RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 TAF9BQ9HBM6 251 aa2.54□□□□□ -2
BRCA1-204ENST00000412061 MARCOQ9UEW3 520 aaPredicted RBP2.54□□□□□ -2
BRCA1-204ENST00000412061 PRO0461Q9UI25 63 aa2.54□□□□□ -2
BRCA1-204ENST00000412061 MYO16Q9Y6X6 1858 aa2.54□□□□□ -2
BRCA1-204ENST00000412061 TCOF1Q13428 1488 aaKnown RBP2.54□□□□□ -2
BRCA1-204ENST00000412061 TRPM1Q7Z4N2 1603 aa2.54□□□□□ -2
BRCA1-204ENST00000412061 RTL9Q8NET4 1388 aa2.53□□□□□ -2
BRCA1-204ENST00000412061 PTPRGP23470 1445 aa2.53□□□□□ -2
BRCA1-204ENST00000412061 IGHV3-64A0A075B6Q5 118 aa2.53□□□□□ -2
BRCA1-204ENST00000412061 TRAV3A0A0B4J244 114 aa2.53□□□□□ -2
BRCA1-204ENST00000412061 TRBV27A0A0K0K1C4 114 aa2.53□□□□□ -2
BRCA1-204ENST00000412061 LRCOL1A6NCL2 159 aa2.53□□□□□ -2
BRCA1-204ENST00000412061 F8W036 122 aa2.53□□□□□ -2
BRCA1-204ENST00000412061 G3V3Q6 166 aa2.53□□□□□ -2
BRCA1-204ENST00000412061 GNG7O60262 68 aa2.53□□□□□ -2
BRCA1-204ENST00000412061 CSRP1P21291 193 aaKnown RBP2.53□□□□□ -2
BRCA1-204ENST00000412061 HINT1P49773 126 aaPredicted RBP2.53□□□□□ -2
BRCA1-204ENST00000412061 LINC00315P59091 139 aa2.53□□□□□ -2
BRCA1-204ENST00000412061 KLRD1Q13241 179 aa2.53□□□□□ -2
BRCA1-204ENST00000412061 NNATQ16517 81 aa2.53□□□□□ -2
BRCA1-204ENST00000412061 WHAMMP3Q1A5X7 153 aa2.53□□□□□ -2
BRCA1-204ENST00000412061 HSD17B12Q53GQ0 312 aa2.53□□□□□ -2
BRCA1-204ENST00000412061 OR4S1Q8NGB4 309 aa2.53□□□□□ -2
BRCA1-204ENST00000412061 OR5A2Q8NGI9 324 aa2.53□□□□□ -2
BRCA1-204ENST00000412061 ZNF418Q8TF45 676 aaPredicted RBP2.53□□□□□ -2
BRCA1-204ENST00000412061 NAT14Q8WUY8 206 aa2.53□□□□□ -2
BRCA1-204ENST00000412061 ARL11Q969Q4 196 aa2.53□□□□□ -2
BRCA1-204ENST00000412061 NIT2Q9NQR4 276 aa2.53□□□□□ -2
BRCA1-204ENST00000412061 SCAF11Q99590 1463 aaKnown RBP2.53□□□□□ -2
BRCA1-204ENST00000412061 PTPRBP23467 1997 aa2.53□□□□□ -2
BRCA1-204ENST00000412061 GPR179Q6PRD1 2367 aa2.53□□□□□ -2.01
BRCA1-204ENST00000412061 SBF1O95248 1867 aa2.53□□□□□ -2.01
BRCA1-204ENST00000412061 ROCK2O75116 1388 aaKnown RBP2.53□□□□□ -2.01
BRCA1-204ENST00000412061 IBTKQ9P2D0 1353 aaPredicted RBP2.53□□□□□ -2.01
BRCA1-204ENST00000412061 DISP2A7MBM2 1401 aa2.52□□□□□ -2.01
BRCA1-204ENST00000412061 IGKV1D-42A0A075B6H8 117 aa2.52□□□□□ -2.01
BRCA1-204ENST00000412061 HMSDA8MTL9 139 aa2.52□□□□□ -2.01
BRCA1-204ENST00000412061 A8MWV9 139 aa2.52□□□□□ -2.01
BRCA1-204ENST00000412061 ODF3BA8MYP8 253 aa2.52□□□□□ -2.01
BRCA1-204ENST00000412061 METTL15P1P0C7V9 234 aa2.52□□□□□ -2.01
BRCA1-204ENST00000412061 ZNF705BP0CI00 300 aaPredicted RBP2.52□□□□□ -2.01
BRCA1-204ENST00000412061 LINC00694P0DN24 101 aa2.52□□□□□ -2.01
BRCA1-204ENST00000412061 TMEM258P61165 79 aa2.52□□□□□ -2.01
BRCA1-204ENST00000412061 ZNF90Q03938 601 aa2.52□□□□□ -2.01
BRCA1-204ENST00000412061 HES1Q14469 280 aa2.52□□□□□ -2.01
BRCA1-204ENST00000412061 LY6EQ16553 131 aa2.52□□□□□ -2.01
BRCA1-204ENST00000412061 Q6ZQT0 140 aa2.52□□□□□ -2.01
BRCA1-204ENST00000412061 DEFB128Q7Z7B8 93 aa2.52□□□□□ -2.01
BRCA1-204ENST00000412061 CTAGE3PQ8IX95 158 aa2.52□□□□□ -2.01
BRCA1-204ENST00000412061 OR4C6Q8NH72 309 aa2.52□□□□□ -2.01
BRCA1-204ENST00000412061 CMTM2Q8TAZ6 248 aa2.52□□□□□ -2.01
BRCA1-204ENST00000412061 MAGOHBQ96A72 148 aaKnown RBP2.52□□□□□ -2.01
BRCA1-204ENST00000412061 PKMYT1Q99640 499 aa2.52□□□□□ -2.01
BRCA1-204ENST00000412061 NHP2Q9NX24 153 aaKnown RBP2.52□□□□□ -2.01
BRCA1-204ENST00000412061 DLC1Q96QB1 1528 aa2.52□□□□□ -2.01
BRCA1-204ENST00000412061 PHLPP1O60346 1717 aa2.52□□□□□ -2.01
BRCA1-204ENST00000412061 ADGRL1O94910 1474 aa2.51□□□□□ -2.01
BRCA1-204ENST00000412061 OR51F1A6NGY5 319 aa2.51□□□□□ -2.01
BRCA1-204ENST00000412061 RTL8CO15255 209 aa2.51□□□□□ -2.01
BRCA1-204ENST00000412061 PRB2P02812 416 aaPredicted RBP2.51□□□□□ -2.01
BRCA1-204ENST00000412061 TCRAP04437 139 aa2.51□□□□□ -2.01
BRCA1-204ENST00000412061 CTSDP07339 412 aaPredicted RBP2.51□□□□□ -2.01
BRCA1-204ENST00000412061 CTSGP08311 255 aa2.51□□□□□ -2.01
BRCA1-204ENST00000412061 IGLC6P0CF74 106 aa2.51□□□□□ -2.01
BRCA1-204ENST00000412061 FOXA3P55318 350 aaPredicted RBP2.51□□□□□ -2.01
BRCA1-204ENST00000412061 ERHP84090 104 aaKnown RBP2.51□□□□□ -2.01
BRCA1-204ENST00000412061 TAF9Q16594 264 aa2.51□□□□□ -2.01
BRCA1-204ENST00000412061 ESRGQ1W209 222 aa2.51□□□□□ -2.01
BRCA1-204ENST00000412061 MMGT1Q8N4V1 131 aa2.51□□□□□ -2.01
BRCA1-204ENST00000412061 MORN4Q8NDC4 146 aa2.51□□□□□ -2.01
BRCA1-204ENST00000412061 OR4B1Q8NGF8 309 aa2.51□□□□□ -2.01
BRCA1-204ENST00000412061 MCEEQ96PE7 176 aa2.51□□□□□ -2.01
BRCA1-204ENST00000412061 RETNLBQ9BQ08 111 aa2.51□□□□□ -2.01
BRCA1-204ENST00000412061 LINC00467Q9BRT7 94 aa2.51□□□□□ -2.01
BRCA1-204ENST00000412061 LINC00470Q9BZP3 86 aa2.51□□□□□ -2.01
BRCA1-204ENST00000412061 CYTL1Q9NRR1 136 aa2.51□□□□□ -2.01
BRCA1-204ENST00000412061 SYNJ1O43426 1573 aa2.51□□□□□ -2.01
BRCA1-204ENST00000412061 KDM5CP41229 1560 aa2.51□□□□□ -2.01
BRCA1-204ENST00000412061 FAM135BQ49AJ0 1406 aa2.51□□□□□ -2.01
BRCA1-204ENST00000412061 TNS3Q68CZ2 1445 aa2.51□□□□□ -2.01
BRCA1-204ENST00000412061 PRG4Q92954 1404 aaPredicted RBP2.51□□□□□ -2.01
BRCA1-204ENST00000412061 MYH7P12883 1935 aa2.5□□□□□ -2.01
BRCA1-204ENST00000412061 ZFC3H1O60293 1989 aaKnown RBP2.5□□□□□ -2.01
BRCA1-204ENST00000412061 POLEQ07864 2286 aa2.5□□□□□ -2.01
BRCA1-204ENST00000412061 CCDC88CQ9P219 2028 aa2.5□□□□□ -2.01
BRCA1-204ENST00000412061 IGF2P01344 180 aa2.5□□□□□ -2.01
BRCA1-204ENST00000412061 TSPAN19P0C672 248 aa2.5□□□□□ -2.01
BRCA1-204ENST00000412061 AQP4P55087 323 aa2.5□□□□□ -2.01
BRCA1-204ENST00000412061 COPZ1P61923 177 aa2.5□□□□□ -2.01
BRCA1-204ENST00000412061 SELENOWP63302 87 aa2.5□□□□□ -2.01
BRCA1-204ENST00000412061 DIRC1Q969H9 104 aa2.5□□□□□ -2.01
BRCA1-204ENST00000412061 CHCHD1Q96BP2 118 aaKnown RBP2.5□□□□□ -2.01
BRCA1-204ENST00000412061 GGACTQ9BVM4 153 aa2.5□□□□□ -2.01
BRCA1-204ENST00000412061 TAS2R4Q9NYW5 299 aa2.5□□□□□ -2.01
BRCA1-204ENST00000412061 SMARCA2P51531 1590 aa2.5□□□□□ -2.01
BRCA1-204ENST00000412061 FRMPD1Q5SYB0 1578 aa2.5□□□□□ -2.01
BRCA1-204ENST00000412061 KDM5BQ9UGL1 1544 aa2.49□□□□□ -2.01
BRCA1-204ENST00000412061 TMSB15BA0A087X1C1 80 aa2.49□□□□□ -2.01
BRCA1-204ENST00000412061 FAM25AB3EWG3 89 aa2.49□□□□□ -2.01
BRCA1-204ENST00000412061 FAM25CB3EWG5 89 aa2.49□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms