RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 NOTCH2Q04721 2471 aa2.78□□□□□ -1.96
LIMA1-210ENST00000552045 DOPEY1Q5JWR5 2465 aa2.78□□□□□ -1.96
LIMA1-210ENST00000552045 MYH11P35749 1972 aa2.78□□□□□ -1.97
LIMA1-210ENST00000552045 LTN1O94822 1766 aa2.77□□□□□ -1.97
LIMA1-210ENST00000552045 KIAA2026Q5HYC2 2103 aa2.77□□□□□ -1.97
LIMA1-210ENST00000552045 TRAPPC13A5PLN9 417 aa2.77□□□□□ -1.97
LIMA1-210ENST00000552045 OR51F1A6NGY5 319 aa2.77□□□□□ -1.97
LIMA1-210ENST00000552045 HMSDA8MTL9 139 aa2.77□□□□□ -1.97
LIMA1-210ENST00000552045 PGLYRP1O75594 196 aaPredicted RBP2.77□□□□□ -1.97
LIMA1-210ENST00000552045 CIAO1O76071 339 aa2.77□□□□□ -1.97
LIMA1-210ENST00000552045 IL9P15248 144 aa2.77□□□□□ -1.97
LIMA1-210ENST00000552045 FXYD2P54710 66 aa2.77□□□□□ -1.97
LIMA1-210ENST00000552045 VBP1P61758 197 aa2.77□□□□□ -1.97
LIMA1-210ENST00000552045 MIR17HGQ75NE6 70 aa2.77□□□□□ -1.97
LIMA1-210ENST00000552045 CLVS1Q8IUQ0 354 aaPredicted RBP2.77□□□□□ -1.97
LIMA1-210ENST00000552045 DNAJC9Q8WXX5 260 aa2.77□□□□□ -1.97
LIMA1-210ENST00000552045 GPR146Q96CH1 333 aa2.77□□□□□ -1.97
LIMA1-210ENST00000552045 ERGIC3Q9Y282 383 aa2.77□□□□□ -1.97
LIMA1-210ENST00000552045 GVINP1Q7Z2Y8 2422 aa2.77□□□□□ -1.97
LIMA1-210ENST00000552045 CNOT1A5YKK6 2376 aaKnown RBP2.76□□□□□ -1.97
LIMA1-210ENST00000552045 LRRC37A2A6NM11 1700 aa2.76□□□□□ -1.97
LIMA1-210ENST00000552045 ASPMQ8IZT6 3477 aa2.76□□□□□ -1.97
LIMA1-210ENST00000552045 ZNF705FA8MVS1 300 aaPredicted RBP2.76□□□□□ -1.97
LIMA1-210ENST00000552045 HMGB3O15347 200 aaKnown RBP2.76□□□□□ -1.97
LIMA1-210ENST00000552045 SLC38A11Q08AI6 406 aa2.76□□□□□ -1.97
LIMA1-210ENST00000552045 POU6F1Q14863 301 aa2.76□□□□□ -1.97
LIMA1-210ENST00000552045 PFN4Q8NHR9 129 aa2.76□□□□□ -1.97
LIMA1-210ENST00000552045 C11orf40Q8WZ69 217 aa2.76□□□□□ -1.97
LIMA1-210ENST00000552045 NFAT5O94916 1531 aa2.76□□□□□ -1.97
LIMA1-210ENST00000552045 KDM3BQ7LBC6 1761 aa2.76□□□□□ -1.97
LIMA1-210ENST00000552045 MYO18BQ8IUG5 2567 aa2.76□□□□□ -1.97
LIMA1-210ENST00000552045 FBN3Q75N90 2809 aa2.75□□□□□ -1.97
LIMA1-210ENST00000552045 ATG12O94817 140 aa2.75□□□□□ -1.97
LIMA1-210ENST00000552045 S1PR2O95136 353 aa2.75□□□□□ -1.97
LIMA1-210ENST00000552045 C1QBP02746 253 aa2.75□□□□□ -1.97
LIMA1-210ENST00000552045 CASP1P29466 404 aa2.75□□□□□ -1.97
LIMA1-210ENST00000552045 AQP4P55087 323 aa2.75□□□□□ -1.97
LIMA1-210ENST00000552045 RELAQ04206 551 aa2.75□□□□□ -1.97
LIMA1-210ENST00000552045 KRTAP6-3Q3LI67 103 aa2.75□□□□□ -1.97
LIMA1-210ENST00000552045 STX12Q86Y82 276 aa2.75□□□□□ -1.97
LIMA1-210ENST00000552045 TMEM86AQ8N2M4 240 aa2.75□□□□□ -1.97
LIMA1-210ENST00000552045 OR52R1Q8NGF1 315 aa2.75□□□□□ -1.97
LIMA1-210ENST00000552045 DCANP1Q8TF63 244 aa2.75□□□□□ -1.97
LIMA1-210ENST00000552045 GID8Q9NWU2 228 aa2.75□□□□□ -1.97
LIMA1-210ENST00000552045 PYCARDQ9ULZ3 195 aa2.75□□□□□ -1.97
LIMA1-210ENST00000552045 NRXN2Q9P2S2 1712 aa2.75□□□□□ -1.97
LIMA1-210ENST00000552045 DNAH14Q0VDD8 3507 aa2.75□□□□□ -1.97
LIMA1-210ENST00000552045 MYO9AB2RTY4 2548 aa2.75□□□□□ -1.97
LIMA1-210ENST00000552045 ECM29Q5VYK3 1845 aa2.75□□□□□ -1.97
LIMA1-210ENST00000552045 CACNA1HO95180 2353 aa2.74□□□□□ -1.97
LIMA1-210ENST00000552045 ANKRD26Q9UPS8 1709 aa2.74□□□□□ -1.97
LIMA1-210ENST00000552045 TRAV4A0A0B4J268 109 aa2.74□□□□□ -1.97
LIMA1-210ENST00000552045 MEIS3P1A6NDR6 274 aa2.74□□□□□ -1.97
LIMA1-210ENST00000552045 CLDN25C9JDP6 229 aa2.74□□□□□ -1.97
LIMA1-210ENST00000552045 J3QKU1 62 aa2.74□□□□□ -1.97
LIMA1-210ENST00000552045 NAPSAO96009 420 aa2.74□□□□□ -1.97
LIMA1-210ENST00000552045 TRGC1P0CF51 173 aa2.74□□□□□ -1.97
LIMA1-210ENST00000552045 S100A4P26447 101 aaKnown RBP2.74□□□□□ -1.97
LIMA1-210ENST00000552045 ARHGAP11BQ3KRB8 267 aa2.74□□□□□ -1.97
LIMA1-210ENST00000552045 TMEM106AQ96A25 262 aa2.74□□□□□ -1.97
LIMA1-210ENST00000552045 RNF122Q9H9V4 155 aa2.74□□□□□ -1.97
LIMA1-210ENST00000552045 UTP11Q9Y3A2 253 aaKnown RBP2.74□□□□□ -1.97
LIMA1-210ENST00000552045 RGPD5Q99666 1765 aa2.74□□□□□ -1.97
LIMA1-210ENST00000552045 DMXL1Q9Y485 3027 aa2.74□□□□□ -1.97
LIMA1-210ENST00000552045 HELZ2Q9BYK8 2649 aaKnown RBP2.73□□□□□ -1.97
LIMA1-210ENST00000552045 MAP2P11137 1827 aaKnown RBP2.73□□□□□ -1.97
LIMA1-210ENST00000552045 IFNA1P01562 189 aa2.73□□□□□ -1.97
LIMA1-210ENST00000552045 NDUFA5Q16718 116 aa2.73□□□□□ -1.97
LIMA1-210ENST00000552045 LINC01554Q52M75 96 aa2.73□□□□□ -1.97
LIMA1-210ENST00000552045 LCA10Q71F78 164 aa2.73□□□□□ -1.97
LIMA1-210ENST00000552045 HIST3H2BBQ8N257 126 aa2.73□□□□□ -1.97
LIMA1-210ENST00000552045 SPACA4Q8TDM5 124 aa2.73□□□□□ -1.97
LIMA1-210ENST00000552045 HOPXQ9BPY8 73 aaPredicted RBP2.73□□□□□ -1.97
LIMA1-210ENST00000552045 GINS4Q9BRT9 223 aa2.73□□□□□ -1.97
LIMA1-210ENST00000552045 TMEM106BQ9NUM4 274 aa2.73□□□□□ -1.97
LIMA1-210ENST00000552045 BAIAP2Q9UQB8 552 aa2.73□□□□□ -1.97
LIMA1-210ENST00000552045 SPEGQ15772 3267 aa2.73□□□□□ -1.97
LIMA1-210ENST00000552045 HECTD1Q9ULT8 2610 aa2.72□□□□□ -1.97
LIMA1-210ENST00000552045 TRBV19A0A075B6N1 114 aa2.72□□□□□ -1.97
LIMA1-210ENST00000552045 CLPSP04118 112 aa2.72□□□□□ -1.97
LIMA1-210ENST00000552045 IGKV1-16P04430 117 aa2.72□□□□□ -1.97
LIMA1-210ENST00000552045 ATP5G3P48201 142 aa2.72□□□□□ -1.97
LIMA1-210ENST00000552045 KRTAP21-3Q3LHN1 58 aa2.72□□□□□ -1.97
LIMA1-210ENST00000552045 TRAPPC6BQ86SZ2 158 aa2.72□□□□□ -1.97
LIMA1-210ENST00000552045 RNASE11Q8TAA1 199 aaKnown RBP2.72□□□□□ -1.97
LIMA1-210ENST00000552045 NEK7Q8TDX7 302 aa2.72□□□□□ -1.97
LIMA1-210ENST00000552045 HSPB9Q9BQS6 159 aa2.72□□□□□ -1.97
LIMA1-210ENST00000552045 WDR87Q6ZQQ6 2873 aa2.72□□□□□ -1.97
LIMA1-210ENST00000552045 AFDNP55196 1824 aaKnown RBP2.72□□□□□ -1.97
LIMA1-210ENST00000552045 KTN1Q86UP2 1357 aaKnown RBP2.72□□□□□ -1.97
LIMA1-210ENST00000552045 SPTBN2O15020 2390 aa2.72□□□□□ -1.97
LIMA1-210ENST00000552045 MYO15AQ9UKN7 3530 aa2.72□□□□□ -1.97
LIMA1-210ENST00000552045 COL5A3P25940 1745 aaPredicted RBP2.71□□□□□ -1.98
LIMA1-210ENST00000552045 ITPR3Q14573 2671 aa2.71□□□□□ -1.98
LIMA1-210ENST00000552045 C19orf84I3L1E1 186 aa2.71□□□□□ -1.98
LIMA1-210ENST00000552045 J3QRK9 145 aa2.71□□□□□ -1.98
LIMA1-210ENST00000552045 METTL15P1P0C7V9 234 aa2.71□□□□□ -1.98
LIMA1-210ENST00000552045 SRIP30626 198 aa2.71□□□□□ -1.98
LIMA1-210ENST00000552045 PIGPP57054 158 aa2.71□□□□□ -1.98
LIMA1-210ENST00000552045 YPEL3P61236 119 aaPredicted RBP2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms