RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 Q96MF0 132 aa5.5□□□□□ -1.53
SF3B1-201ENST00000335508 SHANK2-AS3Q9BTD1 123 aa5.5□□□□□ -1.53
SF3B1-201ENST00000335508 TMEM131Q92545 1883 aa5.5□□□□□ -1.53
SF3B1-201ENST00000335508 IGFBPL1Q8WX77 278 aa5.5□□□□□ -1.53
SF3B1-201ENST00000335508 SMIM12Q96EX1 92 aa5.5□□□□□ -1.53
SF3B1-201ENST00000335508 CLUHP3Q96NS8 147 aa5.5□□□□□ -1.53
SF3B1-201ENST00000335508 TCRAP04437 139 aa5.5□□□□□ -1.53
SF3B1-201ENST00000335508 SNRPCP09234 159 aaKnown RBP5.5□□□□□ -1.53
SF3B1-201ENST00000335508 IQCJQ1A5X6 159 aa5.5□□□□□ -1.53
SF3B1-201ENST00000335508 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa5.5□□□□□ -1.53
SF3B1-201ENST00000335508 Q9H3A6 140 aa5.5□□□□□ -1.53
SF3B1-201ENST00000335508 SS18L2Q9UHA2 77 aa5.5□□□□□ -1.53
SF3B1-201ENST00000335508 IGSF10Q6WRI0 2623 aa5.5□□□□□ -1.53
SF3B1-201ENST00000335508 ATP6V0E1O15342 81 aa5.5□□□□□ -1.53
SF3B1-201ENST00000335508 PROP1O75360 226 aa5.5□□□□□ -1.53
SF3B1-201ENST00000335508 IGLC1P0CG04 106 aa5.5□□□□□ -1.53
SF3B1-201ENST00000335508 IER3P46695 156 aa5.5□□□□□ -1.53
SF3B1-201ENST00000335508 C5orf24Q7Z6I8 188 aa5.5□□□□□ -1.53
SF3B1-201ENST00000335508 AP5S1Q9NUS5 200 aa5.5□□□□□ -1.53
SF3B1-201ENST00000335508 PSG8Q9UQ74 426 aa5.5□□□□□ -1.53
SF3B1-201ENST00000335508 ADAMTS9Q9P2N4 1935 aa5.5□□□□□ -1.53
SF3B1-201ENST00000335508 IGHV4-30-2A0A087WSY4 118 aa5.49□□□□□ -1.53
SF3B1-201ENST00000335508 TRAV21A0A0B4J279 112 aa5.49□□□□□ -1.53
SF3B1-201ENST00000335508 IGLC7A0M8Q6 106 aa5.49□□□□□ -1.53
SF3B1-201ENST00000335508 TOMM40O96008 361 aa5.49□□□□□ -1.53
SF3B1-201ENST00000335508 DYSFO75923 2080 aa5.49□□□□□ -1.53
SF3B1-201ENST00000335508 TNFRSF13BO14836 293 aaPredicted RBP5.49□□□□□ -1.53
SF3B1-201ENST00000335508 AMY1AP04745 511 aa5.49□□□□□ -1.53
SF3B1-201ENST00000335508 PRR20EP86478 221 aa5.49□□□□□ -1.53
SF3B1-201ENST00000335508 PRR20CP86479 221 aa5.49□□□□□ -1.53
SF3B1-201ENST00000335508 PRR20DP86480 221 aa5.49□□□□□ -1.53
SF3B1-201ENST00000335508 PRR20BP86481 221 aa5.49□□□□□ -1.53
SF3B1-201ENST00000335508 PRR20AP86496 221 aa5.49□□□□□ -1.53
SF3B1-201ENST00000335508 MST1LQ2TV78 715 aa5.49□□□□□ -1.53
SF3B1-201ENST00000335508 RHPN1-AS1Q9BWJ2 59 aa5.49□□□□□ -1.53
SF3B1-201ENST00000335508 TMSB15BA0A087X1C1 80 aa5.49□□□□□ -1.53
SF3B1-201ENST00000335508 OVOL3O00110 214 aa5.49□□□□□ -1.53
SF3B1-201ENST00000335508 C22orf34Q6ZV56 151 aa5.49□□□□□ -1.53
SF3B1-201ENST00000335508 LINC00477Q96M19 166 aa5.49□□□□□ -1.53
SF3B1-201ENST00000335508 SLC25A39Q9BZJ4 359 aaPredicted RBP5.49□□□□□ -1.53
SF3B1-201ENST00000335508 FAM231BA6NCW3 169 aa5.49□□□□□ -1.53
SF3B1-201ENST00000335508 SPINK4O60575 86 aa5.49□□□□□ -1.53
SF3B1-201ENST00000335508 ELOBQ15370 118 aa5.49□□□□□ -1.53
SF3B1-201ENST00000335508 AURKAIP1Q9NWT8 199 aaPredicted RBP5.49□□□□□ -1.53
SF3B1-201ENST00000335508 LINC00527Q9UJ94 153 aa5.49□□□□□ -1.53
SF3B1-201ENST00000335508 NDUFA4O00483 81 aa5.49□□□□□ -1.53
SF3B1-201ENST00000335508 DUX5Q96PT3 197 aa5.49□□□□□ -1.53
SF3B1-201ENST00000335508 IGHV3-49A0A0A0MS15 119 aa5.48□□□□□ -1.53
SF3B1-201ENST00000335508 TMEM238LA0A1B0GVL6 79 aa5.48□□□□□ -1.53
SF3B1-201ENST00000335508 PMS2P5A8MQ11 134 aa5.48□□□□□ -1.53
SF3B1-201ENST00000335508 FABP4P15090 132 aa5.48□□□□□ -1.53
SF3B1-201ENST00000335508 BTF3P20290 206 aaKnown RBP5.48□□□□□ -1.53
SF3B1-201ENST00000335508 HBBP68871 147 aa5.48□□□□□ -1.53
SF3B1-201ENST00000335508 ZNF343Q6P1L6 599 aa5.48□□□□□ -1.53
SF3B1-201ENST00000335508 SFRP2Q96HF1 295 aa5.48□□□□□ -1.53
SF3B1-201ENST00000335508 MRPL27Q9P0M9 148 aaKnown RBP5.48□□□□□ -1.53
SF3B1-201ENST00000335508 LENEPQ9Y5L5 61 aa5.48□□□□□ -1.53
SF3B1-201ENST00000335508 SRRM4A7MD48 611 aaKnown RBP5.48□□□□□ -1.53
SF3B1-201ENST00000335508 NDUFA3O95167 84 aa5.48□□□□□ -1.53
SF3B1-201ENST00000335508 AMBPP02760 352 aa5.48□□□□□ -1.53
SF3B1-201ENST00000335508 MAP1AP78559 2803 aaPredicted RBP5.48□□□□□ -1.53
SF3B1-201ENST00000335508 CKS2P33552 79 aa5.48□□□□□ -1.53
SF3B1-201ENST00000335508 EMP1P54849 157 aa5.48□□□□□ -1.53
SF3B1-201ENST00000335508 LINC00518Q8N0U6 118 aa5.48□□□□□ -1.53
SF3B1-201ENST00000335508 H3BTX0 84 aa5.48□□□□□ -1.53
SF3B1-201ENST00000335508 PRB1P04280 392 aa5.48□□□□□ -1.53
SF3B1-201ENST00000335508 ZNF138P52744 262 aa5.48□□□□□ -1.53
SF3B1-201ENST00000335508 PLP1P60201 277 aa5.48□□□□□ -1.53
SF3B1-201ENST00000335508 KIR2DL4Q99706 377 aa5.48□□□□□ -1.53
SF3B1-201ENST00000335508 WFDC1Q9HC57 220 aa5.48□□□□□ -1.53
SF3B1-201ENST00000335508 ASIPP42127 132 aa5.48□□□□□ -1.53
SF3B1-201ENST00000335508 ATP5G3P48201 142 aa5.48□□□□□ -1.53
SF3B1-201ENST00000335508 LINC00205P59089 165 aa5.48□□□□□ -1.53
SF3B1-201ENST00000335508 LSM4Q9Y4Z0 139 aaKnown RBP5.48□□□□□ -1.53
SF3B1-201ENST00000335508 H0Y8G0 127 aa5.48□□□□□ -1.53
SF3B1-201ENST00000335508 PYYP10082 97 aa5.48□□□□□ -1.53
SF3B1-201ENST00000335508 RPL23P62829 140 aaKnown RBP5.48□□□□□ -1.53
SF3B1-201ENST00000335508 PRB3Q04118 309 aaPredicted RBP5.48□□□□□ -1.53
SF3B1-201ENST00000335508 FOXL1Q12952 345 aa5.48□□□□□ -1.53
SF3B1-201ENST00000335508 ZNF329Q86UD4 541 aa5.48□□□□□ -1.53
SF3B1-201ENST00000335508 MGST2Q99735 147 aa5.48□□□□□ -1.53
SF3B1-201ENST00000335508 SIRPDQ9H106 197 aa5.48□□□□□ -1.53
SF3B1-201ENST00000335508 S4R3C0 116 aa5.48□□□□□ -1.53
SF3B1-201ENST00000335508 IGKV1-17P01599 117 aa5.47□□□□□ -1.53
SF3B1-201ENST00000335508 GCSHP23434 173 aa5.47□□□□□ -1.53
SF3B1-201ENST00000335508 EBI3Q14213 229 aa5.47□□□□□ -1.53
SF3B1-201ENST00000335508 LDLRAD2Q5SZI1 272 aa5.47□□□□□ -1.53
SF3B1-201ENST00000335508 C11orf52Q96A22 123 aa5.47□□□□□ -1.53
SF3B1-201ENST00000335508 PACRGQ96M98 296 aaPredicted RBP5.47□□□□□ -1.53
SF3B1-201ENST00000335508 TMEM70Q9BUB7 260 aa5.47□□□□□ -1.53
SF3B1-201ENST00000335508 F2Z2F3 143 aa5.47□□□□□ -1.53
SF3B1-201ENST00000335508 PRSS1P07477 247 aa5.47□□□□□ -1.53
SF3B1-201ENST00000335508 RRN3P1Q2M238 152 aa5.47□□□□□ -1.53
SF3B1-201ENST00000335508 NPBQ8NG41 125 aa5.47□□□□□ -1.53
SF3B1-201ENST00000335508 IGHV3OR16-8A0A075B7F1 116 aa5.47□□□□□ -1.53
SF3B1-201ENST00000335508 IGHG2P01859 326 aa5.47□□□□□ -1.53
SF3B1-201ENST00000335508 RPLP1P05386 114 aaKnown RBP5.47□□□□□ -1.53
SF3B1-201ENST00000335508 OR5AL1P0C617 328 aa5.47□□□□□ -1.53
SF3B1-201ENST00000335508 TOMM20LQ6UXN7 152 aa5.47□□□□□ -1.53
SF3B1-201ENST00000335508 TMEM136Q6ZRR5 245 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms