RNA–Protein interactions for RNA: ENST00000243082.4

HOXC11-201, Transcript of homeobox C11, humanhuman

TSL 3 BASIC

Gene HOXC11, Length 2,039 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-201ENST00000243082 RNF24Q9Y225 148 aa14.41□□□□□ -0.1
HOXC11-201ENST00000243082 C19orf54Q5BKX5 351 aa14.4□□□□□ -0.1
HOXC11-201ENST00000243082 FAM231DQ6ZW35 169 aa14.4□□□□□ -0.1
HOXC11-201ENST00000243082 S100A7AQ86SG5 101 aa14.4□□□□□ -0.1
HOXC11-201ENST00000243082 TRAV20A0A0B4J274 112 aa14.39□□□□□ -0.11
HOXC11-201ENST00000243082 SCGB2A1O75556 95 aa14.39□□□□□ -0.11
HOXC11-201ENST00000243082 OR8I2Q8N0Y5 310 aa14.39□□□□□ -0.11
HOXC11-201ENST00000243082 HIST3H2BBQ8N257 126 aa14.39□□□□□ -0.11
HOXC11-201ENST00000243082 FMC1Q96HJ9 113 aa14.39□□□□□ -0.11
HOXC11-201ENST00000243082 GPR82Q96P67 336 aa14.39□□□□□ -0.11
HOXC11-201ENST00000243082 MLST8Q9BVC4 326 aa14.39□□□□□ -0.11
HOXC11-201ENST00000243082 PITPNC1Q9UKF7 332 aa14.39□□□□□ -0.11
HOXC11-201ENST00000243082 TRAPPC1Q9Y5R8 145 aa14.39□□□□□ -0.11
HOXC11-201ENST00000243082 S100A9P06702 114 aaKnown RBP14.39□□□□□ -0.11
HOXC11-201ENST00000243082 GATA3P23771 443 aa14.39□□□□□ -0.11
HOXC11-201ENST00000243082 CRIP2P52943 208 aaPredicted RBP14.39□□□□□ -0.11
HOXC11-201ENST00000243082 SMIM12Q96EX1 92 aa14.39□□□□□ -0.11
HOXC11-201ENST00000243082 H3BUX3 64 aa14.38□□□□□ -0.11
HOXC11-201ENST00000243082 CLEC3BP05452 202 aa14.38□□□□□ -0.11
HOXC11-201ENST00000243082 GPR183P32249 361 aa14.38□□□□□ -0.11
HOXC11-201ENST00000243082 KRTAP10-9P60411 292 aa14.38□□□□□ -0.11
HOXC11-201ENST00000243082 SIGLEC15Q6ZMC9 328 aa14.38□□□□□ -0.11
HOXC11-201ENST00000243082 SMIM27A0A1W2PRY6 76 aa14.37□□□□□ -0.11
HOXC11-201ENST00000243082 A6NDX4 124 aa14.37□□□□□ -0.11
HOXC11-201ENST00000243082 ZNF705GA8MUZ8 300 aaPredicted RBP14.37□□□□□ -0.11
HOXC11-201ENST00000243082 LTAP01374 205 aa14.37□□□□□ -0.11
HOXC11-201ENST00000243082 COL8A1P27658 744 aa14.37□□□□□ -0.11
HOXC11-201ENST00000243082 LY6EQ16553 131 aa14.37□□□□□ -0.11
HOXC11-201ENST00000243082 LYPD1Q8N2G4 141 aa14.37□□□□□ -0.11
HOXC11-201ENST00000243082 NUDT10Q8NFP7 164 aa14.37□□□□□ -0.11
HOXC11-201ENST00000243082 MBD6Q96DN6 1003 aa14.37□□□□□ -0.11
HOXC11-201ENST00000243082 NUDT11Q96G61 164 aa14.37□□□□□ -0.11
HOXC11-201ENST00000243082 CCDC140Q96MF4 163 aa14.37□□□□□ -0.11
HOXC11-201ENST00000243082 MS4A10Q96PG2 267 aa14.37□□□□□ -0.11
HOXC11-201ENST00000243082 GPR61Q9BZJ8 451 aa14.37□□□□□ -0.11
HOXC11-201ENST00000243082 SERTAD4Q9NUC0 356 aa14.37□□□□□ -0.11
HOXC11-201ENST00000243082 TRAV41A0A0B4J266 112 aa14.37□□□□□ -0.11
HOXC11-201ENST00000243082 FRMD6-AS1P0C7T7 363 aa14.37□□□□□ -0.11
HOXC11-201ENST00000243082 LINC01356Q8N9X3 169 aa14.37□□□□□ -0.11
HOXC11-201ENST00000243082 CMTM2Q8TAZ6 248 aa14.37□□□□□ -0.11
HOXC11-201ENST00000243082 IGHV3-35A0A0C4DH35 117 aa14.36□□□□□ -0.11
HOXC11-201ENST00000243082 CA1P00915 261 aaPredicted RBP14.36□□□□□ -0.11
HOXC11-201ENST00000243082 IGLV2-11P01706 119 aa14.36□□□□□ -0.11
HOXC11-201ENST00000243082 PDZD11Q5EBL8 140 aa14.36□□□□□ -0.11
HOXC11-201ENST00000243082 COA6Q5JTJ3 125 aaKnown RBP14.36□□□□□ -0.11
HOXC11-201ENST00000243082 LINC00527Q9UJ94 153 aa14.36□□□□□ -0.11
HOXC11-201ENST00000243082 ANKRD17O75179 2603 aaKnown RBP14.36□□□□□ -0.11
HOXC11-201ENST00000243082 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.36□□□□□ -0.11
HOXC11-201ENST00000243082 CENPEQ02224 2701 aa14.36□□□□□ -0.11
HOXC11-201ENST00000243082 SMIM6P0DI80 62 aa14.36□□□□□ -0.11
HOXC11-201ENST00000243082 TCL1AP56279 114 aa14.36□□□□□ -0.11
HOXC11-201ENST00000243082 PRR27Q6MZM9 219 aa14.36□□□□□ -0.11
HOXC11-201ENST00000243082 TOMM20LQ6UXN7 152 aa14.36□□□□□ -0.11
HOXC11-201ENST00000243082 GOLT1AQ6ZVE7 132 aa14.36□□□□□ -0.11
HOXC11-201ENST00000243082 TMEM190Q8WZ59 177 aa14.36□□□□□ -0.11
HOXC11-201ENST00000243082 GAR1Q9NY12 217 aaKnown RBP14.36□□□□□ -0.11
HOXC11-201ENST00000243082 RABAC1Q9UI14 185 aa14.36□□□□□ -0.11
HOXC11-201ENST00000243082 POLQO75417 2590 aa14.35□□□□□ -0.11
HOXC11-201ENST00000243082 TRAV8-1A0A0A6YYK1 113 aa14.35□□□□□ -0.11
HOXC11-201ENST00000243082 XKRY2A2RUG3 117 aa14.35□□□□□ -0.11
HOXC11-201ENST00000243082 GATCO43716 136 aaKnown RBP14.35□□□□□ -0.11
HOXC11-201ENST00000243082 CBLN1P23435 193 aa14.35□□□□□ -0.11
HOXC11-201ENST00000243082 CLEC19AQ6UXS0 136 aa14.35□□□□□ -0.11
HOXC11-201ENST00000243082 EEF1AKMT3Q96AZ1 226 aa14.35□□□□□ -0.11
HOXC11-201ENST00000243082 ZFAND3Q9H8U3 227 aa14.35□□□□□ -0.11
HOXC11-201ENST00000243082 PDE6HQ13956 83 aa14.34□□□□□ -0.11
HOXC11-201ENST00000243082 C9orf152Q5JTZ5 239 aa14.34□□□□□ -0.11
HOXC11-201ENST00000243082 LINC00322Q6ZN03 302 aaPredicted RBP14.34□□□□□ -0.11
HOXC11-201ENST00000243082 TMEM183AQ8IXX5 376 aa14.34□□□□□ -0.11
HOXC11-201ENST00000243082 IGHV3OR16-8A0A075B7F1 116 aa14.34□□□□□ -0.11
HOXC11-201ENST00000243082 TRBV7-1A0A0A6YYK4 115 aa14.34□□□□□ -0.11
HOXC11-201ENST00000243082 BMPR1BO00238 502 aa14.34□□□□□ -0.11
HOXC11-201ENST00000243082 IGF1P05019 195 aa14.34□□□□□ -0.11
HOXC11-201ENST00000243082 IER3P46695 156 aa14.34□□□□□ -0.11
HOXC11-201ENST00000243082 Q86TA4 180 aa14.34□□□□□ -0.11
HOXC11-201ENST00000243082 GRAMD2BQ96HH9 432 aa14.34□□□□□ -0.11
HOXC11-201ENST00000243082 SPINK4O60575 86 aa14.33□□□□□ -0.12
HOXC11-201ENST00000243082 IGHG2P01859 326 aa14.33□□□□□ -0.12
HOXC11-201ENST00000243082 RPL7P18124 248 aaKnown RBP14.33□□□□□ -0.12
HOXC11-201ENST00000243082 SLC35B1P78383 322 aa14.33□□□□□ -0.12
HOXC11-201ENST00000243082 MAPK1IP1LQ8NDC0 245 aa14.33□□□□□ -0.12
HOXC11-201ENST00000243082 TRBV6-1A0A0K0K1D8 114 aa14.32□□□□□ -0.12
HOXC11-201ENST00000243082 ATP5G2Q06055 141 aa14.32□□□□□ -0.12
HOXC11-201ENST00000243082 SMAD5-AS1Q9Y6J3 95 aa14.32□□□□□ -0.12
HOXC11-201ENST00000243082 USP9YO00507 2555 aaPredicted RBP14.32□□□□□ -0.12
HOXC11-201ENST00000243082 S100A2P29034 98 aa14.32□□□□□ -0.12
HOXC11-201ENST00000243082 GNB1LQ9BYB4 327 aa14.32□□□□□ -0.12
HOXC11-201ENST00000243082 PRSS22Q9GZN4 317 aa14.32□□□□□ -0.12
HOXC11-201ENST00000243082 MRPL18Q9H0U6 180 aaKnown RBP14.32□□□□□ -0.12
HOXC11-201ENST00000243082 GNB4Q9HAV0 340 aa14.32□□□□□ -0.12
HOXC11-201ENST00000243082 PTPN13Q12923 2485 aa14.32□□□□□ -0.12
HOXC11-201ENST00000243082 C19orf71A6NCJ1 209 aa14.31□□□□□ -0.12
HOXC11-201ENST00000243082 IZUMO1RA6ND01 250 aa14.31□□□□□ -0.12
HOXC11-201ENST00000243082 M0QZK8 103 aa14.31□□□□□ -0.12
HOXC11-201ENST00000243082 M0R3E3 92 aa14.31□□□□□ -0.12
HOXC11-201ENST00000243082 BLCAPP62952 87 aa14.31□□□□□ -0.12
HOXC11-201ENST00000243082 LOXL1Q08397 574 aaPredicted RBP14.31□□□□□ -0.12
HOXC11-201ENST00000243082 Q71RC1 249 aaPredicted RBP14.31□□□□□ -0.12
HOXC11-201ENST00000243082 TMEM75Q8N9X5 138 aa14.31□□□□□ -0.12
HOXC11-201ENST00000243082 ZNF492Q9P255 531 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms