RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 IFITM10A6NMD0 228 aa10.9□□□□□ -0.66
CCDC88A-211ENST00000471947 ITGB1BP1O14713 200 aa10.9□□□□□ -0.66
CCDC88A-211ENST00000471947 HSBP1O75506 76 aa10.9□□□□□ -0.66
CCDC88A-211ENST00000471947 CT45A10P0DMU9 189 aa10.9□□□□□ -0.66
CCDC88A-211ENST00000471947 PRTN3P24158 256 aa10.9□□□□□ -0.66
CCDC88A-211ENST00000471947 EFNA4P52798 201 aa10.9□□□□□ -0.66
CCDC88A-211ENST00000471947 CENPVQ7Z7K6 275 aaPredicted RBP10.9□□□□□ -0.66
CCDC88A-211ENST00000471947 SIGLECL1Q8N7X8 197 aa10.9□□□□□ -0.66
CCDC88A-211ENST00000471947 HIF1ANQ9NWT6 349 aa10.9□□□□□ -0.66
CCDC88A-211ENST00000471947 ORM1P02763 201 aa10.9□□□□□ -0.66
CCDC88A-211ENST00000471947 MFAP4P55083 255 aa10.9□□□□□ -0.66
CCDC88A-211ENST00000471947 TMEM95Q3KNT9 176 aa10.9□□□□□ -0.66
CCDC88A-211ENST00000471947 PARD6GQ9BYG4 376 aaPredicted RBP10.9□□□□□ -0.66
CCDC88A-211ENST00000471947 AAMDCQ9H7C9 122 aa10.9□□□□□ -0.66
CCDC88A-211ENST00000471947 DEFB1P60022 68 aa10.89□□□□□ -0.67
CCDC88A-211ENST00000471947 BPIFA4PQ86YQ2 179 aa10.89□□□□□ -0.67
CCDC88A-211ENST00000471947 TRBV24-1A0A075B6N3 115 aa10.89□□□□□ -0.67
CCDC88A-211ENST00000471947 ATP6V0E1O15342 81 aa10.89□□□□□ -0.67
CCDC88A-211ENST00000471947 RNF224P0DH78 156 aa10.89□□□□□ -0.67
CCDC88A-211ENST00000471947 HTN1P15515 57 aa10.89□□□□□ -0.67
CCDC88A-211ENST00000471947 CSN1S1P47710 185 aa10.89□□□□□ -0.67
CCDC88A-211ENST00000471947 CCDC144NLQ6NUI1 221 aa10.89□□□□□ -0.67
CCDC88A-211ENST00000471947 NUDT10Q8NFP7 164 aa10.89□□□□□ -0.67
CCDC88A-211ENST00000471947 NUDT11Q96G61 164 aa10.89□□□□□ -0.67
CCDC88A-211ENST00000471947 IL36BQ9NZH7 164 aa10.89□□□□□ -0.67
CCDC88A-211ENST00000471947 EPDR1Q9UM22 224 aa10.89□□□□□ -0.67
CCDC88A-211ENST00000471947 TSTD3H0UI37 97 aa10.89□□□□□ -0.67
CCDC88A-211ENST00000471947 GPX4P36969 197 aaPredicted RBP10.89□□□□□ -0.67
CCDC88A-211ENST00000471947 POU2AF1Q16633 256 aa10.89□□□□□ -0.67
CCDC88A-211ENST00000471947 RNF182Q8N6D2 247 aa10.89□□□□□ -0.67
CCDC88A-211ENST00000471947 PMCHL2Q9BQD1 86 aa10.89□□□□□ -0.67
CCDC88A-211ENST00000471947 IGKV1D-37A0A075B6S9 117 aa10.88□□□□□ -0.67
CCDC88A-211ENST00000471947 IGHV2-5P01817 119 aa10.88□□□□□ -0.67
CCDC88A-211ENST00000471947 SMIM6P0DI80 62 aa10.88□□□□□ -0.67
CCDC88A-211ENST00000471947 THYN1Q9P016 225 aa10.88□□□□□ -0.67
CCDC88A-211ENST00000471947 A0A1B0GWJ7 208 aa10.88□□□□□ -0.67
CCDC88A-211ENST00000471947 IGHV4-39P01824 125 aa10.88□□□□□ -0.67
CCDC88A-211ENST00000471947 FOLR2P14207 255 aa10.88□□□□□ -0.67
CCDC88A-211ENST00000471947 SSX8Q7RTT4 187 aa10.88□□□□□ -0.67
CCDC88A-211ENST00000471947 H3BUX3 64 aa10.88□□□□□ -0.67
CCDC88A-211ENST00000471947 TBX15Q96SF7 602 aa10.88□□□□□ -0.67
CCDC88A-211ENST00000471947 CHRDL1Q9BU40 450 aa10.88□□□□□ -0.67
CCDC88A-211ENST00000471947 CSMD2Q7Z408 3487 aa10.88□□□□□ -0.67
CCDC88A-211ENST00000471947 ELOA3CA0A087WX78 387 aaPredicted RBP10.87□□□□□ -0.67
CCDC88A-211ENST00000471947 SRP14P37108 136 aaKnown RBP10.87□□□□□ -0.67
CCDC88A-211ENST00000471947 FLNAP21333 2647 aaKnown RBP10.87□□□□□ -0.67
CCDC88A-211ENST00000471947 APCSP02743 223 aa10.87□□□□□ -0.67
CCDC88A-211ENST00000471947 IGHV4-38-2P0DP08 117 aa10.87□□□□□ -0.67
CCDC88A-211ENST00000471947 TMEM75Q8N9X5 138 aa10.87□□□□□ -0.67
CCDC88A-211ENST00000471947 FAM167A-AS1Q96KT0 104 aa10.87□□□□□ -0.67
CCDC88A-211ENST00000471947 IGHV4-30-2A0A087WSY4 118 aa10.87□□□□□ -0.67
CCDC88A-211ENST00000471947 HLA-DRB1P01911 266 aa10.87□□□□□ -0.67
CCDC88A-211ENST00000471947 TRGV3P03979 118 aa10.87□□□□□ -0.67
CCDC88A-211ENST00000471947 TPPP2P59282 170 aa10.87□□□□□ -0.67
CCDC88A-211ENST00000471947 TMEM30BQ3MIR4 351 aa10.87□□□□□ -0.67
CCDC88A-211ENST00000471947 NPIPB5A8MRT5 1133 aa10.86□□□□□ -0.67
CCDC88A-211ENST00000471947 IGKV1-17P01599 117 aa10.86□□□□□ -0.67
CCDC88A-211ENST00000471947 IGLC1P0CG04 106 aa10.86□□□□□ -0.67
CCDC88A-211ENST00000471947 C1RLQ9NZP8 487 aa10.86□□□□□ -0.67
CCDC88A-211ENST00000471947 A0A087X0M5 115 aa10.86□□□□□ -0.67
CCDC88A-211ENST00000471947 A0A1B0GX30 115 aa10.86□□□□□ -0.67
CCDC88A-211ENST00000471947 TEX22C9J3V5 150 aa10.86□□□□□ -0.67
CCDC88A-211ENST00000471947 IL17RELQ6ZVW7 336 aa10.86□□□□□ -0.67
CCDC88A-211ENST00000471947 TMEM183AQ8IXX5 376 aa10.86□□□□□ -0.67
CCDC88A-211ENST00000471947 FXYD5Q96DB9 178 aa10.86□□□□□ -0.67
CCDC88A-211ENST00000471947 DMRT1Q9Y5R6 373 aa10.86□□□□□ -0.67
CCDC88A-211ENST00000471947 K7EQM0 130 aa10.85□□□□□ -0.67
CCDC88A-211ENST00000471947 LINC00311Q8N616 119 aa10.85□□□□□ -0.67
CCDC88A-211ENST00000471947 MRPL32Q9BYC8 188 aaKnown RBP10.85□□□□□ -0.67
CCDC88A-211ENST00000471947 ZNF586Q9NXT0 402 aa10.85□□□□□ -0.67
CCDC88A-211ENST00000471947 TEX15Q9BXT5 2789 aa10.85□□□□□ -0.67
CCDC88A-211ENST00000471947 A0A1W2PRE2 83 aa10.85□□□□□ -0.67
CCDC88A-211ENST00000471947 HOXB4P17483 251 aaPredicted RBP10.85□□□□□ -0.67
CCDC88A-211ENST00000471947 PIP4P2Q8N4L2 257 aa10.85□□□□□ -0.67
CCDC88A-211ENST00000471947 RABAC1Q9UI14 185 aa10.85□□□□□ -0.67
CCDC88A-211ENST00000471947 ERCC8Q13216 396 aa10.85□□□□□ -0.67
CCDC88A-211ENST00000471947 FAM209BQ5JX69 171 aa10.85□□□□□ -0.67
CCDC88A-211ENST00000471947 LCN12Q6JVE5 192 aa10.85□□□□□ -0.67
CCDC88A-211ENST00000471947 BEND2Q8NDZ0 799 aa10.85□□□□□ -0.67
CCDC88A-211ENST00000471947 BORCS7Q96B45 105 aa10.85□□□□□ -0.67
CCDC88A-211ENST00000471947 PIMREGQ9BSJ6 248 aa10.85□□□□□ -0.67
CCDC88A-211ENST00000471947 ITPR3Q14573 2671 aa10.84□□□□□ -0.67
CCDC88A-211ENST00000471947 SFTPCP11686 197 aa10.84□□□□□ -0.67
CCDC88A-211ENST00000471947 C8orf46Q8TAG6 207 aa10.84□□□□□ -0.67
CCDC88A-211ENST00000471947 K7EIM0 57 aa10.84□□□□□ -0.67
CCDC88A-211ENST00000471947 BLCAPP62952 87 aa10.84□□□□□ -0.67
CCDC88A-211ENST00000471947 C8orf49Q96NF6 230 aa10.84□□□□□ -0.67
CCDC88A-211ENST00000471947 RNF2Q99496 336 aa10.84□□□□□ -0.67
CCDC88A-211ENST00000471947 NCOR1P1Q9H4R4 102 aa10.84□□□□□ -0.67
CCDC88A-211ENST00000471947 NPFFO15130 113 aa10.84□□□□□ -0.67
CCDC88A-211ENST00000471947 RAB4AP20338 218 aa10.84□□□□□ -0.67
CCDC88A-211ENST00000471947 RELQ04864 619 aaPredicted RBP10.84□□□□□ -0.67
CCDC88A-211ENST00000471947 RNF223E7ERA6 249 aa10.83□□□□□ -0.68
CCDC88A-211ENST00000471947 TCRAP04437 139 aa10.83□□□□□ -0.68
CCDC88A-211ENST00000471947 HIST1H1EP10412 219 aaKnown RBP10.83□□□□□ -0.68
CCDC88A-211ENST00000471947 C5orf17Q8NAS9 161 aa10.83□□□□□ -0.68
CCDC88A-211ENST00000471947 V9GYV3 84 aa10.83□□□□□ -0.68
CCDC88A-211ENST00000471947 LINC00322Q6ZN03 302 aaPredicted RBP10.83□□□□□ -0.68
CCDC88A-211ENST00000471947 NUP35Q8NFH5 326 aa10.83□□□□□ -0.68
CCDC88A-211ENST00000471947 GPR82Q96P67 336 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms