RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 HAPLN4Q86UW8 402 aa10.32□□□□□ -0.76
USP53-209ENST00000514665 OR5AN1Q8NGI8 311 aa10.32□□□□□ -0.76
USP53-209ENST00000514665 PLXNB3Q9ULL4 1909 aa10.32□□□□□ -0.76
USP53-209ENST00000514665 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.31□□□□□ -0.76
USP53-209ENST00000514665 ERVK11-1P61568 191 aa10.31□□□□□ -0.76
USP53-209ENST00000514665 TYMSP04818 313 aa10.31□□□□□ -0.76
USP53-209ENST00000514665 IFI27L1Q96BM0 104 aa10.31□□□□□ -0.76
USP53-209ENST00000514665 TRGV9Q99603 122 aa10.31□□□□□ -0.76
USP53-209ENST00000514665 SPCS1Q9Y6A9 102 aa10.31□□□□□ -0.76
USP53-209ENST00000514665 PCDH15Q96QU1 1955 aa10.31□□□□□ -0.76
USP53-209ENST00000514665 TRAV40A0A0B4J280 105 aa10.31□□□□□ -0.76
USP53-209ENST00000514665 A0A1W2PPI3 338 aa10.31□□□□□ -0.76
USP53-209ENST00000514665 COL8A2P25067 703 aa10.31□□□□□ -0.76
USP53-209ENST00000514665 DEFB104AQ8WTQ1 72 aa10.31□□□□□ -0.76
USP53-209ENST00000514665 NAA38Q9BRA0 125 aaKnown RBP10.31□□□□□ -0.76
USP53-209ENST00000514665 SLC50A1Q9BRV3 221 aa10.31□□□□□ -0.76
USP53-209ENST00000514665 MRPL16Q9NX20 251 aaKnown RBP10.31□□□□□ -0.76
USP53-209ENST00000514665 FRMPD3Q5JV73 1810 aa10.31□□□□□ -0.76
USP53-209ENST00000514665 NHP2Q9NX24 153 aaKnown RBP10.3□□□□□ -0.76
USP53-209ENST00000514665 PCNX3Q9H6A9 2034 aa10.3□□□□□ -0.76
USP53-209ENST00000514665 ATP5L2Q7Z4Y8 100 aa10.3□□□□□ -0.76
USP53-209ENST00000514665 JMJD8Q96S16 334 aa10.3□□□□□ -0.76
USP53-209ENST00000514665 ABCA2Q9BZC7 2435 aa10.3□□□□□ -0.76
USP53-209ENST00000514665 TECTAO75443 2155 aa10.3□□□□□ -0.76
USP53-209ENST00000514665 D6R8Y8 96 aa10.3□□□□□ -0.76
USP53-209ENST00000514665 CD7P09564 240 aa10.3□□□□□ -0.76
USP53-209ENST00000514665 TPTE2P1Q5T6R2 138 aa10.3□□□□□ -0.76
USP53-209ENST00000514665 hDV102S1A0JD36 115 aa10.29□□□□□ -0.76
USP53-209ENST00000514665 MMP23AO75900 390 aa10.29□□□□□ -0.76
USP53-209ENST00000514665 LYZL1Q6UWQ5 148 aa10.29□□□□□ -0.76
USP53-209ENST00000514665 FNDC4Q9H6D8 234 aaPredicted RBP10.29□□□□□ -0.76
USP53-209ENST00000514665 SUMO2P61956 95 aaKnown RBP10.29□□□□□ -0.76
USP53-209ENST00000514665 C5orf64Q2M2E5 130 aa10.29□□□□□ -0.76
USP53-209ENST00000514665 MEIG1Q5JSS6 88 aa10.29□□□□□ -0.76
USP53-209ENST00000514665 C10orf91Q5T1B1 145 aa10.29□□□□□ -0.76
USP53-209ENST00000514665 VMO1Q7Z5L0 202 aa10.29□□□□□ -0.76
USP53-209ENST00000514665 ZNF114Q8NC26 417 aa10.29□□□□□ -0.76
USP53-209ENST00000514665 ALKBH7Q9BT30 221 aaPredicted RBP10.29□□□□□ -0.76
USP53-209ENST00000514665 FAM181BA6NEQ2 426 aa10.29□□□□□ -0.76
USP53-209ENST00000514665 BUB1B-PAK6H3BSN5 160 aa10.29□□□□□ -0.76
USP53-209ENST00000514665 PRR30Q53SZ7 412 aaPredicted RBP10.29□□□□□ -0.76
USP53-209ENST00000514665 ZNF418Q8TF45 676 aaPredicted RBP10.29□□□□□ -0.76
USP53-209ENST00000514665 ZNF134P52741 427 aa10.28□□□□□ -0.76
USP53-209ENST00000514665 ITLN2Q8WWU7 325 aaPredicted RBP10.28□□□□□ -0.76
USP53-209ENST00000514665 A0A1B0GWB2 263 aa10.28□□□□□ -0.76
USP53-209ENST00000514665 E7EQL1 145 aa10.28□□□□□ -0.76
USP53-209ENST00000514665 SMAD7O15105 426 aaKnown RBP10.28□□□□□ -0.76
USP53-209ENST00000514665 PAPPA-AS1Q5QFB9 102 aa10.28□□□□□ -0.76
USP53-209ENST00000514665 TNFRSF18Q9Y5U5 241 aa10.28□□□□□ -0.76
USP53-209ENST00000514665 LY96Q9Y6Y9 160 aa10.28□□□□□ -0.76
USP53-209ENST00000514665 UBE2L6O14933 153 aa10.28□□□□□ -0.76
USP53-209ENST00000514665 VDAC2P45880 294 aaPredicted RBP10.28□□□□□ -0.76
USP53-209ENST00000514665 NDPQ00604 133 aa10.28□□□□□ -0.76
USP53-209ENST00000514665 CHCHD1Q96BP2 118 aaKnown RBP10.28□□□□□ -0.76
USP53-209ENST00000514665 TMEM14BQ9NUH8 114 aa10.28□□□□□ -0.76
USP53-209ENST00000514665 PAX8Q06710 450 aa10.28□□□□□ -0.76
USP53-209ENST00000514665 ZNF124Q15973 351 aa10.28□□□□□ -0.76
USP53-209ENST00000514665 BRD3OSQ6XYD6 125 aa10.28□□□□□ -0.76
USP53-209ENST00000514665 LYPD6Q86Y78 171 aa10.28□□□□□ -0.76
USP53-209ENST00000514665 NXT2Q9NPJ8 142 aaKnown RBP10.28□□□□□ -0.76
USP53-209ENST00000514665 PPBPP02775 128 aa10.27□□□□□ -0.76
USP53-209ENST00000514665 PPP1R17O96001 155 aa10.27□□□□□ -0.77
USP53-209ENST00000514665 MKI67P46013 3256 aaKnown RBP10.27□□□□□ -0.77
USP53-209ENST00000514665 ASPHD1Q5U4P2 390 aa10.27□□□□□ -0.77
USP53-209ENST00000514665 NUP37Q8NFH4 326 aa10.27□□□□□ -0.77
USP53-209ENST00000514665 DUX3Q96PT4 197 aa10.27□□□□□ -0.77
USP53-209ENST00000514665 LSM4Q9Y4Z0 139 aaKnown RBP10.27□□□□□ -0.77
USP53-209ENST00000514665 CNTFRP26992 372 aa10.26□□□□□ -0.77
USP53-209ENST00000514665 NUTF2P61970 127 aaKnown RBP10.26□□□□□ -0.77
USP53-209ENST00000514665 BEND2Q8NDZ0 799 aa10.26□□□□□ -0.77
USP53-209ENST00000514665 FGF23Q9GZV9 251 aaPredicted RBP10.26□□□□□ -0.77
USP53-209ENST00000514665 EREGO14944 169 aa10.26□□□□□ -0.77
USP53-209ENST00000514665 IGHV2-5P01817 119 aa10.26□□□□□ -0.77
USP53-209ENST00000514665 LDLRAD2Q5SZI1 272 aa10.26□□□□□ -0.77
USP53-209ENST00000514665 TRAV21A0A0B4J279 112 aa10.26□□□□□ -0.77
USP53-209ENST00000514665 CIRBPQ14011 172 aaKnown RBP10.26□□□□□ -0.77
USP53-209ENST00000514665 MPV17L2Q567V2 206 aa10.26□□□□□ -0.77
USP53-209ENST00000514665 MRAP2Q96G30 205 aa10.26□□□□□ -0.77
USP53-209ENST00000514665 ST20Q9HBF5 79 aa10.26□□□□□ -0.77
USP53-209ENST00000514665 TANC1Q9C0D5 1861 aa10.26□□□□□ -0.77
USP53-209ENST00000514665 GGTLC3B5MD39 225 aa10.25□□□□□ -0.77
USP53-209ENST00000514665 SMKR1H3BMG3 65 aa10.25□□□□□ -0.77
USP53-209ENST00000514665 C17orf58Q2M2W7 97 aa10.25□□□□□ -0.77
USP53-209ENST00000514665 ZNF329Q86UD4 541 aa10.25□□□□□ -0.77
USP53-209ENST00000514665 C11orf44Q8N8P7 122 aa10.25□□□□□ -0.77
USP53-209ENST00000514665 EML6Q6ZMW3 1958 aa10.25□□□□□ -0.77
USP53-209ENST00000514665 NPFFO15130 113 aa10.25□□□□□ -0.77
USP53-209ENST00000514665 DPM2O94777 84 aa10.25□□□□□ -0.77
USP53-209ENST00000514665 AMN1Q8IY45 258 aa10.25□□□□□ -0.77
USP53-209ENST00000514665 FAM169BQ8N8A8 192 aa10.25□□□□□ -0.77
USP53-209ENST00000514665 C5orf30Q96GV9 206 aa10.25□□□□□ -0.77
USP53-209ENST00000514665 MEGF9Q9H1U4 602 aa10.25□□□□□ -0.77
USP53-209ENST00000514665 TRAV41A0A0B4J266 112 aa10.25□□□□□ -0.77
USP53-209ENST00000514665 C15orf65H3BRN8 121 aa10.25□□□□□ -0.77
USP53-209ENST00000514665 NPFFR1Q9GZQ6 430 aa10.25□□□□□ -0.77
USP53-209ENST00000514665 A0A087X0K7 114 aa10.25□□□□□ -0.77
USP53-209ENST00000514665 A0A1W2PRX2 142 aa10.25□□□□□ -0.77
USP53-209ENST00000514665 H7C1H1 209 aa10.25□□□□□ -0.77
USP53-209ENST00000514665 NACAE9PAV3 2078 aa10.24□□□□□ -0.77
USP53-209ENST00000514665 SORL1Q92673 2214 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms