RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 MYCNOSP40205 109 aa13.25□□□□□ -0.29
CPSF4-201ENST00000292476 SSBP2P81877 361 aaPredicted RBP13.25□□□□□ -0.29
CPSF4-201ENST00000292476 CYB5R2Q6BCY4 276 aa13.25□□□□□ -0.29
CPSF4-201ENST00000292476 TMEM256Q8N2U0 113 aa13.25□□□□□ -0.29
CPSF4-201ENST00000292476 TNCP24821 2201 aa13.25□□□□□ -0.29
CPSF4-201ENST00000292476 TRAV5A0A0B4J249 113 aa13.24□□□□□ -0.29
CPSF4-201ENST00000292476 A8MWP6 167 aa13.24□□□□□ -0.29
CPSF4-201ENST00000292476 SNURFLB1AK76 121 aa13.24□□□□□ -0.29
CPSF4-201ENST00000292476 TEX22C9J3V5 150 aa13.24□□□□□ -0.29
CPSF4-201ENST00000292476 HLA-DQA1P01909 254 aa13.24□□□□□ -0.29
CPSF4-201ENST00000292476 IGHV4-38-2P0DP08 117 aa13.24□□□□□ -0.29
CPSF4-201ENST00000292476 IER3P46695 156 aa13.24□□□□□ -0.29
CPSF4-201ENST00000292476 RUSC1-AS1Q66K80 236 aa13.24□□□□□ -0.29
CPSF4-201ENST00000292476 ZNF664Q8N3J9 261 aa13.24□□□□□ -0.29
CPSF4-201ENST00000292476 MS4A10Q96PG2 267 aa13.24□□□□□ -0.29
CPSF4-201ENST00000292476 TNFRSF19Q9NS68 423 aa13.24□□□□□ -0.29
CPSF4-201ENST00000292476 HLA-DRB1P01911 266 aa13.24□□□□□ -0.29
CPSF4-201ENST00000292476 AMY1AP04745 511 aa13.24□□□□□ -0.29
CPSF4-201ENST00000292476 OR10J3Q5JRS4 329 aa13.24□□□□□ -0.29
CPSF4-201ENST00000292476 BRD3OSQ6XYD6 125 aa13.24□□□□□ -0.29
CPSF4-201ENST00000292476 WIPF2Q8TF74 440 aaPredicted RBP13.24□□□□□ -0.29
CPSF4-201ENST00000292476 RNASE7Q9H1E1 156 aaKnown RBP13.24□□□□□ -0.29
CPSF4-201ENST00000292476 PRO1933Q9H354 126 aa13.24□□□□□ -0.29
CPSF4-201ENST00000292476 F11RQ9Y624 299 aaKnown RBP13.24□□□□□ -0.29
CPSF4-201ENST00000292476 TLN2Q9Y4G6 2542 aa13.23□□□□□ -0.29
CPSF4-201ENST00000292476 IGHV3OR16-10A0A075B7F0 116 aa13.23□□□□□ -0.29
CPSF4-201ENST00000292476 IZUMO1RA6ND01 250 aa13.23□□□□□ -0.29
CPSF4-201ENST00000292476 ZNF705GA8MUZ8 300 aaPredicted RBP13.23□□□□□ -0.29
CPSF4-201ENST00000292476 FAM120AOSQ5T036 256 aa13.23□□□□□ -0.29
CPSF4-201ENST00000292476 TMEM136Q6ZRR5 245 aa13.23□□□□□ -0.29
CPSF4-201ENST00000292476 LINC00305Q7Z4B0 112 aa13.23□□□□□ -0.29
CPSF4-201ENST00000292476 Q8N9W7 124 aa13.23□□□□□ -0.29
CPSF4-201ENST00000292476 ARPC1AQ92747 370 aa13.23□□□□□ -0.29
CPSF4-201ENST00000292476 NDUFAF3Q9BU61 184 aa13.23□□□□□ -0.29
CPSF4-201ENST00000292476 MRPL36Q9P0J6 103 aaKnown RBP13.23□□□□□ -0.29
CPSF4-201ENST00000292476 TP53TG3Q9ULZ0 132 aa13.23□□□□□ -0.29
CPSF4-201ENST00000292476 ABCA1O95477 2261 aa13.22□□□□□ -0.29
CPSF4-201ENST00000292476 PYYP10082 97 aa13.22□□□□□ -0.29
CPSF4-201ENST00000292476 MGST1P10620 155 aaKnown RBP13.22□□□□□ -0.29
CPSF4-201ENST00000292476 KRTAP1-1Q07627 177 aa13.22□□□□□ -0.29
CPSF4-201ENST00000292476 TMEM183BQ1AE95 376 aa13.22□□□□□ -0.29
CPSF4-201ENST00000292476 TMEM68Q96MH6 324 aa13.22□□□□□ -0.29
CPSF4-201ENST00000292476 RBM14Q96PK6 669 aaKnown RBP13.22□□□□□ -0.29
CPSF4-201ENST00000292476 NAGKQ9UJ70 344 aa13.22□□□□□ -0.29
CPSF4-201ENST00000292476 ABCA2Q9BZC7 2435 aa13.22□□□□□ -0.29
CPSF4-201ENST00000292476 M0QZK8 103 aa13.21□□□□□ -0.29
CPSF4-201ENST00000292476 HYPMO75409 117 aa13.21□□□□□ -0.29
CPSF4-201ENST00000292476 KLF17Q5JT82 389 aaPredicted RBP13.21□□□□□ -0.29
CPSF4-201ENST00000292476 MISP3Q96FF7 219 aa13.21□□□□□ -0.29
CPSF4-201ENST00000292476 NAT8BQ9UHF3 227 aa13.21□□□□□ -0.29
CPSF4-201ENST00000292476 MOB4Q9Y3A3 225 aa13.21□□□□□ -0.29
CPSF4-201ENST00000292476 KLF12Q9Y4X4 402 aa13.21□□□□□ -0.29
CPSF4-201ENST00000292476 GRIFINA4D1Z8 144 aa13.21□□□□□ -0.3
CPSF4-201ENST00000292476 NPIPB5A8MRT5 1133 aa13.21□□□□□ -0.3
CPSF4-201ENST00000292476 NUPR1O60356 82 aa13.21□□□□□ -0.3
CPSF4-201ENST00000292476 REG1AP05451 166 aa13.21□□□□□ -0.3
CPSF4-201ENST00000292476 MFAP2P55001 183 aa13.21□□□□□ -0.3
CPSF4-201ENST00000292476 LINC00310P59036 64 aa13.21□□□□□ -0.3
CPSF4-201ENST00000292476 BAGE2Q86Y30 109 aa13.21□□□□□ -0.3
CPSF4-201ENST00000292476 GRAMD2BQ96HH9 432 aa13.21□□□□□ -0.3
CPSF4-201ENST00000292476 KIR2DL5BA0A0G2JN68 375 aa13.2□□□□□ -0.3
CPSF4-201ENST00000292476 KIR2DL5BA0A0G2JPC4 375 aa13.2□□□□□ -0.3
CPSF4-201ENST00000292476 SERF1AO75920 110 aa13.2□□□□□ -0.3
CPSF4-201ENST00000292476 C1orf194Q5T5A4 169 aa13.2□□□□□ -0.3
CPSF4-201ENST00000292476 BAGE3Q86Y29 109 aa13.2□□□□□ -0.3
CPSF4-201ENST00000292476 KIR2DL5AQ8N109 375 aa13.2□□□□□ -0.3
CPSF4-201ENST00000292476 THYN1Q9P016 225 aa13.2□□□□□ -0.3
CPSF4-201ENST00000292476 EPDR1Q9UM22 224 aa13.2□□□□□ -0.3
CPSF4-201ENST00000292476 A0A1B0GUS0 222 aa13.19□□□□□ -0.3
CPSF4-201ENST00000292476 SCGB1D1O95968 90 aa13.19□□□□□ -0.3
CPSF4-201ENST00000292476 AVPP01185 164 aa13.19□□□□□ -0.3
CPSF4-201ENST00000292476 HIST1H1EP10412 219 aaKnown RBP13.19□□□□□ -0.3
CPSF4-201ENST00000292476 TTC9CQ8N5M4 171 aa13.19□□□□□ -0.3
CPSF4-201ENST00000292476 WNT10AQ9GZT5 417 aa13.19□□□□□ -0.3
CPSF4-201ENST00000292476 IGHV7-81A0A0B4J1V7 117 aa13.18□□□□□ -0.3
CPSF4-201ENST00000292476 GP9P14770 177 aa13.18□□□□□ -0.3
CPSF4-201ENST00000292476 USF2Q15853 346 aaPredicted RBP13.18□□□□□ -0.3
CPSF4-201ENST00000292476 C9orf139Q6ZV77 190 aa13.18□□□□□ -0.3
CPSF4-201ENST00000292476 C5orf17Q8NAS9 161 aa13.18□□□□□ -0.3
CPSF4-201ENST00000292476 OR1B1Q8NGR6 318 aa13.18□□□□□ -0.3
CPSF4-201ENST00000292476 FMC1Q96HJ9 113 aa13.18□□□□□ -0.3
CPSF4-201ENST00000292476 TMEM14CQ9P0S9 112 aa13.18□□□□□ -0.3
CPSF4-201ENST00000292476 NBEAP1P0C6P0 100 aa13.18□□□□□ -0.3
CPSF4-201ENST00000292476 ORM2P19652 201 aa13.18□□□□□ -0.3
CPSF4-201ENST00000292476 UBE2G1P62253 170 aa13.18□□□□□ -0.3
CPSF4-201ENST00000292476 CT83Q5H943 113 aa13.18□□□□□ -0.3
CPSF4-201ENST00000292476 ATP5L2Q7Z4Y8 100 aa13.18□□□□□ -0.3
CPSF4-201ENST00000292476 LINC00469Q8N7U9 141 aa13.18□□□□□ -0.3
CPSF4-201ENST00000292476 C5orf56Q8N8D9 126 aa13.18□□□□□ -0.3
CPSF4-201ENST00000292476 PIFOQ8TCI5 191 aa13.18□□□□□ -0.3
CPSF4-201ENST00000292476 ATG101Q9BSB4 218 aa13.18□□□□□ -0.3
CPSF4-201ENST00000292476 C2orf88Q9BSF0 95 aa13.18□□□□□ -0.3
CPSF4-201ENST00000292476 ZNF331Q9NQX6 463 aaPredicted RBP13.18□□□□□ -0.3
CPSF4-201ENST00000292476 SERTAD4Q9NUC0 356 aa13.18□□□□□ -0.3
CPSF4-201ENST00000292476 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.17□□□□□ -0.36e-9■■■■□ 22.8
CPSF4-201ENST00000292476 ZFHX3Q15911 3703 aa13.17□□□□□ -0.3
CPSF4-201ENST00000292476 CD5LO43866 347 aa13.17□□□□□ -0.3
CPSF4-201ENST00000292476 SLC25A5P05141 298 aaKnown RBP13.17□□□□□ -0.3
CPSF4-201ENST00000292476 FBLN7Q53RD9 439 aa13.17□□□□□ -0.3
CPSF4-201ENST00000292476 GPR82Q96P67 336 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 144.5 ms