RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 TMEM14EPQ6UXP3 125 aa9.35□□□□□ -0.91
USP53-201ENST00000274030 Q6ZRM9 215 aa9.35□□□□□ -0.91
USP53-201ENST00000274030 RPRMLQ8N4K4 120 aa9.35□□□□□ -0.91
USP53-201ENST00000274030 HOXA3O43365 443 aaPredicted RBP9.35□□□□□ -0.91
USP53-201ENST00000274030 SLC25A20O43772 301 aa9.35□□□□□ -0.91
USP53-201ENST00000274030 NDUFAF3Q9BU61 184 aa9.35□□□□□ -0.91
USP53-201ENST00000274030 MCRIP2Q9BUT9 160 aaKnown RBP9.35□□□□□ -0.91
USP53-201ENST00000274030 DPH3P1Q9H4G8 78 aa9.35□□□□□ -0.91
USP53-201ENST00000274030 ANK1P16157 1881 aa9.35□□□□□ -0.91
USP53-201ENST00000274030 UNQ6494/PRO21346Q6UXR6 183 aa9.35□□□□□ -0.91
USP53-201ENST00000274030 WDR90Q96KV7 1748 aa9.35□□□□□ -0.91
USP53-201ENST00000274030 PLNP26678 52 aa9.35□□□□□ -0.91
USP53-201ENST00000274030 FAM166AQ6J272 317 aa9.35□□□□□ -0.91
USP53-201ENST00000274030 LCN12Q6JVE5 192 aa9.35□□□□□ -0.91
USP53-201ENST00000274030 TMEM256Q8N2U0 113 aa9.35□□□□□ -0.91
USP53-201ENST00000274030 C14orf178Q8N769 122 aaPredicted RBP9.35□□□□□ -0.91
USP53-201ENST00000274030 LINC00479Q96M42 142 aa9.35□□□□□ -0.91
USP53-201ENST00000274030 VGLL1Q99990 258 aa9.35□□□□□ -0.91
USP53-201ENST00000274030 A6NNC1 897 aa9.35□□□□□ -0.91
USP53-201ENST00000274030 KLHL30-AS1Q8NEE0 82 aa9.35□□□□□ -0.91
USP53-201ENST00000274030 BDP1A6H8Y1 2624 aa9.34□□□□□ -0.91
USP53-201ENST00000274030 MBD3L4A6NDZ8 208 aaPredicted RBP9.34□□□□□ -0.91
USP53-201ENST00000274030 MBD3L3A6NE82 208 aaPredicted RBP9.34□□□□□ -0.91
USP53-201ENST00000274030 MBD3L5A6NJ08 208 aaPredicted RBP9.34□□□□□ -0.91
USP53-201ENST00000274030 COLCA2A8K830 154 aa9.34□□□□□ -0.91
USP53-201ENST00000274030 SMKR1H3BMG3 65 aa9.34□□□□□ -0.91
USP53-201ENST00000274030 AMBPP02760 352 aa9.34□□□□□ -0.91
USP53-201ENST00000274030 LAGE3Q14657 143 aa9.34□□□□□ -0.91
USP53-201ENST00000274030 MBD3L2Q8NHZ7 208 aaPredicted RBP9.34□□□□□ -0.91
USP53-201ENST00000274030 SH2D1AO60880 128 aa9.34□□□□□ -0.91
USP53-201ENST00000274030 QRFPP83859 136 aa9.34□□□□□ -0.91
USP53-201ENST00000274030 TRGV9Q99603 122 aa9.34□□□□□ -0.91
USP53-201ENST00000274030 SAA4P35542 130 aa9.34□□□□□ -0.91
USP53-201ENST00000274030 RUSC1-AS1Q66K80 236 aa9.34□□□□□ -0.91
USP53-201ENST00000274030 C15orf62A8K5M9 175 aa9.33□□□□□ -0.92
USP53-201ENST00000274030 E7EQL1 145 aa9.33□□□□□ -0.92
USP53-201ENST00000274030 MINOS1Q5TGZ0 78 aa9.33□□□□□ -0.92
USP53-201ENST00000274030 HIST3H2BBQ8N257 126 aa9.33□□□□□ -0.92
USP53-201ENST00000274030 MINOS1-NBL1R4GNA1 71 aa9.33□□□□□ -0.92
USP53-201ENST00000274030 Q6ZS92 163 aa9.33□□□□□ -0.92
USP53-201ENST00000274030 ORAOV1Q8WV07 137 aa9.33□□□□□ -0.92
USP53-201ENST00000274030 CHCHD1Q96BP2 118 aaKnown RBP9.33□□□□□ -0.92
USP53-201ENST00000274030 A0A087WWL8 130 aa9.33□□□□□ -0.92
USP53-201ENST00000274030 ERCC8Q13216 396 aa9.33□□□□□ -0.92
USP53-201ENST00000274030 NUP35Q8NFH5 326 aa9.33□□□□□ -0.92
USP53-201ENST00000274030 hDV102S1A0JD36 115 aa9.33□□□□□ -0.92
USP53-201ENST00000274030 TDGF1P3P51864 188 aa9.33□□□□□ -0.92
USP53-201ENST00000274030 COL4A6Q14031 1691 aa9.33□□□□□ -0.92
USP53-201ENST00000274030 TRBV24-1A0A075B6N3 115 aa9.33□□□□□ -0.92
USP53-201ENST00000274030 OVOL3O00110 214 aa9.33□□□□□ -0.92
USP53-201ENST00000274030 PHLDA1Q8WV24 401 aaPredicted RBP9.33□□□□□ -0.92
USP53-201ENST00000274030 DSCR9P59020 149 aa9.32□□□□□ -0.92
USP53-201ENST00000274030 RHPN1-AS1Q9BWJ2 59 aa9.32□□□□□ -0.92
USP53-201ENST00000274030 A0A0G2JMZ2 1700 aa9.32□□□□□ -0.92
USP53-201ENST00000274030 LRRC37A2A6NM11 1700 aa9.32□□□□□ -0.92
USP53-201ENST00000274030 UBE2CO00762 179 aa9.32□□□□□ -0.92
USP53-201ENST00000274030 WISP1O95388 367 aa9.32□□□□□ -0.92
USP53-201ENST00000274030 C1orf159Q96HA4 380 aa9.32□□□□□ -0.92
USP53-201ENST00000274030 SYNJ2BPP57105 145 aa9.32□□□□□ -0.92
USP53-201ENST00000274030 CKS1BP61024 79 aa9.32□□□□□ -0.92
USP53-201ENST00000274030 S100A7L2Q5SY68 101 aa9.32□□□□□ -0.92
USP53-201ENST00000274030 LTBP1Q14766 1721 aa9.32□□□□□ -0.92
USP53-201ENST00000274030 XIRP1Q702N8 1843 aaKnown RBP9.32□□□□□ -0.92
USP53-201ENST00000274030 RNF223E7ERA6 249 aa9.32□□□□□ -0.92
USP53-201ENST00000274030 SPSB3Q6PJ21 355 aa9.32□□□□□ -0.92
USP53-201ENST00000274030 ZNF479Q96JC4 524 aa9.32□□□□□ -0.92
USP53-201ENST00000274030 PRADC1Q9BSG0 188 aa9.32□□□□□ -0.92
USP53-201ENST00000274030 WNK3Q9BYP7 1800 aa9.31□□□□□ -0.92
USP53-201ENST00000274030 TRBV7-1A0A0A6YYK4 115 aa9.31□□□□□ -0.92
USP53-201ENST00000274030 RNASE2P10153 161 aaKnown RBP9.31□□□□□ -0.92
USP53-201ENST00000274030 PAX4O43316 350 aa9.31□□□□□ -0.92
USP53-201ENST00000274030 DEFB130BP0DP73 79 aa9.31□□□□□ -0.92
USP53-201ENST00000274030 DEFB130AP0DP74 79 aa9.31□□□□□ -0.92
USP53-201ENST00000274030 UBE2DNLQ8IWF7 75 aa9.31□□□□□ -0.92
USP53-201ENST00000274030 AMN1Q8IY45 258 aa9.31□□□□□ -0.92
USP53-201ENST00000274030 TMEM86BQ8N661 226 aa9.31□□□□□ -0.92
USP53-201ENST00000274030 GATD1Q8NB37 220 aa9.31□□□□□ -0.92
USP53-201ENST00000274030 CST9LQ9H4G1 147 aa9.31□□□□□ -0.92
USP53-201ENST00000274030 TCF20Q9UGU0 1960 aaKnown RBP9.3□□□□□ -0.92
USP53-201ENST00000274030 TRAV1-1A0A0B4J248 108 aa9.3□□□□□ -0.92
USP53-201ENST00000274030 M0R1W7 72 aa9.3□□□□□ -0.92
USP53-201ENST00000274030 IGHG3P01860 377 aa9.3□□□□□ -0.92
USP53-201ENST00000274030 PSG3Q16557 428 aa9.3□□□□□ -0.92
USP53-201ENST00000274030 RPL36AP83881 106 aaKnown RBP9.3□□□□□ -0.92
USP53-201ENST00000274030 GUSBP1Q15486 140 aa9.3□□□□□ -0.92
USP53-201ENST00000274030 C9orf139Q6ZV77 190 aa9.3□□□□□ -0.92
USP53-201ENST00000274030 RPL36ALQ969Q0 106 aaKnown RBP9.3□□□□□ -0.92
USP53-201ENST00000274030 CSTL1Q9H114 145 aa9.3□□□□□ -0.92
USP53-201ENST00000274030 PLCE1Q9P212 2302 aa9.3□□□□□ -0.92
USP53-201ENST00000274030 TRAV13-1A0A0B4J241 112 aa9.3□□□□□ -0.92
USP53-201ENST00000274030 SRSF4Q08170 494 aaKnown RBP9.3□□□□□ -0.92
USP53-201ENST00000274030 JPT2Q9H910 190 aa9.3□□□□□ -0.92
USP53-201ENST00000274030 TMEM242Q9NWH2 141 aa9.3□□□□□ -0.92
USP53-201ENST00000274030 M0R2P5 195 aa9.3□□□□□ -0.92
USP53-201ENST00000274030 ASCL4Q6XD76 172 aa9.3□□□□□ -0.92
USP53-201ENST00000274030 OR2K2Q8NGT1 345 aa9.3□□□□□ -0.92
USP53-201ENST00000274030 KNCNA6PVL3 124 aa9.3□□□□□ -0.92
USP53-201ENST00000274030 OOSP1A8MZH6 123 aa9.3□□□□□ -0.92
USP53-201ENST00000274030 DUX4L9Q6RFH8 374 aaPredicted RBP9.3□□□□□ -0.92
USP53-201ENST00000274030 RNF5Q99942 180 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms