RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 CDX4O14627 284 aaPredicted RBP2.54□□□□□ -2
VPS35-208ENST00000568612 LEPROTL1O95214 131 aa2.54□□□□□ -2
VPS35-208ENST00000568612 NUDT14O95848 222 aa2.54□□□□□ -2
VPS35-208ENST00000568612 TRACP01848 142 aa2.54□□□□□ -2
VPS35-208ENST00000568612 APOHP02749 345 aaPredicted RBP2.54□□□□□ -2
VPS35-208ENST00000568612 CD7P09564 240 aa2.54□□□□□ -2
VPS35-208ENST00000568612 GP9P14770 177 aa2.54□□□□□ -2
VPS35-208ENST00000568612 CRYGSP22914 178 aa2.54□□□□□ -2
VPS35-208ENST00000568612 DYNLT3P51808 116 aa2.54□□□□□ -2
VPS35-208ENST00000568612 CLDN17P56750 224 aa2.54□□□□□ -2
VPS35-208ENST00000568612 HILS1P60008 231 aa2.54□□□□□ -2
VPS35-208ENST00000568612 PMAIP1Q13794 54 aa2.54□□□□□ -2
VPS35-208ENST00000568612 TMEM187Q14656 261 aa2.54□□□□□ -2
VPS35-208ENST00000568612 MLF2Q15773 248 aaPredicted RBP2.54□□□□□ -2
VPS35-208ENST00000568612 PAPPA-AS1Q5QFB9 102 aa2.54□□□□□ -2
VPS35-208ENST00000568612 IGFL2Q6UWQ7 119 aa2.54□□□□□ -2
VPS35-208ENST00000568612 Q71RC1 249 aaPredicted RBP2.54□□□□□ -2
VPS35-208ENST00000568612 C11orf53Q8IXP5 236 aa2.54□□□□□ -2
VPS35-208ENST00000568612 AMN1Q8IY45 258 aa2.54□□□□□ -2
VPS35-208ENST00000568612 MMD2Q8IY49 270 aa2.54□□□□□ -2
VPS35-208ENST00000568612 RAB42Q8N4Z0 105 aa2.54□□□□□ -2
VPS35-208ENST00000568612 TMEM252Q8N6L7 170 aa2.54□□□□□ -2
VPS35-208ENST00000568612 POM121L12Q8N7R1 296 aa2.54□□□□□ -2
VPS35-208ENST00000568612 WDR31Q8NA23 367 aa2.54□□□□□ -2
VPS35-208ENST00000568612 OR5C1Q8NGR4 320 aa2.54□□□□□ -2
VPS35-208ENST00000568612 OR2T6Q8NHC8 308 aa2.54□□□□□ -2
VPS35-208ENST00000568612 FAM57AQ8TBR7 257 aa2.54□□□□□ -2
VPS35-208ENST00000568612 TMEM255BQ8WV15 326 aa2.54□□□□□ -2
VPS35-208ENST00000568612 C18orf12Q96KH6 178 aa2.54□□□□□ -2
VPS35-208ENST00000568612 FAM19A4Q96LR4 140 aa2.54□□□□□ -2
VPS35-208ENST00000568612 C2orf48Q96LS8 159 aa2.54□□□□□ -2
VPS35-208ENST00000568612 DEFB118Q96PH6 123 aa2.54□□□□□ -2
VPS35-208ENST00000568612 CHCHD5Q9BSY4 110 aa2.54□□□□□ -2
VPS35-208ENST00000568612 C20orf141Q9NUB4 165 aa2.54□□□□□ -2
VPS35-208ENST00000568612 NHP2Q9NX24 153 aaKnown RBP2.54□□□□□ -2
VPS35-208ENST00000568612 LSM4Q9Y4Z0 139 aaKnown RBP2.54□□□□□ -2
VPS35-208ENST00000568612 DOCK8Q8NF50 2099 aa2.54□□□□□ -2
VPS35-208ENST00000568612 PTPRSQ13332 1948 aa2.54□□□□□ -2
VPS35-208ENST00000568612 MGAMO43451 1857 aa2.54□□□□□ -2
VPS35-208ENST00000568612 PTPRDP23468 1912 aa2.53□□□□□ -2
VPS35-208ENST00000568612 IGHV4OR15-8A0A075B7B6 117 aa2.53□□□□□ -2
VPS35-208ENST00000568612 TRAV2A0A0B4J234 112 aa2.53□□□□□ -2
VPS35-208ENST00000568612 TRAV8-2A0A0B4J237 113 aa2.53□□□□□ -2
VPS35-208ENST00000568612 TRAV8-4A0A0B4J246 113 aa2.53□□□□□ -2
VPS35-208ENST00000568612 TRAV26-2A0A0B4J265 109 aa2.53□□□□□ -2
VPS35-208ENST00000568612 C15orf62A8K5M9 175 aa2.53□□□□□ -2
VPS35-208ENST00000568612 LOC730098B7Z3J9 87 aa2.53□□□□□ -2
VPS35-208ENST00000568612 C11orf94C9JXX5 98 aa2.53□□□□□ -2
VPS35-208ENST00000568612 PRAC2D3DTV9 90 aa2.53□□□□□ -2
VPS35-208ENST00000568612 NPIPB11E5RHQ5 1161 aa2.53□□□□□ -2
VPS35-208ENST00000568612 ATOX1O00244 68 aa2.53□□□□□ -2
VPS35-208ENST00000568612 CHEK1O14757 476 aa2.53□□□□□ -2
VPS35-208ENST00000568612 PDCD6O75340 191 aa2.53□□□□□ -2
VPS35-208ENST00000568612 NDUFB2O95178 105 aa2.53□□□□□ -2
VPS35-208ENST00000568612 IGHG2P01859 326 aa2.53□□□□□ -2
VPS35-208ENST00000568612 IGF1P05019 195 aa2.53□□□□□ -2
VPS35-208ENST00000568612 ASAH2BP0C7U1 165 aa2.53□□□□□ -2
VPS35-208ENST00000568612 LIFP15018 202 aa2.53□□□□□ -2
VPS35-208ENST00000568612 FKBP2P26885 142 aaKnown RBP2.53□□□□□ -2
VPS35-208ENST00000568612 GCHFRP30047 84 aa2.53□□□□□ -2
VPS35-208ENST00000568612 RPL13AP40429 203 aaKnown RBP2.53□□□□□ -2
VPS35-208ENST00000568612 CCL23P55773 120 aa2.53□□□□□ -2
VPS35-208ENST00000568612 GNB1P62873 340 aa2.53□□□□□ -2
VPS35-208ENST00000568612 RPL30P62888 115 aaKnown RBP2.53□□□□□ -2
VPS35-208ENST00000568612 LOXL1Q08397 574 aaPredicted RBP2.53□□□□□ -2
VPS35-208ENST00000568612 RTL8BQ17RB0 113 aa2.53□□□□□ -2
VPS35-208ENST00000568612 LGALS9BQ3B8N2 356 aa2.53□□□□□ -2
VPS35-208ENST00000568612 C1orf100Q5SVJ3 147 aa2.53□□□□□ -2
VPS35-208ENST00000568612 FKBP1CQ5VVH2 108 aa2.53□□□□□ -2
VPS35-208ENST00000568612 LGALS9CQ6DKI2 356 aa2.53□□□□□ -2
VPS35-208ENST00000568612 MFSD12Q6NUT3 480 aa2.53□□□□□ -2
VPS35-208ENST00000568612 PQLC2Q6ZP29 291 aa2.53□□□□□ -2
VPS35-208ENST00000568612 ZNF329Q86UD4 541 aa2.53□□□□□ -2
VPS35-208ENST00000568612 ODF3L1Q8IXM7 274 aa2.53□□□□□ -2
VPS35-208ENST00000568612 OR5AS1Q8N127 324 aa2.53□□□□□ -2
VPS35-208ENST00000568612 LINC01561Q8N1V8 128 aa2.53□□□□□ -2
VPS35-208ENST00000568612 ZCCHC24Q8N2G6 241 aaKnown RBP2.53□□□□□ -2
VPS35-208ENST00000568612 CIARTQ8N365 385 aaPredicted RBP2.53□□□□□ -2
VPS35-208ENST00000568612 GVQW1Q8N7I0 195 aa2.53□□□□□ -2
VPS35-208ENST00000568612 NABP1Q96AH0 204 aa2.53□□□□□ -2
VPS35-208ENST00000568612 HDHD3Q9BSH5 251 aaPredicted RBP2.53□□□□□ -2
VPS35-208ENST00000568612 AGPAT4-IT1Q9H0P7 198 aa2.53□□□□□ -2
VPS35-208ENST00000568612 GLIPR2Q9H4G4 154 aa2.53□□□□□ -2
VPS35-208ENST00000568612 C16orf95Q9H693 158 aa2.53□□□□□ -2
VPS35-208ENST00000568612 PDFQ9HBH1 243 aa2.53□□□□□ -2
VPS35-208ENST00000568612 KLF13Q9Y2Y9 288 aaPredicted RBP2.53□□□□□ -2
VPS35-208ENST00000568612 V9GYV3 84 aa2.53□□□□□ -2
VPS35-208ENST00000568612 LTBP1Q14766 1721 aa2.53□□□□□ -2
VPS35-208ENST00000568612 NOTCH4Q99466 2003 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 BPTFQ12830 3046 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 TRAV12-2A0A075B6T6 113 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 A0A087WYN8 130 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 TRAV8-1A0A0A6YYK1 113 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 MYBPHLA2RUH7 354 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 IZUMO1RA6ND01 250 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 PRSS46E5RG02 174 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 C16orf97H3BN30 126 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 H7C1H1 209 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 K7EM74 188 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 WNT9BO14905 357 aa2.52□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms