RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 AKR1C2P52895 323 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 CKS1BP61024 79 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 PPP3R1P63098 170 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 HERVK_113P63121 156 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 HLA-DRB3P79483 266 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 DCDP81605 110 aaKnown RBP1.63□□□□□ -2.15
HMGB1-201ENST00000326004 EMX1Q04741 257 aaPredicted RBP1.63□□□□□ -2.15
HMGB1-201ENST00000326004 TAF9Q16594 264 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 HIST3H3Q16695 136 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 CCSMST1Q4G0I0 132 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 PYCR3Q53H96 274 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 PYDC2Q56P42 97 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 OCIAD2Q56VL3 154 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 COL5A1-AS1Q5SY13 56 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 ALKAL2Q6UX46 152 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 BRD3OSQ6XYD6 125 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 SLC35E3Q7Z769 313 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 NIT1Q86X76 327 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 ZNF567Q8N184 647 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 ZNF664Q8N3J9 261 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 CLDN22Q8N7P3 220 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 FER1L6-AS1Q8NA97 138 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 PXT1Q8NFP0 134 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 C1orf54Q8WWF1 131 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 C11orf40Q8WZ69 217 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 HIST1H2BAQ96A08 127 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 IMP4Q96G21 291 aaKnown RBP1.63□□□□□ -2.15
HMGB1-201ENST00000326004 SFRP2Q96HF1 295 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 ERMAPQ96PL5 475 aaPredicted RBP1.63□□□□□ -2.15
HMGB1-201ENST00000326004 TP53RKQ96S44 253 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 TBX5Q99593 518 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 PKMYT1Q99640 499 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 AIF1LQ9BQI0 150 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 TM2D3Q9BRN9 247 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 GINS4Q9BRT9 223 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 OR2J1Q9GZK6 312 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 C20orf27Q9GZN8 174 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 EIF5A2Q9GZV4 153 aaKnown RBP1.63□□□□□ -2.15
HMGB1-201ENST00000326004 GABARAPL1Q9H0R8 117 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 ABCG5Q9H222 651 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 ZNF286AQ9HBT8 521 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 CTNNBIP1Q9NSA3 81 aaPredicted RBP1.63□□□□□ -2.15
HMGB1-201ENST00000326004 CBLN4Q9NTU7 201 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 ASF1BQ9NVP2 202 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 SS18L2Q9UHA2 77 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 SMPXQ9UHP9 88 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 ANGPT4Q9Y264 503 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 SLC35A3Q9Y2D2 325 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 ZNF337Q9Y3M9 751 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 MYH2Q9UKX2 1941 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 MEGF8Q7Z7M0 2845 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 KMT2CQ8NEZ4 4911 aaKnown RBP1.63□□□□□ -2.15
HMGB1-201ENST00000326004 PCDH15Q96QU1 1955 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 EPPK1P58107 5090 aaKnown RBP1.62□□□□□ -2.15
HMGB1-201ENST00000326004 IGKV1OR2-108A0A075B7D4 117 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 IGHV3OR15-7A0A075B7D8 119 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 MEIKINA0A087WXM9 373 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 A0A087X0T9 212 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 CLDN24A6NM45 220 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 MFSD11O43934 449 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 TPST1O60507 370 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 DEDDO75618 318 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 KRTAP5-8O75690 187 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 TNFSF15O95150 251 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 GPR75O95800 540 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 MT-CO2P00403 227 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 IGKV1D-33P01593 117 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 IGKV1-33P01594 117 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 OR10J4P0C629 311 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 TSPAN19P0C672 248 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 INAFM2P0DMQ5 153 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 SCGB1A1P11684 91 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 FABP4P15090 132 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 UCHL3P15374 230 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 CDK2P24941 298 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 BRS3P32247 399 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 GABRA3P34903 492 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 CTBP2P56545 445 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 OR4D2P58180 307 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 TAS2R41P59536 307 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 AKR1C1Q04828 323 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 PDGFRLQ15198 375 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 TSNQ15631 228 aaKnown RBP1.62□□□□□ -2.15
HMGB1-201ENST00000326004 MAPK14Q16539 360 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 ARHGAP11BQ3KRB8 267 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 KHDC3LQ587J8 217 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 SPIN3Q5JUX0 258 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 LDLRAD2Q5SZI1 272 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 ZNF705AQ6ZN79 300 aaPredicted RBP1.62□□□□□ -2.15
HMGB1-201ENST00000326004 ADM2Q7Z4H4 148 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 GLT6D1Q7Z4J2 308 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 HIST3H2BBQ8N257 126 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 TMEM86BQ8N661 226 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 OR4S1Q8NGB4 309 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 OR11G2Q8NGC1 345 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 OR51D1Q8NGF3 324 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 PPTC7Q8NI37 304 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 Q8WTZ3 238 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 PYURFQ96I23 114 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 ABHD14BQ96IU4 210 aa1.62□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms