RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 OR2J3O76001 311 aa12.01□□□□□ -0.49
SF3B4-201ENST00000271628 TAS2R60P59551 318 aa12.01□□□□□ -0.49
SF3B4-201ENST00000271628 Q56UQ5 140 aa12.01□□□□□ -0.49
SF3B4-201ENST00000271628 C1orf194Q5T5A4 169 aa12.01□□□□□ -0.49
SF3B4-201ENST00000271628 MAP1AP78559 2803 aaPredicted RBP12.01□□□□□ -0.49
SF3B4-201ENST00000271628 FBN2P35556 2912 aa12□□□□□ -0.49
SF3B4-201ENST00000271628 A0A096LNT2 108 aa12□□□□□ -0.49
SF3B4-201ENST00000271628 A0A1B0GUS0 222 aa12□□□□□ -0.49
SF3B4-201ENST00000271628 SNURFLB1AK76 121 aa12□□□□□ -0.49
SF3B4-201ENST00000271628 J3QLI3 93 aa12□□□□□ -0.49
SF3B4-201ENST00000271628 NDUFB8O95169 186 aa12□□□□□ -0.49
SF3B4-201ENST00000271628 NBEAP1P0C6P0 100 aa12□□□□□ -0.49
SF3B4-201ENST00000271628 IER3P46695 156 aa12□□□□□ -0.49
SF3B4-201ENST00000271628 LOXL1Q08397 574 aaPredicted RBP12□□□□□ -0.49
SF3B4-201ENST00000271628 ECSCRQ19T08 205 aa12□□□□□ -0.49
SF3B4-201ENST00000271628 OR8I2Q8N0Y5 310 aa12□□□□□ -0.49
SF3B4-201ENST00000271628 ZNF491Q8N8L2 437 aa12□□□□□ -0.49
SF3B4-201ENST00000271628 RNF125Q96EQ8 232 aa12□□□□□ -0.49
SF3B4-201ENST00000271628 FBXL7Q9UJT9 491 aa12□□□□□ -0.49
SF3B4-201ENST00000271628 TP53TG3Q9ULZ0 132 aa12□□□□□ -0.49
SF3B4-201ENST00000271628 COL8A1P27658 744 aa11.99□□□□□ -0.49
SF3B4-201ENST00000271628 DEFB113Q30KQ7 82 aa11.99□□□□□ -0.49
SF3B4-201ENST00000271628 TMEM14CQ9P0S9 112 aa11.99□□□□□ -0.49
SF3B4-201ENST00000271628 RNF24Q9Y225 148 aa11.99□□□□□ -0.49
SF3B4-201ENST00000271628 A0A1B0GV90 55 aa11.99□□□□□ -0.49
SF3B4-201ENST00000271628 WI2-2373I1.2A0A1W2PRP0 233 aa11.99□□□□□ -0.49
SF3B4-201ENST00000271628 IL4P05112 153 aa11.99□□□□□ -0.49
SF3B4-201ENST00000271628 GP9P14770 177 aa11.99□□□□□ -0.49
SF3B4-201ENST00000271628 TMEM219Q86XT9 240 aa11.99□□□□□ -0.49
SF3B4-201ENST00000271628 ANKRD17O75179 2603 aaKnown RBP11.99□□□□□ -0.49
SF3B4-201ENST00000271628 ABCA1O95477 2261 aa11.98□□□□□ -0.49
SF3B4-201ENST00000271628 F8W735 103 aaPredicted RBP11.98□□□□□ -0.49
SF3B4-201ENST00000271628 M0QZK8 103 aa11.98□□□□□ -0.49
SF3B4-201ENST00000271628 BAGE3Q86Y29 109 aa11.98□□□□□ -0.49
SF3B4-201ENST00000271628 BAGE2Q86Y30 109 aa11.98□□□□□ -0.49
SF3B4-201ENST00000271628 IGF2BP2-AS1Q96M15 143 aa11.98□□□□□ -0.49
SF3B4-201ENST00000271628 CDC42EP3Q9UKI2 254 aa11.98□□□□□ -0.49
SF3B4-201ENST00000271628 CELSR1Q9NYQ6 3014 aa11.98□□□□□ -0.49
SF3B4-201ENST00000271628 CSMD2Q7Z408 3487 aa11.98□□□□□ -0.49
SF3B4-201ENST00000271628 KIR2DL5BA0A0G2JN68 375 aa11.98□□□□□ -0.49
SF3B4-201ENST00000271628 KIR2DL5BA0A0G2JPC4 375 aa11.98□□□□□ -0.49
SF3B4-201ENST00000271628 SERF1AO75920 110 aa11.98□□□□□ -0.49
SF3B4-201ENST00000271628 IGLV2-8P01709 118 aa11.98□□□□□ -0.49
SF3B4-201ENST00000271628 CRIP2P52943 208 aaPredicted RBP11.98□□□□□ -0.49
SF3B4-201ENST00000271628 KRTAP10-9P60411 292 aa11.98□□□□□ -0.49
SF3B4-201ENST00000271628 IBA57Q5T440 356 aaKnown RBP11.98□□□□□ -0.49
SF3B4-201ENST00000271628 ZNF329Q86UD4 541 aa11.98□□□□□ -0.49
SF3B4-201ENST00000271628 BPIFA4PQ86YQ2 179 aa11.98□□□□□ -0.49
SF3B4-201ENST00000271628 KIR2DL5AQ8N109 375 aa11.98□□□□□ -0.49
SF3B4-201ENST00000271628 TMEM190Q8WZ59 177 aa11.98□□□□□ -0.49
SF3B4-201ENST00000271628 SHANK2-AS3Q9BTD1 123 aa11.98□□□□□ -0.49
SF3B4-201ENST00000271628 RNASE7Q9H1E1 156 aaKnown RBP11.98□□□□□ -0.49
SF3B4-201ENST00000271628 S4R3C0 116 aa11.98□□□□□ -0.49
SF3B4-201ENST00000271628 SMIM27A0A1W2PRY6 76 aa11.97□□□□□ -0.49
SF3B4-201ENST00000271628 H3BUX3 64 aa11.97□□□□□ -0.49
SF3B4-201ENST00000271628 AVPP01185 164 aa11.97□□□□□ -0.49
SF3B4-201ENST00000271628 S100A7P31151 101 aa11.97□□□□□ -0.49
SF3B4-201ENST00000271628 MYCNOSP40205 109 aa11.97□□□□□ -0.49
SF3B4-201ENST00000271628 LINC00310P59036 64 aa11.97□□□□□ -0.49
SF3B4-201ENST00000271628 BLNKQ8WV28 456 aa11.97□□□□□ -0.49
SF3B4-201ENST00000271628 ZFHX3Q15911 3703 aa11.97□□□□□ -0.49
SF3B4-201ENST00000271628 H3BRN7 92 aa11.96□□□□□ -0.49
SF3B4-201ENST00000271628 TGFAP01135 160 aa11.96□□□□□ -0.49
SF3B4-201ENST00000271628 AMY1AP04745 511 aa11.96□□□□□ -0.49
SF3B4-201ENST00000271628 HIST1H1EP10412 219 aaKnown RBP11.96□□□□□ -0.49
SF3B4-201ENST00000271628 USF2Q15853 346 aaPredicted RBP11.96□□□□□ -0.49
SF3B4-201ENST00000271628 C15orf32Q32M92 178 aa11.96□□□□□ -0.49
SF3B4-201ENST00000271628 OR10J3Q5JRS4 329 aa11.96□□□□□ -0.49
SF3B4-201ENST00000271628 LEMD1Q68G75 181 aa11.96□□□□□ -0.49
SF3B4-201ENST00000271628 NAT8BQ9UHF3 227 aa11.96□□□□□ -0.49
SF3B4-201ENST00000271628 CENPEQ02224 2701 aa11.96□□□□□ -0.49
SF3B4-201ENST00000271628 PGPA6NDG6 321 aa11.96□□□□□ -0.5
SF3B4-201ENST00000271628 A6NDX4 124 aa11.96□□□□□ -0.5
SF3B4-201ENST00000271628 LINC01548A6NM66 108 aa11.96□□□□□ -0.5
SF3B4-201ENST00000271628 ZNF705FA8MVS1 300 aaPredicted RBP11.96□□□□□ -0.5
SF3B4-201ENST00000271628 CTSGP08311 255 aa11.96□□□□□ -0.5
SF3B4-201ENST00000271628 ZNF705DP0CH99 300 aaPredicted RBP11.96□□□□□ -0.5
SF3B4-201ENST00000271628 ZNF705BP0CI00 300 aaPredicted RBP11.96□□□□□ -0.5
SF3B4-201ENST00000271628 RHOGP84095 191 aa11.96□□□□□ -0.5
SF3B4-201ENST00000271628 Q6ZWC4 215 aa11.96□□□□□ -0.5
SF3B4-201ENST00000271628 OR2T8A6NH00 312 aa11.95□□□□□ -0.5
SF3B4-201ENST00000271628 G3V318 75 aa11.95□□□□□ -0.5
SF3B4-201ENST00000271628 PEX7O00628 323 aa11.95□□□□□ -0.5
SF3B4-201ENST00000271628 HLA-DQA1P01909 254 aa11.95□□□□□ -0.5
SF3B4-201ENST00000271628 MGST1P10620 155 aaKnown RBP11.95□□□□□ -0.5
SF3B4-201ENST00000271628 TMEM136Q6ZRR5 245 aa11.95□□□□□ -0.5
SF3B4-201ENST00000271628 SAMD10Q9BYL1 202 aa11.95□□□□□ -0.5
SF3B4-201ENST00000271628 EPDR1Q9UM22 224 aa11.95□□□□□ -0.5
SF3B4-201ENST00000271628 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.95□□□□□ -0.56e-8■■□□□ 14.5
SF3B4-201ENST00000271628 TRAV41A0A0B4J266 112 aa11.95□□□□□ -0.5
SF3B4-201ENST00000271628 SH2D7A6NKC9 451 aaPredicted RBP11.95□□□□□ -0.5
SF3B4-201ENST00000271628 RNF223E7ERA6 249 aa11.95□□□□□ -0.5
SF3B4-201ENST00000271628 IGF1P05019 195 aa11.95□□□□□ -0.5
SF3B4-201ENST00000271628 SNRPCP09234 159 aaKnown RBP11.95□□□□□ -0.5
SF3B4-201ENST00000271628 FRMD6-AS1P0C7T7 363 aa11.95□□□□□ -0.5
SF3B4-201ENST00000271628 RASL11AQ6T310 242 aa11.95□□□□□ -0.5
SF3B4-201ENST00000271628 FAM231DQ6ZW35 169 aa11.95□□□□□ -0.5
SF3B4-201ENST00000271628 OR4F17Q8NGA8 305 aa11.95□□□□□ -0.5
SF3B4-201ENST00000271628 ZNF502Q8TBZ5 544 aa11.95□□□□□ -0.5
SF3B4-201ENST00000271628 TRBV7-1A0A0A6YYK4 115 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 120 ms