RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 GALR1P47211 349 aa12.18□□□□□ -0.46
PRPF40A-212ENST00000545856 RAB14P61106 215 aa12.18□□□□□ -0.46
PRPF40A-212ENST00000545856 PMS2P11Q13670 270 aa12.18□□□□□ -0.46
PRPF40A-212ENST00000545856 GUK1Q16774 197 aa12.18□□□□□ -0.46
PRPF40A-212ENST00000545856 FAM122CQ6P4D5 195 aa12.18□□□□□ -0.46
PRPF40A-212ENST00000545856 C16orf54Q6UWD8 224 aa12.18□□□□□ -0.46
PRPF40A-212ENST00000545856 OR8I2Q8N0Y5 310 aa12.18□□□□□ -0.46
PRPF40A-212ENST00000545856 WFDC9Q8NEX5 89 aa12.18□□□□□ -0.46
PRPF40A-212ENST00000545856 FAM213BQ8TBF2 198 aa12.18□□□□□ -0.46
PRPF40A-212ENST00000545856 UHRF2Q96PU4 802 aa12.18□□□□□ -0.46
PRPF40A-212ENST00000545856 RHPN1-AS1Q9BWJ2 59 aa12.18□□□□□ -0.46
PRPF40A-212ENST00000545856 ARL2-SNX15V9GYD0 113 aa12.18□□□□□ -0.46
PRPF40A-212ENST00000545856 TRAV25A0A0B4J276 109 aa12.18□□□□□ -0.46
PRPF40A-212ENST00000545856 MAP1LC3B2A6NCE7 125 aa12.18□□□□□ -0.46
PRPF40A-212ENST00000545856 ZNF705EA8MWA4 302 aaPredicted RBP12.18□□□□□ -0.46
PRPF40A-212ENST00000545856 PDE6HQ13956 83 aa12.18□□□□□ -0.46
PRPF40A-212ENST00000545856 TM4SF20Q53R12 229 aa12.18□□□□□ -0.46
PRPF40A-212ENST00000545856 GLMPQ8WWB7 406 aa12.18□□□□□ -0.46
PRPF40A-212ENST00000545856 MAP1LC3BQ9GZQ8 125 aa12.18□□□□□ -0.46
PRPF40A-212ENST00000545856 TMEM167BQ9NRX6 74 aa12.18□□□□□ -0.46
PRPF40A-212ENST00000545856 CLEC5AQ9NY25 188 aa12.18□□□□□ -0.46
PRPF40A-212ENST00000545856 A0A087X0K7 114 aa12.17□□□□□ -0.46
PRPF40A-212ENST00000545856 TRAV2A0A0B4J234 112 aa12.17□□□□□ -0.46
PRPF40A-212ENST00000545856 CHEK1O14757 476 aa12.17□□□□□ -0.46
PRPF40A-212ENST00000545856 ZNF253O75346 499 aa12.17□□□□□ -0.46
PRPF40A-212ENST00000545856 CSN3P07498 182 aa12.17□□□□□ -0.46
PRPF40A-212ENST00000545856 FOLR2P14207 255 aa12.17□□□□□ -0.46
PRPF40A-212ENST00000545856 TAGLN2P37802 199 aaKnown RBP12.17□□□□□ -0.46
PRPF40A-212ENST00000545856 PSMB3P49720 205 aa12.17□□□□□ -0.46
PRPF40A-212ENST00000545856 MIR17HGQ75NE6 70 aa12.17□□□□□ -0.46
PRPF40A-212ENST00000545856 SPATA3Q8NHX4 192 aa12.17□□□□□ -0.46
PRPF40A-212ENST00000545856 LYPD6BQ8NI32 183 aa12.17□□□□□ -0.46
PRPF40A-212ENST00000545856 FAM167A-AS1Q96KT0 104 aa12.17□□□□□ -0.46
PRPF40A-212ENST00000545856 DUX3Q96PT4 197 aa12.17□□□□□ -0.46
PRPF40A-212ENST00000545856 SCRT1Q9BWW7 348 aa12.17□□□□□ -0.46
PRPF40A-212ENST00000545856 SLC25A22Q9H936 323 aa12.17□□□□□ -0.46
PRPF40A-212ENST00000545856 PLA2G2EQ9NZK7 142 aa12.17□□□□□ -0.46
PRPF40A-212ENST00000545856 RFNGQ9Y644 331 aa12.17□□□□□ -0.46
PRPF40A-212ENST00000545856 GP9P14770 177 aa12.16□□□□□ -0.46
PRPF40A-212ENST00000545856 IFITM2Q01629 132 aa12.16□□□□□ -0.46
PRPF40A-212ENST00000545856 IL34Q6ZMJ4 242 aa12.16□□□□□ -0.46
PRPF40A-212ENST00000545856 SUN5Q8TC36 379 aa12.16□□□□□ -0.46
PRPF40A-212ENST00000545856 SLC25A2Q9BXI2 301 aa12.16□□□□□ -0.46
PRPF40A-212ENST00000545856 OR51M1Q9H341 326 aa12.16□□□□□ -0.46
PRPF40A-212ENST00000545856 OR7C2O60412 319 aa12.15□□□□□ -0.46
PRPF40A-212ENST00000545856 HIST1H1EP10412 219 aaKnown RBP12.15□□□□□ -0.46
PRPF40A-212ENST00000545856 ZNF726P1Q15940 193 aa12.15□□□□□ -0.46
PRPF40A-212ENST00000545856 CLLU1Q5K131 121 aa12.15□□□□□ -0.46
PRPF40A-212ENST00000545856 FAM74A1Q5RGS3 127 aa12.15□□□□□ -0.46
PRPF40A-212ENST00000545856 LCN15Q6UWW0 184 aa12.15□□□□□ -0.46
PRPF40A-212ENST00000545856 SIGLEC15Q6ZMC9 328 aa12.15□□□□□ -0.46
PRPF40A-212ENST00000545856 DYNLRB2Q8TF09 96 aa12.15□□□□□ -0.46
PRPF40A-212ENST00000545856 PAXXQ9BUH6 204 aa12.15□□□□□ -0.46
PRPF40A-212ENST00000545856 NKX6-2Q9C056 277 aaPredicted RBP12.15□□□□□ -0.46
PRPF40A-212ENST00000545856 HRH4Q9H3N8 390 aa12.15□□□□□ -0.46
PRPF40A-212ENST00000545856 IGHV3OR16-8A0A075B7F1 116 aa12.14□□□□□ -0.47
PRPF40A-212ENST00000545856 MRPS12O15235 138 aaKnown RBP12.14□□□□□ -0.47
PRPF40A-212ENST00000545856 WIPF1O43516 503 aa12.14□□□□□ -0.47
PRPF40A-212ENST00000545856 ATF4P18848 351 aaPredicted RBP12.14□□□□□ -0.47
PRPF40A-212ENST00000545856 FHITP49789 147 aa12.14□□□□□ -0.47
PRPF40A-212ENST00000545856 UBE2L3P68036 154 aaKnown RBP12.14□□□□□ -0.47
PRPF40A-212ENST00000545856 C9orf66Q5T8R8 295 aa12.14□□□□□ -0.47
PRPF40A-212ENST00000545856 SPATA31B1PQ5VZV4 182 aa12.14□□□□□ -0.47
PRPF40A-212ENST00000545856 LYPD1Q8N2G4 141 aa12.14□□□□□ -0.47
PRPF40A-212ENST00000545856 SFT2D1Q8WV19 159 aa12.14□□□□□ -0.47
PRPF40A-212ENST00000545856 TXNDC17Q9BRA2 123 aa12.14□□□□□ -0.47
PRPF40A-212ENST00000545856 ZNF207O43670 478 aaKnown RBP12.13□□□□□ -0.47
PRPF40A-212ENST00000545856 IFNA1P01562 189 aa12.13□□□□□ -0.47
PRPF40A-212ENST00000545856 NMBP08949 121 aa12.13□□□□□ -0.47
PRPF40A-212ENST00000545856 ARL14EPLP0DKL9 152 aa12.13□□□□□ -0.47
PRPF40A-212ENST00000545856 IGLC2P0DOY2 106 aa12.13□□□□□ -0.47
PRPF40A-212ENST00000545856 CD33P20138 364 aa12.13□□□□□ -0.47
PRPF40A-212ENST00000545856 PAFAH1B2P68402 229 aa12.13□□□□□ -0.47
PRPF40A-212ENST00000545856 FAM90A2PQ658T7 463 aa12.13□□□□□ -0.47
PRPF40A-212ENST00000545856 MDFIQ99750 246 aa12.13□□□□□ -0.47
PRPF40A-212ENST00000545856 TCEAL7Q9BRU2 100 aa12.13□□□□□ -0.47
PRPF40A-212ENST00000545856 SLC50A1Q9BRV3 221 aa12.13□□□□□ -0.47
PRPF40A-212ENST00000545856 NRN1Q9NPD7 142 aa12.13□□□□□ -0.47
PRPF40A-212ENST00000545856 ZMAT5Q9UDW3 170 aaKnown RBP12.13□□□□□ -0.47
PRPF40A-212ENST00000545856 NOTCH3Q9UM47 2321 aa12.13□□□□□ -0.47
PRPF40A-212ENST00000545856 TSPAN4O14817 238 aa12.12□□□□□ -0.47
PRPF40A-212ENST00000545856 NDUFS6O75380 124 aaKnown RBP12.12□□□□□ -0.47
PRPF40A-212ENST00000545856 IGLV1-51P01701 117 aa12.12□□□□□ -0.47
PRPF40A-212ENST00000545856 APOHP02749 345 aaPredicted RBP12.12□□□□□ -0.47
PRPF40A-212ENST00000545856 GCHFRP30047 84 aa12.12□□□□□ -0.47
PRPF40A-212ENST00000545856 PRR31Q5SQ13 230 aa12.12□□□□□ -0.47
PRPF40A-212ENST00000545856 MORN5Q5VZ52 161 aa12.12□□□□□ -0.47
PRPF40A-212ENST00000545856 HIST2H2BDQ6DRA6 164 aa12.12□□□□□ -0.47
PRPF40A-212ENST00000545856 ARL6IP6Q8N6S5 226 aa12.12□□□□□ -0.47
PRPF40A-212ENST00000545856 SPAG8Q99932 426 aaPredicted RBP12.12□□□□□ -0.47
PRPF40A-212ENST00000545856 MANBALQ9NQG1 85 aa12.12□□□□□ -0.47
PRPF40A-212ENST00000545856 A0A1W2PRE2 83 aa12.11□□□□□ -0.47
PRPF40A-212ENST00000545856 NBEAP1P0C6P0 100 aa12.11□□□□□ -0.47
PRPF40A-212ENST00000545856 PSG9Q00887 426 aa12.11□□□□□ -0.47
PRPF40A-212ENST00000545856 DEFB114Q30KQ6 69 aa12.11□□□□□ -0.47
PRPF40A-212ENST00000545856 ADAMTSL5Q6ZMM2 481 aa12.11□□□□□ -0.47
PRPF40A-212ENST00000545856 SSX7Q7RTT5 188 aa12.11□□□□□ -0.47
PRPF40A-212ENST00000545856 TCF24Q7RTU0 167 aa12.11□□□□□ -0.47
PRPF40A-212ENST00000545856 FXYD5Q96DB9 178 aa12.11□□□□□ -0.47
PRPF40A-212ENST00000545856 MLXQ9UH92 298 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 379.2 ms