RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 SAA4P35542 130 aa9.92□□□□□ -0.82
CCDC88A-207ENST00000436346 BUB1B-PAK6H3BSN5 160 aa9.92□□□□□ -0.82
CCDC88A-207ENST00000436346 TMEM8BA6NDV4 472 aa9.92□□□□□ -0.82
CCDC88A-207ENST00000436346 PLSCR4Q9NRQ2 329 aa9.92□□□□□ -0.82
CCDC88A-207ENST00000436346 SELLP14151 372 aa9.92□□□□□ -0.82
CCDC88A-207ENST00000436346 TPTE2P1Q5T6R2 138 aa9.92□□□□□ -0.82
CCDC88A-207ENST00000436346 ZNF474Q6S9Z5 364 aaPredicted RBP9.92□□□□□ -0.82
CCDC88A-207ENST00000436346 ERVH48-1M5A8F1 160 aa9.92□□□□□ -0.82
CCDC88A-207ENST00000436346 FAM169BQ8N8A8 192 aa9.92□□□□□ -0.82
CCDC88A-207ENST00000436346 C1QTNF4Q9BXJ3 329 aa9.92□□□□□ -0.82
CCDC88A-207ENST00000436346 TRAV9-1A0A075B6T8 112 aa9.91□□□□□ -0.82
CCDC88A-207ENST00000436346 ZNF329Q86UD4 541 aa9.91□□□□□ -0.82
CCDC88A-207ENST00000436346 TNFSF13O75888 250 aa9.91□□□□□ -0.82
CCDC88A-207ENST00000436346 HBDP02042 147 aa9.91□□□□□ -0.82
CCDC88A-207ENST00000436346 BPESC1Q9GZL8 116 aa9.91□□□□□ -0.82
CCDC88A-207ENST00000436346 ABCA12Q86UK0 2595 aa9.91□□□□□ -0.82
CCDC88A-207ENST00000436346 HOXA3O43365 443 aaPredicted RBP9.91□□□□□ -0.82
CCDC88A-207ENST00000436346 FGFBP3Q8TAT2 258 aa9.91□□□□□ -0.82
CCDC88A-207ENST00000436346 M0R2P5 195 aa9.91□□□□□ -0.82
CCDC88A-207ENST00000436346 DEFB130BP0DP73 79 aa9.91□□□□□ -0.82
CCDC88A-207ENST00000436346 DEFB130AP0DP74 79 aa9.91□□□□□ -0.82
CCDC88A-207ENST00000436346 C5orf64Q2M2E5 130 aa9.91□□□□□ -0.82
CCDC88A-207ENST00000436346 TTC9CQ8N5M4 171 aa9.91□□□□□ -0.82
CCDC88A-207ENST00000436346 PRR30Q53SZ7 412 aaPredicted RBP9.91□□□□□ -0.82
CCDC88A-207ENST00000436346 F8WEM9 126 aa9.91□□□□□ -0.82
CCDC88A-207ENST00000436346 MORN3Q6PF18 240 aaPredicted RBP9.91□□□□□ -0.82
CCDC88A-207ENST00000436346 SCRT1Q9BWW7 348 aa9.91□□□□□ -0.82
CCDC88A-207ENST00000436346 LINC00614P0C842 121 aa9.91□□□□□ -0.82
CCDC88A-207ENST00000436346 SERF1AO75920 110 aa9.9□□□□□ -0.82
CCDC88A-207ENST00000436346 TMEM249Q2WGJ8 235 aa9.9□□□□□ -0.82
CCDC88A-207ENST00000436346 A0A0A6YYD4 124 aa9.9□□□□□ -0.82
CCDC88A-207ENST00000436346 UBE2E2Q96LR5 201 aa9.9□□□□□ -0.82
CCDC88A-207ENST00000436346 Q96MF0 132 aa9.9□□□□□ -0.82
CCDC88A-207ENST00000436346 SRRM5B3KS81 715 aa9.9□□□□□ -0.82
CCDC88A-207ENST00000436346 MGST2Q99735 147 aa9.9□□□□□ -0.82
CCDC88A-207ENST00000436346 RPUSD1Q9UJJ7 312 aaKnown RBP9.9□□□□□ -0.82
CCDC88A-207ENST00000436346 PRRC2CQ9Y520 2896 aaKnown RBP9.9□□□□□ -0.82
CCDC88A-207ENST00000436346 IGKV1-9A0A0C4DH69 117 aa9.9□□□□□ -0.82
CCDC88A-207ENST00000436346 ADMP35318 185 aa9.9□□□□□ -0.82
CCDC88A-207ENST00000436346 TRAV8-2A0A0B4J237 113 aa9.9□□□□□ -0.82
CCDC88A-207ENST00000436346 H0YJW9 148 aa9.9□□□□□ -0.82
CCDC88A-207ENST00000436346 PPBPP02775 128 aa9.9□□□□□ -0.82
CCDC88A-207ENST00000436346 PAX4O43316 350 aa9.9□□□□□ -0.83
CCDC88A-207ENST00000436346 A0A087WWC5 75 aa9.9□□□□□ -0.83
CCDC88A-207ENST00000436346 GATD1Q8NB37 220 aa9.89□□□□□ -0.83
CCDC88A-207ENST00000436346 PSG8Q9UQ74 426 aa9.89□□□□□ -0.83
CCDC88A-207ENST00000436346 HEPN1Q6WQI6 88 aa9.89□□□□□ -0.83
CCDC88A-207ENST00000436346 IGKCP01834 107 aa9.89□□□□□ -0.83
CCDC88A-207ENST00000436346 PSG1P11464 419 aa9.89□□□□□ -0.83
CCDC88A-207ENST00000436346 HOXD3P31249 432 aaPredicted RBP9.89□□□□□ -0.83
CCDC88A-207ENST00000436346 Q8TAT8 98 aa9.89□□□□□ -0.83
CCDC88A-207ENST00000436346 TRGV9Q99603 122 aa9.89□□□□□ -0.83
CCDC88A-207ENST00000436346 RNF166Q96A37 237 aaPredicted RBP9.89□□□□□ -0.83
CCDC88A-207ENST00000436346 RUSC1-AS1Q66K80 236 aa9.89□□□□□ -0.83
CCDC88A-207ENST00000436346 MS4A6AQ9H2W1 248 aa9.89□□□□□ -0.83
CCDC88A-207ENST00000436346 SRP19P09132 144 aaKnown RBP9.88□□□□□ -0.83
CCDC88A-207ENST00000436346 CD177Q8N6Q3 437 aa9.88□□□□□ -0.83
CCDC88A-207ENST00000436346 SLC25A16P16260 332 aa9.88□□□□□ -0.83
CCDC88A-207ENST00000436346 CCL20P78556 96 aa9.88□□□□□ -0.83
CCDC88A-207ENST00000436346 TEX43Q6ZNM6 134 aa9.88□□□□□ -0.83
CCDC88A-207ENST00000436346 TRAV5A0A0B4J249 113 aa9.88□□□□□ -0.83
CCDC88A-207ENST00000436346 KLF17Q5JT82 389 aaPredicted RBP9.88□□□□□ -0.83
CCDC88A-207ENST00000436346 NHP2Q9NX24 153 aaKnown RBP9.88□□□□□ -0.83
CCDC88A-207ENST00000436346 IGKV1-27A0A075B6S5 117 aa9.88□□□□□ -0.83
CCDC88A-207ENST00000436346 NCR2O95944 276 aa9.88□□□□□ -0.83
CCDC88A-207ENST00000436346 NRN1Q9NPD7 142 aa9.88□□□□□ -0.83
CCDC88A-207ENST00000436346 LAMTOR3Q9UHA4 124 aa9.88□□□□□ -0.83
CCDC88A-207ENST00000436346 LEPROTO15243 131 aa9.88□□□□□ -0.83
CCDC88A-207ENST00000436346 FOXL1Q12952 345 aa9.88□□□□□ -0.83
CCDC88A-207ENST00000436346 C10orf55Q5SWW7 151 aa9.88□□□□□ -0.83
CCDC88A-207ENST00000436346 DAZ1Q9NQZ3 744 aaKnown RBP9.88□□□□□ -0.83
CCDC88A-207ENST00000436346 CSRP3P50461 194 aa9.88□□□□□ -0.83
CCDC88A-207ENST00000436346 TMEM238C9JI98 176 aa9.87□□□□□ -0.83
CCDC88A-207ENST00000436346 INS-IGF2F8WCM5 200 aa9.87□□□□□ -0.83
CCDC88A-207ENST00000436346 SPAG8Q99932 426 aaPredicted RBP9.87□□□□□ -0.83
CCDC88A-207ENST00000436346 D6R8Y8 96 aa9.87□□□□□ -0.83
CCDC88A-207ENST00000436346 F5H768 121 aa9.87□□□□□ -0.83
CCDC88A-207ENST00000436346 C1QTNF9P0C862 333 aa9.87□□□□□ -0.83
CCDC88A-207ENST00000436346 MDS2Q8NDY4 140 aa9.87□□□□□ -0.83
CCDC88A-207ENST00000436346 A6NNC1 897 aa9.87□□□□□ -0.83
CCDC88A-207ENST00000436346 CFHR3Q02985 330 aa9.87□□□□□ -0.83
CCDC88A-207ENST00000436346 C1orf159Q96HA4 380 aa9.87□□□□□ -0.83
CCDC88A-207ENST00000436346 TBX6O95947 436 aaPredicted RBP9.87□□□□□ -0.83
CCDC88A-207ENST00000436346 RPL36AP83881 106 aaKnown RBP9.87□□□□□ -0.83
CCDC88A-207ENST00000436346 C1QL4Q86Z23 238 aa9.87□□□□□ -0.83
CCDC88A-207ENST00000436346 RPL36ALQ969Q0 106 aaKnown RBP9.87□□□□□ -0.83
CCDC88A-207ENST00000436346 DMRT1Q9Y5R6 373 aa9.87□□□□□ -0.83
CCDC88A-207ENST00000436346 GNB1LQ9BYB4 327 aa9.87□□□□□ -0.83
CCDC88A-207ENST00000436346 NEUROG3Q9Y4Z2 214 aa9.87□□□□□ -0.83
CCDC88A-207ENST00000436346 EREGO14944 169 aa9.87□□□□□ -0.83
CCDC88A-207ENST00000436346 GAFA1Q96PS6 74 aa9.87□□□□□ -0.83
CCDC88A-207ENST00000436346 A0A087WWL8 130 aa9.86□□□□□ -0.83
CCDC88A-207ENST00000436346 CGB3P0DN86 165 aa9.86□□□□□ -0.83
CCDC88A-207ENST00000436346 SYNJ2BPP57105 145 aa9.86□□□□□ -0.83
CCDC88A-207ENST00000436346 LCN12Q6JVE5 192 aa9.86□□□□□ -0.83
CCDC88A-207ENST00000436346 SHISA3A0PJX4 238 aa9.86□□□□□ -0.83
CCDC88A-207ENST00000436346 LSM4Q9Y4Z0 139 aaKnown RBP9.86□□□□□ -0.83
CCDC88A-207ENST00000436346 JMJD1CQ15652 2540 aa9.86□□□□□ -0.83
CCDC88A-207ENST00000436346 COL8A2P25067 703 aa9.86□□□□□ -0.83
CCDC88A-207ENST00000436346 CD300EQ496F6 205 aaPredicted RBP9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms