RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 PRNTQ86SH4 94 aa4.9□□□□□ -1.62
HERC4-209ENST00000473533 GTSF1Q8WW33 167 aa4.9□□□□□ -1.62
HERC4-209ENST00000473533 CEACAM4O75871 244 aa4.9□□□□□ -1.62
HERC4-209ENST00000473533 FAM87AP0C7U9 286 aa4.9□□□□□ -1.62
HERC4-209ENST00000473533 IGF2-ASQ6U949 168 aa4.9□□□□□ -1.62
HERC4-209ENST00000473533 IGFL3Q6UXB1 125 aa4.9□□□□□ -1.62
HERC4-209ENST00000473533 URB1-AS1Q96HZ7 61 aa4.9□□□□□ -1.62
HERC4-209ENST00000473533 ZNF747Q9BV97 191 aa4.9□□□□□ -1.62
HERC4-209ENST00000473533 SLC25A39Q9BZJ4 359 aaPredicted RBP4.9□□□□□ -1.62
HERC4-209ENST00000473533 TMEM133Q9H2Q1 129 aa4.9□□□□□ -1.62
HERC4-209ENST00000473533 DSCAML1Q8TD84 2053 aa4.9□□□□□ -1.63
HERC4-209ENST00000473533 hDV102S1A0JD36 115 aa4.9□□□□□ -1.63
HERC4-209ENST00000473533 TMEM178BH3BS89 294 aa4.9□□□□□ -1.63
HERC4-209ENST00000473533 THBDP07204 575 aa4.9□□□□□ -1.63
HERC4-209ENST00000473533 BMI1P35226 326 aa4.9□□□□□ -1.63
HERC4-209ENST00000473533 NHLH1Q02575 133 aa4.9□□□□□ -1.63
HERC4-209ENST00000473533 GOLT1AQ6ZVE7 132 aa4.9□□□□□ -1.63
HERC4-209ENST00000473533 ORMDL3Q8N138 153 aa4.9□□□□□ -1.63
HERC4-209ENST00000473533 SRSF12Q8WXF0 261 aaKnown RBP4.9□□□□□ -1.63
HERC4-209ENST00000473533 SHANK2-AS3Q9BTD1 123 aa4.9□□□□□ -1.63
HERC4-209ENST00000473533 TMUB1Q9BVT8 246 aa4.9□□□□□ -1.63
HERC4-209ENST00000473533 MUC21A0A0G2JKD1 596 aa4.89□□□□□ -1.63
HERC4-209ENST00000473533 MUC21A0A140T8X8 626 aa4.89□□□□□ -1.63
HERC4-209ENST00000473533 C7orf71A4D174 169 aa4.89□□□□□ -1.63
HERC4-209ENST00000473533 CBY3A6NI87 242 aa4.89□□□□□ -1.63
HERC4-209ENST00000473533 SH2D7A6NKC9 451 aaPredicted RBP4.89□□□□□ -1.63
HERC4-209ENST00000473533 CDX4O14627 284 aaPredicted RBP4.89□□□□□ -1.63
HERC4-209ENST00000473533 PLAUP00749 431 aa4.89□□□□□ -1.63
HERC4-209ENST00000473533 CEACAM8P31997 349 aaPredicted RBP4.89□□□□□ -1.63
HERC4-209ENST00000473533 PSG3Q16557 428 aa4.89□□□□□ -1.63
HERC4-209ENST00000473533 TMEM155Q4W5P6 130 aa4.89□□□□□ -1.63
HERC4-209ENST00000473533 MUC21Q5SSG8 566 aa4.89□□□□□ -1.63
HERC4-209ENST00000473533 ZNF841Q6ZN19 808 aa4.89□□□□□ -1.63
HERC4-209ENST00000473533 PSG8Q9UQ74 426 aa4.89□□□□□ -1.63
HERC4-209ENST00000473533 PKDREJQ9NTG1 2253 aa4.89□□□□□ -1.63
HERC4-209ENST00000473533 A1L4Q6 167 aa4.89□□□□□ -1.63
HERC4-209ENST00000473533 CGB1A6NKQ9 187 aa4.89□□□□□ -1.63
HERC4-209ENST00000473533 NKX2-8O15522 239 aa4.89□□□□□ -1.63
HERC4-209ENST00000473533 HBDP02042 147 aa4.89□□□□□ -1.63
HERC4-209ENST00000473533 IGHV1-8P0DP01 117 aa4.89□□□□□ -1.63
HERC4-209ENST00000473533 SSBP2P81877 361 aaPredicted RBP4.89□□□□□ -1.63
HERC4-209ENST00000473533 SRSF2Q01130 221 aaKnown RBP4.89□□□□□ -1.63
HERC4-209ENST00000473533 LDLRAD2Q5SZI1 272 aa4.89□□□□□ -1.63
HERC4-209ENST00000473533 AMMECR1LQ6DCA0 310 aa4.89□□□□□ -1.63
HERC4-209ENST00000473533 PPP1R27Q86WC6 154 aa4.89□□□□□ -1.63
HERC4-209ENST00000473533 NEU4Q8WWR8 484 aaPredicted RBP4.89□□□□□ -1.63
HERC4-209ENST00000473533 GUCD1Q96NT3 240 aa4.89□□□□□ -1.63
HERC4-209ENST00000473533 RABAC1Q9UI14 185 aa4.89□□□□□ -1.63
HERC4-209ENST00000473533 SIGLEC9Q9Y336 463 aa4.89□□□□□ -1.63
HERC4-209ENST00000473533 INSIG2Q9Y5U4 225 aa4.89□□□□□ -1.63
HERC4-209ENST00000473533 TRBV19A0A075B6N1 114 aa4.89□□□□□ -1.63
HERC4-209ENST00000473533 TMEM189A5PLL7 270 aa4.89□□□□□ -1.63
HERC4-209ENST00000473533 C9orf118A6NHY6 69 aa4.89□□□□□ -1.63
HERC4-209ENST00000473533 C16orf97H3BN30 126 aa4.89□□□□□ -1.63
HERC4-209ENST00000473533 IGLC1P0CG04 106 aa4.89□□□□□ -1.63
HERC4-209ENST00000473533 CCL3L1P16619 93 aa4.89□□□□□ -1.63
HERC4-209ENST00000473533 SPRNQ5BIV9 151 aa4.89□□□□□ -1.63
HERC4-209ENST00000473533 DUX4L9Q6RFH8 374 aaPredicted RBP4.89□□□□□ -1.63
HERC4-209ENST00000473533 PIFOQ8TCI5 191 aa4.89□□□□□ -1.63
HERC4-209ENST00000473533 DYNLRB1Q9NP97 96 aa4.89□□□□□ -1.63
HERC4-209ENST00000473533 SMPXQ9UHP9 88 aa4.89□□□□□ -1.63
HERC4-209ENST00000473533 MGAQ8IWI9 3026 aa4.88□□□□□ -1.63
HERC4-209ENST00000473533 CUBNO60494 3623 aa4.88□□□□□ -1.63
HERC4-209ENST00000473533 GAGE12BA1L429 117 aa4.88□□□□□ -1.63
HERC4-209ENST00000473533 H3BRN7 92 aa4.88□□□□□ -1.63
HERC4-209ENST00000473533 PSG1P11464 419 aa4.88□□□□□ -1.63
HERC4-209ENST00000473533 C10orf55Q5SWW7 151 aa4.88□□□□□ -1.63
HERC4-209ENST00000473533 HCP5Q6MZN7 132 aa4.88□□□□□ -1.63
HERC4-209ENST00000473533 FAM57AQ8TBR7 257 aa4.88□□□□□ -1.63
HERC4-209ENST00000473533 PRELID3AQ96N28 172 aa4.88□□□□□ -1.63
HERC4-209ENST00000473533 VWC2LB2RUY7 222 aa4.88□□□□□ -1.63
HERC4-209ENST00000473533 SMAD7O15105 426 aaKnown RBP4.88□□□□□ -1.63
HERC4-209ENST00000473533 CRYGBP07316 175 aa4.88□□□□□ -1.63
HERC4-209ENST00000473533 SMIM17P0DL12 118 aa4.88□□□□□ -1.63
HERC4-209ENST00000473533 CCL8P80075 99 aa4.88□□□□□ -1.63
HERC4-209ENST00000473533 UTF1Q5T230 341 aa4.88□□□□□ -1.63
HERC4-209ENST00000473533 SEM1Q6ZVN7 128 aa4.88□□□□□ -1.63
HERC4-209ENST00000473533 KIR3DL3Q8N743 410 aa4.88□□□□□ -1.63
HERC4-209ENST00000473533 RPEQ96AT9 228 aa4.88□□□□□ -1.63
HERC4-209ENST00000473533 ZNF48Q96MX3 618 aaPredicted RBP4.88□□□□□ -1.63
HERC4-209ENST00000473533 U3KQK5 164 aa4.88□□□□□ -1.63
HERC4-209ENST00000473533 KALRNO60229 2985 aa4.88□□□□□ -1.63
HERC4-209ENST00000473533 DMXL1Q9Y485 3027 aa4.88□□□□□ -1.63
HERC4-209ENST00000473533 OR2T8A6NH00 312 aa4.88□□□□□ -1.63
HERC4-209ENST00000473533 CSN3P07498 182 aa4.88□□□□□ -1.63
HERC4-209ENST00000473533 RAB9AP51151 201 aa4.88□□□□□ -1.63
HERC4-209ENST00000473533 DEFB109BQ30KR1 87 aa4.88□□□□□ -1.63
HERC4-209ENST00000473533 ZNF414Q96IQ9 312 aa4.88□□□□□ -1.63
HERC4-209ENST00000473533 THYN1Q9P016 225 aa4.88□□□□□ -1.63
HERC4-209ENST00000473533 CADP27708 2225 aa4.87□□□□□ -1.63
HERC4-209ENST00000473533 J3QR89 54 aa4.87□□□□□ -1.63
HERC4-209ENST00000473533 PRRG2O14669 202 aa4.87□□□□□ -1.63
HERC4-209ENST00000473533 RPL7P18124 248 aaKnown RBP4.87□□□□□ -1.63
HERC4-209ENST00000473533 DLX6P56179 175 aa4.87□□□□□ -1.63
HERC4-209ENST00000473533 FAM104BQ5XKR9 115 aa4.87□□□□□ -1.63
HERC4-209ENST00000473533 COX8CQ7Z4L0 72 aa4.87□□□□□ -1.63
HERC4-209ENST00000473533 BOD1L2Q8IYS8 172 aa4.87□□□□□ -1.63
HERC4-209ENST00000473533 NXT2Q9NPJ8 142 aaKnown RBP4.87□□□□□ -1.63
HERC4-209ENST00000473533 MED13Q9UHV7 2174 aa4.87□□□□□ -1.63
HERC4-209ENST00000473533 RAI1Q7Z5J4 1906 aaPredicted RBP4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms