RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 IL1F10Q8WWZ1 152 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 FAM3DQ96BQ1 224 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 GNPNAT1Q96EK6 184 aaPredicted RBP1.64□□□□□ -2.15
CD44-216ENST00000525293 KCNS1Q96KK3 526 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 OR2A5Q96R48 311 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 PMCHL2Q9BQD1 86 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 SRXN1Q9BYN0 137 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 DEFB126Q9BYW3 111 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 SLC35B3Q9H1N7 401 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 NAA60Q9H7X0 242 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 SPRR3Q9UBC9 169 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 OR5V1Q9UGF6 321 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 LINC00588Q9Y4M8 146 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 DNAJC15Q9Y5T4 150 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 KCNE3Q9Y6H6 103 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 SERP1Q9Y6X1 66 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 HLA-DRB4X5D2U9 266 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 MROH1Q8NDA8 1641 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 ABCC3O15438 1527 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 ABCC6O95255 1503 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 USP6P35125 1406 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 QRICH2Q9H0J4 1663 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 CHD4Q14839 1912 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 SETXQ7Z333 2677 aaKnown RBP1.63□□□□□ -2.15
CD44-216ENST00000525293 MAP2P11137 1827 aaKnown RBP1.63□□□□□ -2.15
CD44-216ENST00000525293 NCOA2Q15596 1464 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 CDK12Q9NYV4 1490 aaPredicted RBP1.63□□□□□ -2.15
CD44-216ENST00000525293 SBF1O95248 1867 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 SHROOM2Q13796 1616 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 N4BP2Q86UW6 1770 aaPredicted RBP1.63□□□□□ -2.15
CD44-216ENST00000525293 HMGXB3Q12766 1538 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 ARHGAP5Q13017 1502 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 TRAV9-1A0A075B6T8 112 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 FXYD6-FXYD2A0A087WZ82 144 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 TRGV5A0A0B4J1U4 118 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 IGHV6-1A0A0B4J1U7 121 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 IGHV3OR16-9A0A0B4J2B5 98 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 A0A0G2JND7 137 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 DPRXA6NFQ7 191 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 UMAD1C9J7I0 102 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 E9PLD3 99 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 BUB1B-PAK6H3BSN5 160 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 SYS1-DBNDD2H3BUS1 97 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 TMEM256-PLSCR3K7ERE1 68 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 ANGPTL7O43827 346 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 IGKV1-5P01602 117 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 PRB2P02812 416 aaPredicted RBP1.63□□□□□ -2.15
CD44-216ENST00000525293 CD7P09564 240 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 ZNF688P0C7X2 276 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 COX6A1P12074 109 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 ZNF823P16415 610 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 VDAC1P21796 283 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 PSMB2P49721 201 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 ZNF136P52737 540 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 MFAP2P55001 183 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 RPS21P63220 83 aaKnown RBP1.63□□□□□ -2.15
CD44-216ENST00000525293 SEC11AP67812 179 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 FUT5Q11128 374 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 C17orf58Q2M2W7 97 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 MPV17LQ2QL34 196 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 LINC00303Q3SY05 128 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 C2orf83Q53S99 150 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 LAIR2Q6ISS4 152 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 EBLN2Q6P2I7 272 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 TMEM91Q6ZNR0 172 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 BPIFA4PQ86YQ2 179 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 DEFB107AQ8IZN7 70 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 TMEM256Q8N2U0 113 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 ZNF645Q8N7E2 425 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 OR10G2Q8NGC3 310 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 C18orf32Q8TCD1 76 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 WFDC5Q8TCV5 224 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 RNASE6Q93091 150 aaKnown RBP1.63□□□□□ -2.15
CD44-216ENST00000525293 POP5Q969H6 163 aaKnown RBP1.63□□□□□ -2.15
CD44-216ENST00000525293 MS4A6EQ96DS6 147 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 AQP10Q96PS8 301 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 TIMM17AQ99595 171 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 CCL13Q99616 98 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 TMEM243Q9BU79 118 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 GABARAPL3Q9BY60 117 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 IMUPQ9GZP8 106 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 COMMD5Q9GZQ3 224 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 FXYD6Q9H0Q3 95 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 CYSTM1Q9H1C7 97 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 DPH3P1Q9H4G8 78 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 SLC39A9Q9NUM3 307 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 XCL2Q9UBD3 114 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 CKLFQ9UBR5 152 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 FIS1Q9Y3D6 152 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 ABCA2Q9BZC7 2435 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 BLMP54132 1417 aaPredicted RBP1.63□□□□□ -2.15
CD44-216ENST00000525293 PTPN13Q12923 2485 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 ZSWIM8A7E2V4 1837 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 CDK5RAP2Q96SN8 1893 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 CFTRP13569 1480 aa1.63□□□□□ -2.15
CD44-216ENST00000525293 ZCCHC11Q5TAX3 1644 aaKnown RBP1.62□□□□□ -2.15
CD44-216ENST00000525293 IQGAP3Q86VI3 1631 aa1.62□□□□□ -2.15
CD44-216ENST00000525293 CC2D2AQ9P2K1 1620 aa1.62□□□□□ -2.15
CD44-216ENST00000525293 PLIN4Q96Q06 1357 aa1.62□□□□□ -2.15
CD44-216ENST00000525293 ABCC2Q92887 1545 aa1.62□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 75.3 ms