RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 CD55P08174 381 aa8.18□□□□□ -1.1
COL6A3-201ENST00000295550 NCR2O95944 276 aa8.18□□□□□ -1.1
COL6A3-201ENST00000295550 PYYP10082 97 aa8.18□□□□□ -1.1
COL6A3-201ENST00000295550 LCN12Q6JVE5 192 aa8.18□□□□□ -1.1
COL6A3-201ENST00000295550 NUP210LQ5VU65 1888 aa8.18□□□□□ -1.1
COL6A3-201ENST00000295550 MPV17L2Q567V2 206 aa8.18□□□□□ -1.1
COL6A3-201ENST00000295550 IGKV1D-8A0A087WSZ0 117 aa8.18□□□□□ -1.1
COL6A3-201ENST00000295550 COLCA2A8K830 154 aa8.18□□□□□ -1.1
COL6A3-201ENST00000295550 H3BMM0 161 aa8.18□□□□□ -1.1
COL6A3-201ENST00000295550 OR13A1Q8NGR1 328 aa8.18□□□□□ -1.1
COL6A3-201ENST00000295550 UBE2WQ96B02 151 aa8.18□□□□□ -1.1
COL6A3-201ENST00000295550 CD33P20138 364 aa8.18□□□□□ -1.1
COL6A3-201ENST00000295550 LHX2P50458 406 aa8.18□□□□□ -1.1
COL6A3-201ENST00000295550 PVRIGQ6DKI7 326 aa8.18□□□□□ -1.1
COL6A3-201ENST00000295550 ZNF319Q9P2F9 582 aa8.18□□□□□ -1.1
COL6A3-201ENST00000295550 IGKV1D-13A0A0B4J2D9 117 aa8.17□□□□□ -1.1
COL6A3-201ENST00000295550 B9A039 149 aa8.17□□□□□ -1.1
COL6A3-201ENST00000295550 IGKV1-13P0DP09 117 aa8.17□□□□□ -1.1
COL6A3-201ENST00000295550 ADARB2-AS1A8MUL3 147 aa8.17□□□□□ -1.1
COL6A3-201ENST00000295550 PDLIM4P50479 330 aa8.17□□□□□ -1.1
COL6A3-201ENST00000295550 VGLL1Q99990 258 aa8.17□□□□□ -1.1
COL6A3-201ENST00000295550 SYS1-DBNDD2H3BUS1 97 aa8.17□□□□□ -1.1
COL6A3-201ENST00000295550 IFITM1P13164 125 aa8.17□□□□□ -1.1
COL6A3-201ENST00000295550 CHCHD5Q9BSY4 110 aa8.17□□□□□ -1.1
COL6A3-201ENST00000295550 TTC28Q96AY4 2481 aa8.17□□□□□ -1.1
COL6A3-201ENST00000295550 IQCF6A8MYZ5 107 aa8.17□□□□□ -1.1
COL6A3-201ENST00000295550 MLNRO43193 412 aa8.17□□□□□ -1.1
COL6A3-201ENST00000295550 CELA3AP09093 270 aa8.17□□□□□ -1.1
COL6A3-201ENST00000295550 EFNB3Q15768 340 aa8.17□□□□□ -1.1
COL6A3-201ENST00000295550 LCNL1Q6ZST4 164 aa8.17□□□□□ -1.1
COL6A3-201ENST00000295550 C17orf82Q86X59 251 aaPredicted RBP8.17□□□□□ -1.1
COL6A3-201ENST00000295550 ZNF625Q96I27 306 aaPredicted RBP8.17□□□□□ -1.1
COL6A3-201ENST00000295550 TRACP01848 142 aa8.17□□□□□ -1.1
COL6A3-201ENST00000295550 MYOD1P15172 320 aa8.17□□□□□ -1.1
COL6A3-201ENST00000295550 TMEM144Q7Z5S9 345 aa8.17□□□□□ -1.1
COL6A3-201ENST00000295550 TRGV4A0A0C4DH28 118 aa8.17□□□□□ -1.1
COL6A3-201ENST00000295550 DPH3P1Q9H4G8 78 aa8.17□□□□□ -1.1
COL6A3-201ENST00000295550 DNAJC30Q96LL9 226 aa8.16□□□□□ -1.1
COL6A3-201ENST00000295550 WBP1Q96G27 269 aa8.16□□□□□ -1.1
COL6A3-201ENST00000295550 C9JAW5 83 aa8.16□□□□□ -1.1
COL6A3-201ENST00000295550 DTX1Q86Y01 620 aa8.16□□□□□ -1.1
COL6A3-201ENST00000295550 TMEM190Q8WZ59 177 aa8.16□□□□□ -1.1
COL6A3-201ENST00000295550 NOTCH2Q04721 2471 aa8.16□□□□□ -1.1
COL6A3-201ENST00000295550 INS-IGF2F8WCM5 200 aa8.16□□□□□ -1.1
COL6A3-201ENST00000295550 INSP01308 110 aa8.16□□□□□ -1.1
COL6A3-201ENST00000295550 ABHD17AQ96GS6 310 aa8.16□□□□□ -1.1
COL6A3-201ENST00000295550 IGKV1-27A0A075B6S5 117 aa8.16□□□□□ -1.1
COL6A3-201ENST00000295550 FOXH1O75593 365 aa8.16□□□□□ -1.1
COL6A3-201ENST00000295550 DTX2Q86UW9 622 aa8.16□□□□□ -1.1
COL6A3-201ENST00000295550 ZFYVE26Q68DK2 2539 aa8.16□□□□□ -1.1
COL6A3-201ENST00000295550 ID3Q02535 119 aa8.16□□□□□ -1.1
COL6A3-201ENST00000295550 RSPO4Q2I0M5 234 aaPredicted RBP8.16□□□□□ -1.1
COL6A3-201ENST00000295550 TEX43Q6ZNM6 134 aa8.16□□□□□ -1.1
COL6A3-201ENST00000295550 TRBV24-1A0A075B6N3 115 aa8.16□□□□□ -1.1
COL6A3-201ENST00000295550 LINC01549A6NIU2 74 aa8.16□□□□□ -1.1
COL6A3-201ENST00000295550 NBR2O15453 112 aa8.16□□□□□ -1.1
COL6A3-201ENST00000295550 RPRMLQ8N4K4 120 aa8.16□□□□□ -1.1
COL6A3-201ENST00000295550 STHQ8IWL8 128 aa8.15□□□□□ -1.1
COL6A3-201ENST00000295550 CHAC1Q9BUX1 264 aa8.15□□□□□ -1.1
COL6A3-201ENST00000295550 RPL32P62910 135 aaKnown RBP8.15□□□□□ -1.1
COL6A3-201ENST00000295550 DPM3Q9P2X0 92 aa8.15□□□□□ -1.1
COL6A3-201ENST00000295550 INAFM2P0DMQ5 153 aa8.15□□□□□ -1.1
COL6A3-201ENST00000295550 ZNF415Q09FC8 603 aa8.15□□□□□ -1.1
COL6A3-201ENST00000295550 TIMM21Q9BVV7 248 aa8.15□□□□□ -1.1
COL6A3-201ENST00000295550 TLN2Q9Y4G6 2542 aa8.15□□□□□ -1.1
COL6A3-201ENST00000295550 A0A1W2PRX2 142 aa8.15□□□□□ -1.1
COL6A3-201ENST00000295550 PPIFP30405 207 aaKnown RBP8.15□□□□□ -1.1
COL6A3-201ENST00000295550 EFNA2O43921 213 aa8.15□□□□□ -1.1
COL6A3-201ENST00000295550 BSPH1Q075Z2 132 aa8.15□□□□□ -1.1
COL6A3-201ENST00000295550 LSM4Q9Y4Z0 139 aaKnown RBP8.15□□□□□ -1.1
COL6A3-201ENST00000295550 IGHV2OR16-5A0A0B4J2B6 119 aa8.15□□□□□ -1.11
COL6A3-201ENST00000295550 SIGLEC15Q6ZMC9 328 aa8.15□□□□□ -1.11
COL6A3-201ENST00000295550 Q6ZS49 121 aa8.15□□□□□ -1.11
COL6A3-201ENST00000295550 PPDPFLQ8WWR9 84 aa8.15□□□□□ -1.11
COL6A3-201ENST00000295550 PEMTQ9UBM1 199 aa8.15□□□□□ -1.11
COL6A3-201ENST00000295550 LINC00312Q9Y6C7 94 aa8.15□□□□□ -1.11
COL6A3-201ENST00000295550 ZIC4Q8N9L1 334 aa8.15□□□□□ -1.11
COL6A3-201ENST00000295550 SIGLEC12Q96PQ1 595 aa8.15□□□□□ -1.11
COL6A3-201ENST00000295550 IGHV3-11P01762 117 aa8.14□□□□□ -1.11
COL6A3-201ENST00000295550 SLC25A39Q9BZJ4 359 aaPredicted RBP8.14□□□□□ -1.11
COL6A3-201ENST00000295550 PSG8Q9UQ74 426 aa8.14□□□□□ -1.11
COL6A3-201ENST00000295550 IGKV2-40A0A087WW87 121 aaPredicted RBP8.14□□□□□ -1.11
COL6A3-201ENST00000295550 IGKV2D-40P01614 121 aaPredicted RBP8.14□□□□□ -1.11
COL6A3-201ENST00000295550 RBMY1FQ15415 496 aaKnown RBP8.14□□□□□ -1.11
COL6A3-201ENST00000295550 GGNQ86UU5 652 aa8.14□□□□□ -1.11
COL6A3-201ENST00000295550 CECR9P0C854 216 aa8.14□□□□□ -1.11
COL6A3-201ENST00000295550 ERCC8Q13216 396 aa8.14□□□□□ -1.11
COL6A3-201ENST00000295550 IGHV3-73A0A0B4J1V6 119 aa8.14□□□□□ -1.11
COL6A3-201ENST00000295550 CFHR1Q03591 330 aa8.14□□□□□ -1.11
COL6A3-201ENST00000295550 STPG1Q5TH74 334 aa8.14□□□□□ -1.11
COL6A3-201ENST00000295550 TMEM256Q8N2U0 113 aa8.14□□□□□ -1.11
COL6A3-201ENST00000295550 SPAARA0A1B0GVQ0 90 aa8.14□□□□□ -1.11
COL6A3-201ENST00000295550 PRR31Q5SQ13 230 aa8.14□□□□□ -1.11
COL6A3-201ENST00000295550 NUP35Q8NFH5 326 aa8.14□□□□□ -1.11
COL6A3-201ENST00000295550 VDAC2P45880 294 aaPredicted RBP8.14□□□□□ -1.11
COL6A3-201ENST00000295550 ANAPC10Q9UM13 185 aa8.14□□□□□ -1.11
COL6A3-201ENST00000295550 HIVEP3Q5T1R4 2406 aa8.13□□□□□ -1.11
COL6A3-201ENST00000295550 SCRT1Q9BWW7 348 aa8.13□□□□□ -1.11
COL6A3-201ENST00000295550 CELA3BP08861 270 aa8.13□□□□□ -1.11
COL6A3-201ENST00000295550 FXYD7P58549 80 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms