RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 TRAV12-3A0A0B4J271 114 aa11.4□□□□□ -0.58
USP3-204ENST00000540797 Q6ZRM9 215 aa11.4□□□□□ -0.58
USP3-204ENST00000540797 LINC00477Q96M19 166 aa11.4□□□□□ -0.58
USP3-204ENST00000540797 A0A1W2PNU3 283 aaPredicted RBP11.4□□□□□ -0.58
USP3-204ENST00000540797 IFI27P40305 119 aaPredicted RBP11.4□□□□□ -0.58
USP3-204ENST00000540797 HINT1P49773 126 aaPredicted RBP11.4□□□□□ -0.58
USP3-204ENST00000540797 RPLP1P05386 114 aaKnown RBP11.39□□□□□ -0.59
USP3-204ENST00000540797 G3V318 75 aa11.39□□□□□ -0.59
USP3-204ENST00000540797 CRPP02741 224 aa11.39□□□□□ -0.59
USP3-204ENST00000540797 TCRAP04437 139 aa11.39□□□□□ -0.59
USP3-204ENST00000540797 IGFL4Q6B9Z1 124 aa11.39□□□□□ -0.59
USP3-204ENST00000540797 LCN12Q6JVE5 192 aa11.39□□□□□ -0.59
USP3-204ENST00000540797 OR9G4Q8NGQ1 327 aa11.39□□□□□ -0.59
USP3-204ENST00000540797 UBE2E2Q96LR5 201 aa11.39□□□□□ -0.59
USP3-204ENST00000540797 PRADC1Q9BSG0 188 aa11.39□□□□□ -0.59
USP3-204ENST00000540797 CHCHD5Q9BSY4 110 aa11.39□□□□□ -0.59
USP3-204ENST00000540797 VCX2Q9H322 139 aa11.39□□□□□ -0.59
USP3-204ENST00000540797 LINC01619G3V211 115 aa11.39□□□□□ -0.59
USP3-204ENST00000540797 FGF16O43320 207 aa11.39□□□□□ -0.59
USP3-204ENST00000540797 HOXA5P20719 270 aa11.39□□□□□ -0.59
USP3-204ENST00000540797 CFPP27918 469 aa11.39□□□□□ -0.59
USP3-204ENST00000540797 RPP25LQ8N5L8 163 aaKnown RBP11.39□□□□□ -0.59
USP3-204ENST00000540797 AGMATQ9BSE5 352 aa11.39□□□□□ -0.59
USP3-204ENST00000540797 TRGV1A0A0A0MS02 117 aa11.39□□□□□ -0.59
USP3-204ENST00000540797 C1orf122Q6ZSJ8 110 aa11.39□□□□□ -0.59
USP3-204ENST00000540797 SRSF3P84103 164 aaKnown RBP11.38□□□□□ -0.59
USP3-204ENST00000540797 COTL1Q14019 142 aa11.38□□□□□ -0.59
USP3-204ENST00000540797 TSKUQ8WUA8 353 aa11.38□□□□□ -0.59
USP3-204ENST00000540797 LRRK1Q38SD2 2015 aa11.38□□□□□ -0.59
USP3-204ENST00000540797 PPBPP02775 128 aa11.38□□□□□ -0.59
USP3-204ENST00000540797 LINC00311Q8N616 119 aa11.38□□□□□ -0.59
USP3-204ENST00000540797 NDUFB8O95169 186 aa11.38□□□□□ -0.59
USP3-204ENST00000540797 INSP01308 110 aa11.38□□□□□ -0.59
USP3-204ENST00000540797 DKK1O94907 266 aa11.38□□□□□ -0.59
USP3-204ENST00000540797 TCF23Q7RTU1 214 aa11.38□□□□□ -0.59
USP3-204ENST00000540797 CADP27708 2225 aa11.38□□□□□ -0.59
USP3-204ENST00000540797 SRSF1Q07955 248 aaKnown RBP eCLIP11.37□□□□□ -0.59
USP3-204ENST00000540797 NUDT10Q8NFP7 164 aa11.37□□□□□ -0.59
USP3-204ENST00000540797 NUDT11Q96G61 164 aa11.37□□□□□ -0.59
USP3-204ENST00000540797 C1orf147Q96MC9 270 aaPredicted RBP11.37□□□□□ -0.59
USP3-204ENST00000540797 CYTL1Q9NRR1 136 aa11.37□□□□□ -0.59
USP3-204ENST00000540797 CA1P00915 261 aaPredicted RBP11.37□□□□□ -0.59
USP3-204ENST00000540797 DEFB113Q30KQ7 82 aa11.37□□□□□ -0.59
USP3-204ENST00000540797 Q8TAT8 98 aa11.37□□□□□ -0.59
USP3-204ENST00000540797 SMIM12Q96EX1 92 aa11.37□□□□□ -0.59
USP3-204ENST00000540797 KAAG1Q9UBP8 84 aa11.37□□□□□ -0.59
USP3-204ENST00000540797 HEATR5AQ86XA9 2040 aa11.37□□□□□ -0.59
USP3-204ENST00000540797 DEFB131AP59861 70 aa11.37□□□□□ -0.59
USP3-204ENST00000540797 COL5A1-AS1Q5SY13 56 aa11.37□□□□□ -0.59
USP3-204ENST00000540797 DKK4Q9UBT3 224 aa11.37□□□□□ -0.59
USP3-204ENST00000540797 KLF2Q9Y5W3 355 aaPredicted RBP11.37□□□□□ -0.59
USP3-204ENST00000540797 FNDC10F2Z333 226 aa11.36□□□□□ -0.59
USP3-204ENST00000540797 VGLL1Q99990 258 aa11.36□□□□□ -0.59
USP3-204ENST00000540797 FAM208BQ5VWN6 2430 aa11.36□□□□□ -0.59
USP3-204ENST00000540797 IGHV2-5P01817 119 aa11.36□□□□□ -0.59
USP3-204ENST00000540797 LYPD1Q8N2G4 141 aa11.36□□□□□ -0.59
USP3-204ENST00000540797 SPRY4Q9C004 299 aa11.36□□□□□ -0.59
USP3-204ENST00000540797 CYSLTR1Q9Y271 337 aa11.36□□□□□ -0.59
USP3-204ENST00000540797 IGKV3D-20A0A0C4DH25 116 aa11.36□□□□□ -0.59
USP3-204ENST00000540797 GZMBP10144 247 aa11.36□□□□□ -0.59
USP3-204ENST00000540797 EVI2AP22794 236 aa11.36□□□□□ -0.59
USP3-204ENST00000540797 FAM19A2Q8N3H0 131 aa11.36□□□□□ -0.59
USP3-204ENST00000540797 PMCHL2Q9BQD1 86 aa11.36□□□□□ -0.59
USP3-204ENST00000540797 TCF21O43680 179 aa11.36□□□□□ -0.59
USP3-204ENST00000540797 RIPPLY3P57055 190 aa11.36□□□□□ -0.59
USP3-204ENST00000540797 TMEM14BQ9NUH8 114 aa11.36□□□□□ -0.59
USP3-204ENST00000540797 JKAMPQ9P055 326 aa11.36□□□□□ -0.59
USP3-204ENST00000540797 IGHV3-73A0A0B4J1V6 119 aa11.36□□□□□ -0.59
USP3-204ENST00000540797 TRAV1-1A0A0B4J248 108 aa11.36□□□□□ -0.59
USP3-204ENST00000540797 NDUFA3O95167 84 aa11.36□□□□□ -0.59
USP3-204ENST00000540797 SHANK2-AS3Q9BTD1 123 aa11.36□□□□□ -0.59
USP3-204ENST00000540797 NXT2Q9NPJ8 142 aaKnown RBP11.36□□□□□ -0.59
USP3-204ENST00000540797 NDUFA4L2Q9NRX3 87 aa11.36□□□□□ -0.59
USP3-204ENST00000540797 RFNGQ9Y644 331 aa11.36□□□□□ -0.59
USP3-204ENST00000540797 ZGRF1Q86YA3 2104 aa11.35□□□□□ -0.59
USP3-204ENST00000540797 HOXA3O43365 443 aaPredicted RBP11.35□□□□□ -0.59
USP3-204ENST00000540797 GFI1BQ5VTD9 330 aa11.35□□□□□ -0.59
USP3-204ENST00000540797 NRN1Q9NPD7 142 aa11.35□□□□□ -0.59
USP3-204ENST00000540797 PLXND1Q9Y4D7 1925 aa11.35□□□□□ -0.59
USP3-204ENST00000540797 MMP23AO75900 390 aa11.35□□□□□ -0.59
USP3-204ENST00000540797 FABP2P12104 132 aa11.35□□□□□ -0.59
USP3-204ENST00000540797 IGHV3-53P01767 116 aa11.35□□□□□ -0.59
USP3-204ENST00000540797 ADORA2A-AS1P86434 159 aa11.35□□□□□ -0.59
USP3-204ENST00000540797 PSG3Q16557 428 aa11.35□□□□□ -0.59
USP3-204ENST00000540797 C1QL4Q86Z23 238 aa11.35□□□□□ -0.59
USP3-204ENST00000540797 RNF138Q8WVD3 245 aa11.35□□□□□ -0.59
USP3-204ENST00000540797 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.35□□□□□ -0.591e-6■■■■□ 20.5
USP3-204ENST00000540797 A0A087WX48 190 aa11.35□□□□□ -0.59
USP3-204ENST00000540797 C15orf65H3BRN8 121 aa11.35□□□□□ -0.59
USP3-204ENST00000540797 IGHV2-70P01814 119 aa11.34□□□□□ -0.59
USP3-204ENST00000540797 YLPM1P49750 1951 aaKnown RBP11.34□□□□□ -0.59
USP3-204ENST00000540797 ORMDL2Q53FV1 153 aa11.34□□□□□ -0.59
USP3-204ENST00000540797 ADARB2-AS1A8MUL3 147 aa11.34□□□□□ -0.59
USP3-204ENST00000540797 C22orf46C9J442 243 aa11.34□□□□□ -0.59
USP3-204ENST00000540797 CD28P10747 220 aa11.34□□□□□ -0.59
USP3-204ENST00000540797 KIF26AQ9ULI4 1882 aaPredicted RBP11.34□□□□□ -0.59
USP3-204ENST00000540797 GTF3C1Q12789 2109 aa11.34□□□□□ -0.59
USP3-204ENST00000540797 SH2D1AO60880 128 aa11.33□□□□□ -0.6
USP3-204ENST00000540797 ADMP35318 185 aa11.33□□□□□ -0.6
USP3-204ENST00000540797 RPL36AP83881 106 aaKnown RBP11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms