RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 MED12Q93074 2177 aa2.86□□□□□ -1.95
VPS29-202ENST00000447578 IGKV1D-17A0A075B6S4 117 aa2.86□□□□□ -1.95
VPS29-202ENST00000447578 ZNF98A6NK75 572 aa2.86□□□□□ -1.95
VPS29-202ENST00000447578 C17orf112F2Z3M2 114 aa2.86□□□□□ -1.95
VPS29-202ENST00000447578 H7C1H1 209 aa2.86□□□□□ -1.95
VPS29-202ENST00000447578 K7EM74 188 aa2.86□□□□□ -1.95
VPS29-202ENST00000447578 YPEL1O60688 119 aa2.86□□□□□ -1.95
VPS29-202ENST00000447578 INSP01308 110 aa2.86□□□□□ -1.95
VPS29-202ENST00000447578 IGKV1D-33P01593 117 aa2.86□□□□□ -1.95
VPS29-202ENST00000447578 IGKV1-33P01594 117 aa2.86□□□□□ -1.95
VPS29-202ENST00000447578 CXCL1P09341 107 aa2.86□□□□□ -1.95
VPS29-202ENST00000447578 BCL2P10415 239 aa2.86□□□□□ -1.95
VPS29-202ENST00000447578 GZMHP20718 246 aa2.86□□□□□ -1.95
VPS29-202ENST00000447578 GLRXP35754 106 aa2.86□□□□□ -1.95
VPS29-202ENST00000447578 CTRLP40313 264 aa2.86□□□□□ -1.95
VPS29-202ENST00000447578 RPS10P46783 165 aaKnown RBP2.86□□□□□ -1.95
VPS29-202ENST00000447578 NMUP48645 174 aa2.86□□□□□ -1.95
VPS29-202ENST00000447578 KLF3P57682 345 aaPredicted RBP2.86□□□□□ -1.95
VPS29-202ENST00000447578 HERVK_113P61574 105 aa2.86□□□□□ -1.95
VPS29-202ENST00000447578 GNB2P62879 340 aa2.86□□□□□ -1.95
VPS29-202ENST00000447578 SLC35B1P78383 322 aa2.86□□□□□ -1.95
VPS29-202ENST00000447578 TNFAIP6P98066 277 aaPredicted RBP2.86□□□□□ -1.95
VPS29-202ENST00000447578 TFF3Q07654 80 aa2.86□□□□□ -1.95
VPS29-202ENST00000447578 POU2AF1Q16633 256 aa2.86□□□□□ -1.95
VPS29-202ENST00000447578 MORN2Q502X0 79 aa2.86□□□□□ -1.95
VPS29-202ENST00000447578 RPL39P5Q59GN2 51 aa2.86□□□□□ -1.95
VPS29-202ENST00000447578 FAM201AQ5SY85 155 aa2.86□□□□□ -1.95
VPS29-202ENST00000447578 HEPN1Q6WQI6 88 aa2.86□□□□□ -1.95
VPS29-202ENST00000447578 Q6ZS92 163 aa2.86□□□□□ -1.95
VPS29-202ENST00000447578 SLC35E3Q7Z769 313 aa2.86□□□□□ -1.95
VPS29-202ENST00000447578 IQCF2Q8IXL9 164 aa2.86□□□□□ -1.95
VPS29-202ENST00000447578 TCTEX1D1Q8N7M0 179 aa2.86□□□□□ -1.95
VPS29-202ENST00000447578 ZNF709Q8N972 641 aa2.86□□□□□ -1.95
VPS29-202ENST00000447578 OR10G4Q8NGN3 311 aa2.86□□□□□ -1.95
VPS29-202ENST00000447578 LEAP2Q969E1 77 aa2.86□□□□□ -1.95
VPS29-202ENST00000447578 YPEL4Q96NS1 127 aa2.86□□□□□ -1.95
VPS29-202ENST00000447578 CIB3Q96Q77 187 aaPredicted RBP2.86□□□□□ -1.95
VPS29-202ENST00000447578 YPEL2Q96QA6 119 aa2.86□□□□□ -1.95
VPS29-202ENST00000447578 C12orf57Q99622 126 aa2.86□□□□□ -1.95
VPS29-202ENST00000447578 SLC39A9Q9NUM3 307 aa2.86□□□□□ -1.95
VPS29-202ENST00000447578 VAX2Q9UIW0 290 aa2.86□□□□□ -1.95
VPS29-202ENST00000447578 JPT1Q9UK76 154 aa2.86□□□□□ -1.95
VPS29-202ENST00000447578 FAM215AQ9Y5M1 114 aa2.86□□□□□ -1.95
VPS29-202ENST00000447578 URGCP-MRPS24S4R325 110 aa2.86□□□□□ -1.95
VPS29-202ENST00000447578 SEC16AO15027 2179 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 PRRC2AP48634 2157 aaKnown RBP2.85□□□□□ -1.95
VPS29-202ENST00000447578 SDK1Q7Z5N4 2213 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 TNRC6AQ8NDV7 1962 aaKnown RBP2.85□□□□□ -1.95
VPS29-202ENST00000447578 A0A087WWC5 75 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 TGIF2-C20orf24A0A0A6YYL0 155 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 TRAV3A0A0B4J244 114 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 CTXND1A0A1B0GTU2 59 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 CYB5BO43169 146 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 LY6G6DO95868 133 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 CYB5R3P00387 301 aaPredicted RBP2.85□□□□□ -1.95
VPS29-202ENST00000447578 LHBP01229 141 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 IFNA10P01566 189 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 IGHV1-46P01743 117 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 GYPAP02724 150 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 NQO2P16083 231 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 PI4KAP42356 2102 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 PSMB3P49720 205 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 GNG10P50151 68 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 UCNP55089 124 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 NDUFA6P56556 154 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 PAFAH1B2P68402 229 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 FABP9Q0Z7S8 132 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 ELOBQ15370 118 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 USF2Q15853 346 aaPredicted RBP2.85□□□□□ -1.95
VPS29-202ENST00000447578 TMEM183BQ1AE95 376 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 ACOT6Q3I5F7 207 aaPredicted RBP2.85□□□□□ -1.95
VPS29-202ENST00000447578 NCMAPQ5T1S8 102 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 IGFL3Q6UXB1 125 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 SLC16A13Q7RTY0 426 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 CAMK2N1Q7Z7J9 78 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 TMEM183AQ8IXX5 376 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 RPP25LQ8N5L8 163 aaKnown RBP2.85□□□□□ -1.95
VPS29-202ENST00000447578 C11orf42Q8N5U0 333 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 DEFB108BQ8NET1 73 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 OR51G1Q8NGK1 321 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 FAM57AQ8TBR7 257 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 Q8WTZ3 238 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 MALSU1Q96EH3 234 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 CCL13Q99616 98 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 SFXN3Q9BWM7 321 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 SLC25A2Q9BXI2 301 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 NPCDR1Q9BY65 106 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 IFI27L2Q9H2X8 130 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 EDA2RQ9HAV5 297 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 SIRT7Q9NRC8 400 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 IDI2-AS1Q9NZ38 188 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 NAT8Q9UHE5 227 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 LAMA3Q16787 3333 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 TECTAO75443 2155 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 CACNA1EQ15878 2313 aa2.85□□□□□ -1.95
VPS29-202ENST00000447578 ASCC3Q8N3C0 2202 aaKnown RBP2.84□□□□□ -1.95
VPS29-202ENST00000447578 CABIN1Q9Y6J0 2220 aa2.84□□□□□ -1.95
VPS29-202ENST00000447578 TRANK1O15050 2925 aa2.84□□□□□ -1.95
VPS29-202ENST00000447578 IGLV3-9A0A075B6K5 115 aa2.84□□□□□ -1.95
VPS29-202ENST00000447578 TRGV10A0A0A0MS01 117 aa2.84□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms