RNA–Protein interactions for RNA: ENST00000355480.9

COL18A1-202, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL18A1, Length 5,924 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-202ENST00000355480 PAX4O43316 350 aa14.68□□□□□ -0.06
COL18A1-202ENST00000355480 MSMBP08118 114 aa14.68□□□□□ -0.06
COL18A1-202ENST00000355480 MAPK1IP1LQ8NDC0 245 aa14.68□□□□□ -0.06
COL18A1-202ENST00000355480 LSM4Q9Y4Z0 139 aaKnown RBP14.68□□□□□ -0.06
COL18A1-202ENST00000355480 PRTN3P24158 256 aa14.68□□□□□ -0.06
COL18A1-202ENST00000355480 GSN-AS1Q9NRJ2 163 aa14.68□□□□□ -0.06
COL18A1-202ENST00000355480 TMEM14EPQ6UXP3 125 aa14.68□□□□□ -0.06
COL18A1-202ENST00000355480 FNDC4Q9H6D8 234 aaPredicted RBP14.68□□□□□ -0.06
COL18A1-202ENST00000355480 DAZ1Q9NQZ3 744 aaKnown RBP14.68□□□□□ -0.06
COL18A1-202ENST00000355480 TRBV6-6A0A0A6YYG2 114 aa14.67□□□□□ -0.06
COL18A1-202ENST00000355480 TOMM40O96008 361 aa14.67□□□□□ -0.06
COL18A1-202ENST00000355480 PSG3Q16557 428 aa14.67□□□□□ -0.06
COL18A1-202ENST00000355480 RNF144BQ7Z419 303 aa14.67□□□□□ -0.06
COL18A1-202ENST00000355480 HIST1H2BKO60814 126 aa14.67□□□□□ -0.06
COL18A1-202ENST00000355480 HIST1H2BJP06899 126 aa14.67□□□□□ -0.06
COL18A1-202ENST00000355480 DEFB130BP0DP73 79 aa14.67□□□□□ -0.06
COL18A1-202ENST00000355480 DEFB130AP0DP74 79 aa14.67□□□□□ -0.06
COL18A1-202ENST00000355480 HIST1H2BOP23527 126 aa14.67□□□□□ -0.06
COL18A1-202ENST00000355480 HIST1H2BBP33778 126 aa14.67□□□□□ -0.06
COL18A1-202ENST00000355480 HIST1H2BDP58876 126 aa14.67□□□□□ -0.06
COL18A1-202ENST00000355480 HIST1H2BCP62807 126 aa14.67□□□□□ -0.06
COL18A1-202ENST00000355480 HIST2H2BEQ16778 126 aa14.67□□□□□ -0.06
COL18A1-202ENST00000355480 HIST2H2BFQ5QNW6 126 aaPredicted RBP14.67□□□□□ -0.06
COL18A1-202ENST00000355480 HIST1H2BHQ93079 126 aa14.67□□□□□ -0.06
COL18A1-202ENST00000355480 C1orf159Q96HA4 380 aa14.67□□□□□ -0.06
COL18A1-202ENST00000355480 HIST1H2BNQ99877 126 aa14.67□□□□□ -0.06
COL18A1-202ENST00000355480 HIST1H2BMQ99879 126 aa14.67□□□□□ -0.06
COL18A1-202ENST00000355480 DERL1Q9BUN8 251 aa14.67□□□□□ -0.06
COL18A1-202ENST00000355480 SMPXQ9UHP9 88 aa14.67□□□□□ -0.06
COL18A1-202ENST00000355480 CLDN16Q9Y5I7 305 aa14.67□□□□□ -0.06
COL18A1-202ENST00000355480 NTF4P34130 210 aa14.67□□□□□ -0.06
COL18A1-202ENST00000355480 GATD1Q8NB37 220 aa14.67□□□□□ -0.06
COL18A1-202ENST00000355480 C14orf178Q8N769 122 aaPredicted RBP14.67□□□□□ -0.06
COL18A1-202ENST00000355480 RPP25LQ8N5L8 163 aaKnown RBP14.66□□□□□ -0.06
COL18A1-202ENST00000355480 POLEQ07864 2286 aa14.66□□□□□ -0.06
COL18A1-202ENST00000355480 TMEM238C9JI98 176 aa14.66□□□□□ -0.06
COL18A1-202ENST00000355480 COL6A6A6NMZ7 2263 aa14.66□□□□□ -0.06
COL18A1-202ENST00000355480 VCYO14598 125 aa14.66□□□□□ -0.06
COL18A1-202ENST00000355480 NCOR1O75376 2440 aa14.66□□□□□ -0.06
COL18A1-202ENST00000355480 ZNF581Q9P0T4 197 aa14.66□□□□□ -0.06
COL18A1-202ENST00000355480 ERCC8Q13216 396 aa14.65□□□□□ -0.06
COL18A1-202ENST00000355480 ORAOV1Q8WV07 137 aa14.65□□□□□ -0.06
COL18A1-202ENST00000355480 RASL10AQ92737 203 aa14.65□□□□□ -0.06
COL18A1-202ENST00000355480 FREM3P0C091 2139 aa14.65□□□□□ -0.06
COL18A1-202ENST00000355480 ERG28Q9UKR5 140 aa14.65□□□□□ -0.06
COL18A1-202ENST00000355480 LINC00587B1AMM8 73 aa14.65□□□□□ -0.06
COL18A1-202ENST00000355480 C6orf226Q5I0X4 101 aa14.65□□□□□ -0.06
COL18A1-202ENST00000355480 DEFB131AP59861 70 aa14.64□□□□□ -0.07
COL18A1-202ENST00000355480 CSTL1Q9H114 145 aa14.64□□□□□ -0.07
COL18A1-202ENST00000355480 RFNGQ9Y644 331 aa14.64□□□□□ -0.07
COL18A1-202ENST00000355480 XIRP1Q702N8 1843 aaKnown RBP14.64□□□□□ -0.07
COL18A1-202ENST00000355480 GATA3P23771 443 aa14.64□□□□□ -0.07
COL18A1-202ENST00000355480 IGKV1-16P04430 117 aa14.64□□□□□ -0.07
COL18A1-202ENST00000355480 GLRX5Q86SX6 157 aa14.64□□□□□ -0.07
COL18A1-202ENST00000355480 TRAV8-1A0A0A6YYK1 113 aa14.64□□□□□ -0.07
COL18A1-202ENST00000355480 ATXN8Q156A1 80 aa14.64□□□□□ -0.07
COL18A1-202ENST00000355480 LINC01551Q86U37 167 aa14.64□□□□□ -0.07
COL18A1-202ENST00000355480 PLEKHB2Q96CS7 222 aa14.64□□□□□ -0.07
COL18A1-202ENST00000355480 Q96MF0 132 aa14.64□□□□□ -0.07
COL18A1-202ENST00000355480 TRAV1-1A0A0B4J248 108 aa14.63□□□□□ -0.07
COL18A1-202ENST00000355480 LINC01559Q495D7 138 aa14.63□□□□□ -0.07
COL18A1-202ENST00000355480 DMRTC2Q8IXT2 367 aaPredicted RBP14.63□□□□□ -0.07
COL18A1-202ENST00000355480 A0A087WWL8 130 aa14.63□□□□□ -0.07
COL18A1-202ENST00000355480 RNASE2P10153 161 aaKnown RBP14.63□□□□□ -0.07
COL18A1-202ENST00000355480 LYPD1Q8N2G4 141 aa14.63□□□□□ -0.07
COL18A1-202ENST00000355480 TRPM7Q96QT4 1865 aa14.63□□□□□ -0.07
COL18A1-202ENST00000355480 SEC11AP67812 179 aa14.63□□□□□ -0.07
COL18A1-202ENST00000355480 CACNA1BQ00975 2339 aa14.63□□□□□ -0.07
COL18A1-202ENST00000355480 CYTL1Q9NRR1 136 aa14.63□□□□□ -0.07
COL18A1-202ENST00000355480 TMEM242Q9NWH2 141 aa14.63□□□□□ -0.07
COL18A1-202ENST00000355480 UBE2E1P51965 193 aa14.62□□□□□ -0.07
COL18A1-202ENST00000355480 ZNF479Q96JC4 524 aa14.62□□□□□ -0.07
COL18A1-202ENST00000355480 MED12Q93074 2177 aa14.62□□□□□ -0.07
COL18A1-202ENST00000355480 MYO7BQ6PIF6 2116 aa14.62□□□□□ -0.07
COL18A1-202ENST00000355480 TRAV13-1A0A0B4J241 112 aa14.62□□□□□ -0.07
COL18A1-202ENST00000355480 A6NNC1 897 aa14.62□□□□□ -0.07
COL18A1-202ENST00000355480 MLANAQ16655 118 aa14.62□□□□□ -0.07
COL18A1-202ENST00000355480 CDK2AP2O75956 126 aa14.62□□□□□ -0.07
COL18A1-202ENST00000355480 MEGF9Q9H1U4 602 aa14.62□□□□□ -0.07
COL18A1-202ENST00000355480 A0A1B0GV72 72 aa14.62□□□□□ -0.07
COL18A1-202ENST00000355480 C15orf62A8K5M9 175 aa14.62□□□□□ -0.07
COL18A1-202ENST00000355480 TNFSF13O75888 250 aa14.62□□□□□ -0.07
COL18A1-202ENST00000355480 RIF1Q5UIP0 2472 aaKnown RBP14.61□□□□□ -0.07
COL18A1-202ENST00000355480 RPRMLQ8N4K4 120 aa14.61□□□□□ -0.07
COL18A1-202ENST00000355480 ATP6V0E1O15342 81 aa14.61□□□□□ -0.07
COL18A1-202ENST00000355480 HSD52Q0P140 79 aa14.61□□□□□ -0.07
COL18A1-202ENST00000355480 FOXL2NBQ6ZUU3 175 aa14.61□□□□□ -0.07
COL18A1-202ENST00000355480 NUP35Q8NFH5 326 aa14.61□□□□□ -0.07
COL18A1-202ENST00000355480 ZNRD1Q9P1U0 126 aa14.61□□□□□ -0.07
COL18A1-202ENST00000355480 TRAV8-4A0A0B4J246 113 aa14.61□□□□□ -0.07
COL18A1-202ENST00000355480 CXCL1P09341 107 aa14.61□□□□□ -0.07
COL18A1-202ENST00000355480 LTBP1Q14766 1721 aa14.61□□□□□ -0.07
COL18A1-202ENST00000355480 SRSF8Q9BRL6 282 aaKnown RBP14.6□□□□□ -0.07
COL18A1-202ENST00000355480 TRBV24-1A0A075B6N3 115 aa14.6□□□□□ -0.07
COL18A1-202ENST00000355480 QRFPP83859 136 aa14.6□□□□□ -0.07
COL18A1-202ENST00000355480 RASL11AQ6T310 242 aa14.6□□□□□ -0.07
COL18A1-202ENST00000355480 A8MWV9 139 aa14.6□□□□□ -0.07
COL18A1-202ENST00000355480 PCP4P48539 62 aa14.6□□□□□ -0.07
COL18A1-202ENST00000355480 TRAV16A0A0A6YYK6 109 aaPredicted RBP14.59□□□□□ -0.07
COL18A1-202ENST00000355480 IGHV1-69DA0A0B4J2H0 117 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 111.1 ms