RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 GBF1Q92538 1859 aa4.96□□□□□ -1.61
SCN1A-203ENST00000409050 IFITM1P13164 125 aa4.96□□□□□ -1.61
SCN1A-203ENST00000409050 PRIMA1Q86XR5 153 aa4.96□□□□□ -1.61
SCN1A-203ENST00000409050 ARID2Q68CP9 1835 aa4.96□□□□□ -1.61
SCN1A-203ENST00000409050 SMIM27A0A1W2PRY6 76 aa4.96□□□□□ -1.62
SCN1A-203ENST00000409050 CD55P08174 381 aa4.96□□□□□ -1.62
SCN1A-203ENST00000409050 HERV-K104P63124 156 aa4.96□□□□□ -1.62
SCN1A-203ENST00000409050 MPV17L2Q567V2 206 aa4.96□□□□□ -1.62
SCN1A-203ENST00000409050 SMIM20Q8N5G0 67 aa4.96□□□□□ -1.62
SCN1A-203ENST00000409050 DEPPQ9NTK1 212 aa4.96□□□□□ -1.62
SCN1A-203ENST00000409050 TAF1LQ8IZX4 1826 aa4.96□□□□□ -1.62
SCN1A-203ENST00000409050 NDUFA4O00483 81 aa4.96□□□□□ -1.62
SCN1A-203ENST00000409050 IGHV3-48P01763 117 aa4.96□□□□□ -1.62
SCN1A-203ENST00000409050 CEACAM8P31997 349 aaPredicted RBP4.96□□□□□ -1.62
SCN1A-203ENST00000409050 UBE2E1P51965 193 aa4.96□□□□□ -1.62
SCN1A-203ENST00000409050 HERVK_113P63121 156 aa4.96□□□□□ -1.62
SCN1A-203ENST00000409050 OCIAD2Q56VL3 154 aa4.96□□□□□ -1.62
SCN1A-203ENST00000409050 ADAMTSL5Q6ZMM2 481 aa4.96□□□□□ -1.62
SCN1A-203ENST00000409050 VSIRQ9H7M9 311 aa4.96□□□□□ -1.62
SCN1A-203ENST00000409050 RP1L1Q8IWN7 2480 aaPredicted RBP4.96□□□□□ -1.62
SCN1A-203ENST00000409050 IGKV1D-8A0A087WSZ0 117 aa4.96□□□□□ -1.62
SCN1A-203ENST00000409050 SRRM4A7MD48 611 aaKnown RBP4.96□□□□□ -1.62
SCN1A-203ENST00000409050 HLA-DRB4P13762 266 aa4.96□□□□□ -1.62
SCN1A-203ENST00000409050 C9orf153Q5TBE3 101 aa4.96□□□□□ -1.62
SCN1A-203ENST00000409050 THAP8Q8NA92 274 aa4.96□□□□□ -1.62
SCN1A-203ENST00000409050 ZNF319Q9P2F9 582 aa4.96□□□□□ -1.62
SCN1A-203ENST00000409050 HLA-DRB4X5D2U9 266 aa4.96□□□□□ -1.62
SCN1A-203ENST00000409050 CCDC88CQ9P219 2028 aa4.96□□□□□ -1.62
SCN1A-203ENST00000409050 TRAV8-1A0A0A6YYK1 113 aa4.96□□□□□ -1.62
SCN1A-203ENST00000409050 PRSS47A8MTI9 375 aa4.96□□□□□ -1.62
SCN1A-203ENST00000409050 IGHV3-23P01764 117 aa4.96□□□□□ -1.62
SCN1A-203ENST00000409050 NTF4P34130 210 aa4.96□□□□□ -1.62
SCN1A-203ENST00000409050 C1orf122Q6ZSJ8 110 aa4.96□□□□□ -1.62
SCN1A-203ENST00000409050 ZNF48Q96MX3 618 aaPredicted RBP4.96□□□□□ -1.62
SCN1A-203ENST00000409050 SCRT1Q9BWW7 348 aa4.96□□□□□ -1.62
SCN1A-203ENST00000409050 NRXN2Q9P2S2 1712 aa4.95□□□□□ -1.62
SCN1A-203ENST00000409050 TRBV25-1A0A075B6N4 114 aa4.95□□□□□ -1.62
SCN1A-203ENST00000409050 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-203ENST00000409050 HIST1H4AP62805 103 aaKnown RBP4.95□□□□□ -1.62
SCN1A-203ENST00000409050 ZNF833PQ6ZTB9 187 aa4.95□□□□□ -1.62
SCN1A-203ENST00000409050 ZNF664Q8N3J9 261 aa4.95□□□□□ -1.62
SCN1A-203ENST00000409050 STPG4Q8N801 248 aa4.95□□□□□ -1.62
SCN1A-203ENST00000409050 C18orf32Q8TCD1 76 aa4.95□□□□□ -1.62
SCN1A-203ENST00000409050 SPRR3Q9UBC9 169 aa4.95□□□□□ -1.62
SCN1A-203ENST00000409050 LSM4Q9Y4Z0 139 aaKnown RBP4.95□□□□□ -1.62
SCN1A-203ENST00000409050 NUP214P35658 2090 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-203ENST00000409050 LOC285556D6RIA3 1793 aa4.95□□□□□ -1.62
SCN1A-203ENST00000409050 WNK3Q9BYP7 1800 aa4.95□□□□□ -1.62
SCN1A-203ENST00000409050 C22orf46C9J442 243 aa4.95□□□□□ -1.62
SCN1A-203ENST00000409050 CTSBP07858 339 aa4.95□□□□□ -1.62
SCN1A-203ENST00000409050 CELA3BP08861 270 aa4.95□□□□□ -1.62
SCN1A-203ENST00000409050 KLF5Q13887 457 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-203ENST00000409050 ZNF493Q6ZR52 646 aa4.95□□□□□ -1.62
SCN1A-203ENST00000409050 SH2D6Q7Z4S9 175 aa4.95□□□□□ -1.62
SCN1A-203ENST00000409050 CD177Q8N6Q3 437 aa4.95□□□□□ -1.62
SCN1A-203ENST00000409050 VWCEQ96DN2 955 aa4.95□□□□□ -1.62
SCN1A-203ENST00000409050 ZNF837Q96EG3 531 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-203ENST00000409050 IGHV3OR16-13A0A075B7E8 117 aa4.95□□□□□ -1.62
SCN1A-203ENST00000409050 IGHV3-74A0A0B4J1X5 117 aa4.95□□□□□ -1.62
SCN1A-203ENST00000409050 TRAV12-3A0A0B4J271 114 aa4.95□□□□□ -1.62
SCN1A-203ENST00000409050 IGHV3-66A0A0C4DH42 116 aa4.95□□□□□ -1.62
SCN1A-203ENST00000409050 IGLC2P0DOY2 106 aa4.95□□□□□ -1.62
SCN1A-203ENST00000409050 IGLC3P0DOY3 106 aa4.95□□□□□ -1.62
SCN1A-203ENST00000409050 EVI2AP22794 236 aa4.95□□□□□ -1.62
SCN1A-203ENST00000409050 COA6Q5JTJ3 125 aaKnown RBP4.95□□□□□ -1.62
SCN1A-203ENST00000409050 LINC01356Q8N9X3 169 aa4.95□□□□□ -1.62
SCN1A-203ENST00000409050 NDUFA4L2Q9NRX3 87 aa4.95□□□□□ -1.62
SCN1A-203ENST00000409050 TRBV19A0A075B6N1 114 aa4.95□□□□□ -1.62
SCN1A-203ENST00000409050 IGKV2-40A0A087WW87 121 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-203ENST00000409050 IGHV3-35A0A0C4DH35 117 aa4.95□□□□□ -1.62
SCN1A-203ENST00000409050 IGKV2D-40P01614 121 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-203ENST00000409050 PTPRFP10586 1907 aa4.95□□□□□ -1.62
SCN1A-203ENST00000409050 F8VRH5 84 aa4.95□□□□□ -1.62
SCN1A-203ENST00000409050 IGKV1-27A0A075B6S5 117 aa4.94□□□□□ -1.62
SCN1A-203ENST00000409050 IGHV3-11P01762 117 aa4.94□□□□□ -1.62
SCN1A-203ENST00000409050 Q6ZS92 163 aa4.94□□□□□ -1.62
SCN1A-203ENST00000409050 TMEM256Q8N2U0 113 aa4.94□□□□□ -1.62
SCN1A-203ENST00000409050 IGHV3-49A0A0A0MS15 119 aa4.94□□□□□ -1.62
SCN1A-203ENST00000409050 C9JAW5 83 aa4.94□□□□□ -1.62
SCN1A-203ENST00000409050 MST1P26927 711 aa4.94□□□□□ -1.62
SCN1A-203ENST00000409050 C2orf66Q6UXQ4 117 aa4.94□□□□□ -1.62
SCN1A-203ENST00000409050 CRIPAKQ8N1N5 446 aa4.94□□□□□ -1.62
SCN1A-203ENST00000409050 MESP1Q9BRJ9 268 aa4.94□□□□□ -1.62
SCN1A-203ENST00000409050 PRO1854Q9UHT4 67 aa4.94□□□□□ -1.62
SCN1A-203ENST00000409050 E9PQ18 207 aa4.94□□□□□ -1.62
SCN1A-203ENST00000409050 H3BRN7 92 aa4.94□□□□□ -1.62
SCN1A-203ENST00000409050 TRACP01848 142 aa4.94□□□□□ -1.62
SCN1A-203ENST00000409050 BVES-AS1Q5T3Y7 98 aa4.94□□□□□ -1.62
SCN1A-203ENST00000409050 TEX36Q5VZQ5 186 aa4.94□□□□□ -1.62
SCN1A-203ENST00000409050 KLHDC3Q9BQ90 382 aa4.94□□□□□ -1.62
SCN1A-203ENST00000409050 RHPN1-AS1Q9BWJ2 59 aa4.94□□□□□ -1.62
SCN1A-203ENST00000409050 COLQQ9Y215 455 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-203ENST00000409050 COL11A2P13942 1736 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-203ENST00000409050 PSPNO60542 156 aa4.94□□□□□ -1.62
SCN1A-203ENST00000409050 IGHV2-5P01817 119 aa4.94□□□□□ -1.62
SCN1A-203ENST00000409050 CLPSP04118 112 aa4.94□□□□□ -1.62
SCN1A-203ENST00000409050 FAM201AQ5SY85 155 aa4.94□□□□□ -1.62
SCN1A-203ENST00000409050 SNHG12Q9BXW3 62 aa4.94□□□□□ -1.62
SCN1A-203ENST00000409050 A0A0G2JMZ2 1700 aa4.94□□□□□ -1.62
SCN1A-203ENST00000409050 LRRC37A2A6NM11 1700 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms