aa2.59□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms