RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 LOC102723971A0A1B0GUV8 181 aa7.83□□□□□ -1.16
HMGB3-201ENST00000325307 NECAP1Q8NC96 275 aa7.83□□□□□ -1.16
HMGB3-201ENST00000325307 C21orf62Q9NYP8 219 aa7.83□□□□□ -1.16
HMGB3-201ENST00000325307 FN1P02751 2386 aaKnown RBP7.83□□□□□ -1.16
HMGB3-201ENST00000325307 IGKV1OR2-108A0A075B7D4 117 aa7.83□□□□□ -1.16
HMGB3-201ENST00000325307 KIR2DL5BA0A0G2JN68 375 aa7.83□□□□□ -1.16
HMGB3-201ENST00000325307 KIR2DL5BA0A0G2JPC4 375 aa7.83□□□□□ -1.16
HMGB3-201ENST00000325307 ZNF320A2RRD8 509 aa7.83□□□□□ -1.16
HMGB3-201ENST00000325307 CLDN34H7C241 214 aa7.83□□□□□ -1.16
HMGB3-201ENST00000325307 FABP4P15090 132 aa7.83□□□□□ -1.16
HMGB3-201ENST00000325307 MFAP4P55083 255 aa7.83□□□□□ -1.16
HMGB3-201ENST00000325307 FFAR4Q5NUL3 377 aa7.83□□□□□ -1.16
HMGB3-201ENST00000325307 MIC13Q5XKP0 118 aa7.83□□□□□ -1.16
HMGB3-201ENST00000325307 KIR2DL5AQ8N109 375 aa7.83□□□□□ -1.16
HMGB3-201ENST00000325307 GGTLC1Q9BX51 225 aa7.83□□□□□ -1.16
HMGB3-201ENST00000325307 LSM4Q9Y4Z0 139 aaKnown RBP7.83□□□□□ -1.16
HMGB3-201ENST00000325307 TRBV24-1A0A075B6N3 115 aa7.82□□□□□ -1.16
HMGB3-201ENST00000325307 B4DEV8 164 aa7.82□□□□□ -1.16
HMGB3-201ENST00000325307 GNG7O60262 68 aa7.82□□□□□ -1.16
HMGB3-201ENST00000325307 CRLF1O75462 422 aa7.82□□□□□ -1.16
HMGB3-201ENST00000325307 TRGC2P03986 189 aa7.82□□□□□ -1.16
HMGB3-201ENST00000325307 RNASE1P07998 156 aaKnown RBP7.82□□□□□ -1.16
HMGB3-201ENST00000325307 SLC35B1P78383 322 aa7.82□□□□□ -1.16
HMGB3-201ENST00000325307 ATP5G2Q06055 141 aa7.82□□□□□ -1.16
HMGB3-201ENST00000325307 C19orf54Q5BKX5 351 aa7.82□□□□□ -1.16
HMGB3-201ENST00000325307 LCNL1Q6ZST4 164 aa7.82□□□□□ -1.16
HMGB3-201ENST00000325307 CYB561D1Q8N8Q1 229 aa7.82□□□□□ -1.16
HMGB3-201ENST00000325307 TMEM116Q8NCL8 245 aa7.82□□□□□ -1.16
HMGB3-201ENST00000325307 KCNIP2Q9NS61 270 aa7.82□□□□□ -1.16
HMGB3-201ENST00000325307 NSD1Q96L73 2696 aaPredicted RBP7.82□□□□□ -1.16
HMGB3-201ENST00000325307 H3BQ15 152 aa7.82□□□□□ -1.16
HMGB3-201ENST00000325307 AMBPP02760 352 aa7.82□□□□□ -1.16
HMGB3-201ENST00000325307 PPIFP30405 207 aaKnown RBP7.82□□□□□ -1.16
HMGB3-201ENST00000325307 LCN15Q6UWW0 184 aa7.82□□□□□ -1.16
HMGB3-201ENST00000325307 OR4X1Q8NH49 305 aa7.82□□□□□ -1.16
HMGB3-201ENST00000325307 ALKBH7Q9BT30 221 aaPredicted RBP7.82□□□□□ -1.16
HMGB3-201ENST00000325307 PXMP4Q9Y6I8 212 aa7.82□□□□□ -1.16
HMGB3-201ENST00000325307 TGIF2-C20orf24A0A0A6YYL0 155 aa7.82□□□□□ -1.16
HMGB3-201ENST00000325307 PSMB11A5LHX3 300 aa7.82□□□□□ -1.16
HMGB3-201ENST00000325307 GATA2P23769 480 aaPredicted RBP7.82□□□□□ -1.16
HMGB3-201ENST00000325307 ZNF343Q6P1L6 599 aa7.82□□□□□ -1.16
HMGB3-201ENST00000325307 HSPB1P04792 205 aaKnown RBP7.81□□□□□ -1.16
HMGB3-201ENST00000325307 ZNF90Q03938 601 aa7.81□□□□□ -1.16
HMGB3-201ENST00000325307 FAM90A2PQ658T7 463 aa7.81□□□□□ -1.16
HMGB3-201ENST00000325307 C10orf99Q6UWK7 81 aa7.81□□□□□ -1.16
HMGB3-201ENST00000325307 Q6ZSV7 163 aa7.81□□□□□ -1.16
HMGB3-201ENST00000325307 STPG3Q8N7X2 389 aa7.81□□□□□ -1.16
HMGB3-201ENST00000325307 ELOVL1Q9BW60 279 aa7.81□□□□□ -1.16
HMGB3-201ENST00000325307 KLK15Q9H2R5 256 aa7.81□□□□□ -1.16
HMGB3-201ENST00000325307 GNG13Q9P2W3 67 aa7.81□□□□□ -1.16
HMGB3-201ENST00000325307 TRBV9A0A0B4J1U6 114 aa7.81□□□□□ -1.16
HMGB3-201ENST00000325307 OR2T8A6NH00 312 aa7.81□□□□□ -1.16
HMGB3-201ENST00000325307 FAM223BA6NKX1 122 aa7.81□□□□□ -1.16
HMGB3-201ENST00000325307 SCGB2A1O75556 95 aa7.81□□□□□ -1.16
HMGB3-201ENST00000325307 CYP2G1PQ6ZSU1 146 aa7.81□□□□□ -1.16
HMGB3-201ENST00000325307 FAM223AQ8IWN6 122 aa7.81□□□□□ -1.16
HMGB3-201ENST00000325307 EEF1AKMT3Q96AZ1 226 aa7.81□□□□□ -1.16
HMGB3-201ENST00000325307 PYGO2Q9BRQ0 406 aa7.81□□□□□ -1.16
HMGB3-201ENST00000325307 HMGB3O15347 200 aaKnown RBP7.81□□□□□ -1.16
HMGB3-201ENST00000325307 IGHV3-11P01762 117 aa7.81□□□□□ -1.16
HMGB3-201ENST00000325307 TIGITQ495A1 244 aa7.81□□□□□ -1.16
HMGB3-201ENST00000325307 GCSAMLQ5JQS6 135 aa7.81□□□□□ -1.16
HMGB3-201ENST00000325307 SOHLH1Q5JUK2 328 aa7.81□□□□□ -1.16
HMGB3-201ENST00000325307 VN1R17PQ8TDU5 208 aa7.81□□□□□ -1.16
HMGB3-201ENST00000325307 VPS25Q9BRG1 176 aa7.81□□□□□ -1.16
HMGB3-201ENST00000325307 SLC25A22Q9H936 323 aa7.81□□□□□ -1.16
HMGB3-201ENST00000325307 GNB4Q9HAV0 340 aa7.81□□□□□ -1.16
HMGB3-201ENST00000325307 SLC39A9Q9NUM3 307 aa7.81□□□□□ -1.16
HMGB3-201ENST00000325307 TCRBV4S1A1TA0A5B7 111 aa7.8□□□□□ -1.16
HMGB3-201ENST00000325307 MAP1LC3B2A6NCE7 125 aa7.8□□□□□ -1.16
HMGB3-201ENST00000325307 ZNF727A8MUV8 499 aa7.8□□□□□ -1.16
HMGB3-201ENST00000325307 H3BUA1 57 aa7.8□□□□□ -1.16
HMGB3-201ENST00000325307 HBE1P02100 147 aa7.8□□□□□ -1.16
HMGB3-201ENST00000325307 BCL2P10415 239 aa7.8□□□□□ -1.16
HMGB3-201ENST00000325307 GPR183P32249 361 aa7.8□□□□□ -1.16
HMGB3-201ENST00000325307 SRSF2Q01130 221 aaKnown RBP7.8□□□□□ -1.16
HMGB3-201ENST00000325307 ACOT6Q3I5F7 207 aaPredicted RBP7.8□□□□□ -1.16
HMGB3-201ENST00000325307 TEX38Q6PEX7 206 aa7.8□□□□□ -1.16
HMGB3-201ENST00000325307 CLEC19AQ6UXS0 136 aa7.8□□□□□ -1.16
HMGB3-201ENST00000325307 THAP8Q8NA92 274 aa7.8□□□□□ -1.16
HMGB3-201ENST00000325307 MAP1LC3BQ9GZQ8 125 aa7.8□□□□□ -1.16
HMGB3-201ENST00000325307 SLC45A2Q9UMX9 530 aa7.8□□□□□ -1.16
HMGB3-201ENST00000325307 IGKV1D-37A0A075B6S9 117 aa7.8□□□□□ -1.16
HMGB3-201ENST00000325307 PGPEP1LA6NFU8 196 aa7.8□□□□□ -1.16
HMGB3-201ENST00000325307 RAB9AP51151 201 aa7.8□□□□□ -1.16
HMGB3-201ENST00000325307 ERVFC1-1P60608 527 aa7.8□□□□□ -1.16
HMGB3-201ENST00000325307 Q8N2B8 174 aa7.8□□□□□ -1.16
HMGB3-201ENST00000325307 GATAD1Q8WUU5 269 aa7.8□□□□□ -1.16
HMGB3-201ENST00000325307 SMIM12Q96EX1 92 aa7.8□□□□□ -1.16
HMGB3-201ENST00000325307 TRGV9Q99603 122 aa7.8□□□□□ -1.16
HMGB3-201ENST00000325307 SERTAD4Q9NUC0 356 aa7.8□□□□□ -1.16
HMGB3-201ENST00000325307 ZNF580Q9UK33 172 aa7.8□□□□□ -1.16
HMGB3-201ENST00000325307 IGLV1-40P01703 118 aa7.8□□□□□ -1.16
HMGB3-201ENST00000325307 IGHG4P01861 327 aa7.8□□□□□ -1.16
HMGB3-201ENST00000325307 CLEC3BP05452 202 aa7.8□□□□□ -1.16
HMGB3-201ENST00000325307 LINC00869P0C866 280 aa7.8□□□□□ -1.16
HMGB3-201ENST00000325307 IGLC1P0CG04 106 aa7.8□□□□□ -1.16
HMGB3-201ENST00000325307 RPL29P47914 159 aaKnown RBP7.8□□□□□ -1.16
HMGB3-201ENST00000325307 RPL19P84098 196 aaKnown RBP7.8□□□□□ -1.16
HMGB3-201ENST00000325307 CFHR3Q02985 330 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms