RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 C15orf62A8K5M9 175 aa11.07□□□□□ -0.64
SF3A1-201ENST00000215793 ZNF415Q09FC8 603 aa11.07□□□□□ -0.64
SF3A1-201ENST00000215793 SRSF6Q13247 344 aaKnown RBP11.07□□□□□ -0.64
SF3A1-201ENST00000215793 KLF17Q5JT82 389 aaPredicted RBP11.07□□□□□ -0.64
SF3A1-201ENST00000215793 NYNRINQ9P2P1 1898 aaKnown RBP11.07□□□□□ -0.64
SF3A1-201ENST00000215793 SAP30O75446 220 aa11.07□□□□□ -0.64
SF3A1-201ENST00000215793 ATXN8Q156A1 80 aa11.07□□□□□ -0.64
SF3A1-201ENST00000215793 PSG3Q16557 428 aa11.07□□□□□ -0.64
SF3A1-201ENST00000215793 VGLL1Q99990 258 aa11.07□□□□□ -0.64
SF3A1-201ENST00000215793 LRRK1Q38SD2 2015 aa11.07□□□□□ -0.64
SF3A1-201ENST00000215793 M0R2P5 195 aa11.07□□□□□ -0.64
SF3A1-201ENST00000215793 LILRA1O75019 489 aa11.07□□□□□ -0.64
SF3A1-201ENST00000215793 LINC00158P58513 81 aa11.07□□□□□ -0.64
SF3A1-201ENST00000215793 WFDC12Q8WWY7 111 aa11.07□□□□□ -0.64
SF3A1-201ENST00000215793 LCN12Q6JVE5 192 aa11.07□□□□□ -0.64
SF3A1-201ENST00000215793 MPDZO75970 2070 aa11.06□□□□□ -0.64
SF3A1-201ENST00000215793 LYL1P12980 280 aa11.06□□□□□ -0.64
SF3A1-201ENST00000215793 LHFPL4Q7Z7J7 247 aa11.06□□□□□ -0.64
SF3A1-201ENST00000215793 NSUN5P1Q3KNT7 163 aa11.06□□□□□ -0.64
SF3A1-201ENST00000215793 TMEM155Q4W5P6 130 aa11.06□□□□□ -0.64
SF3A1-201ENST00000215793 SAMD5Q5TGI4 173 aa11.06□□□□□ -0.64
SF3A1-201ENST00000215793 NUP35Q8NFH5 326 aa11.06□□□□□ -0.64
SF3A1-201ENST00000215793 HEATR1Q9H583 2144 aaKnown RBP11.06□□□□□ -0.64
SF3A1-201ENST00000215793 MRPL27Q9P0M9 148 aaKnown RBP11.06□□□□□ -0.64
SF3A1-201ENST00000215793 TOMM40O96008 361 aa11.06□□□□□ -0.64
SF3A1-201ENST00000215793 RNASE2P10153 161 aaKnown RBP11.06□□□□□ -0.64
SF3A1-201ENST00000215793 FAM223BA6NKX1 122 aa11.06□□□□□ -0.64
SF3A1-201ENST00000215793 C1orf194Q5T5A4 169 aa11.06□□□□□ -0.64
SF3A1-201ENST00000215793 FAM223AQ8IWN6 122 aa11.06□□□□□ -0.64
SF3A1-201ENST00000215793 A0A0U1RRA0 63 aa11.05□□□□□ -0.64
SF3A1-201ENST00000215793 SH2D1AO60880 128 aa11.05□□□□□ -0.64
SF3A1-201ENST00000215793 PRTN3P24158 256 aa11.05□□□□□ -0.64
SF3A1-201ENST00000215793 CKS1BP61024 79 aa11.05□□□□□ -0.64
SF3A1-201ENST00000215793 GAGE13Q4V321 117 aa11.05□□□□□ -0.64
SF3A1-201ENST00000215793 ACTL10Q5JWF8 245 aa11.05□□□□□ -0.64
SF3A1-201ENST00000215793 C1QTNF4Q9BXJ3 329 aa11.05□□□□□ -0.64
SF3A1-201ENST00000215793 S100A7L2Q5SY68 101 aa11.05□□□□□ -0.64
SF3A1-201ENST00000215793 TEX43Q6ZNM6 134 aa11.05□□□□□ -0.64
SF3A1-201ENST00000215793 KIAA2026Q5HYC2 2103 aa11.05□□□□□ -0.64
SF3A1-201ENST00000215793 RNF144BQ7Z419 303 aa11.05□□□□□ -0.64
SF3A1-201ENST00000215793 PDE6HQ13956 83 aa11.05□□□□□ -0.64
SF3A1-201ENST00000215793 BRD3OSQ6XYD6 125 aa11.05□□□□□ -0.64
SF3A1-201ENST00000215793 REG4Q9BYZ8 158 aa11.05□□□□□ -0.64
SF3A1-201ENST00000215793 USF3Q68DE3 2245 aa11.04□□□□□ -0.64
SF3A1-201ENST00000215793 ZNF474Q6S9Z5 364 aaPredicted RBP11.04□□□□□ -0.64
SF3A1-201ENST00000215793 PIP4P2Q8N4L2 257 aa11.04□□□□□ -0.64
SF3A1-201ENST00000215793 JPT2Q9H910 190 aa11.04□□□□□ -0.64
SF3A1-201ENST00000215793 THADAQ6YHU6 1953 aa11.04□□□□□ -0.64
SF3A1-201ENST00000215793 PHLDA1Q8WV24 401 aaPredicted RBP11.04□□□□□ -0.64
SF3A1-201ENST00000215793 TRGV1A0A0A0MS02 117 aa11.04□□□□□ -0.64
SF3A1-201ENST00000215793 SLC25A16P16260 332 aa11.04□□□□□ -0.64
SF3A1-201ENST00000215793 Q8TAT8 98 aa11.04□□□□□ -0.64
SF3A1-201ENST00000215793 RASL10AQ92737 203 aa11.04□□□□□ -0.64
SF3A1-201ENST00000215793 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.03□□□□□ -0.643e-6■■□□□ 13.7
SF3A1-201ENST00000215793 IGHV3-64A0A075B6Q5 118 aa11.03□□□□□ -0.64
SF3A1-201ENST00000215793 FCN3O75636 299 aa11.03□□□□□ -0.64
SF3A1-201ENST00000215793 CFPP27918 469 aa11.03□□□□□ -0.64
SF3A1-201ENST00000215793 BCL6BQ8N143 479 aaPredicted RBP11.03□□□□□ -0.64
SF3A1-201ENST00000215793 A0A0G2JMZ2 1700 aa11.03□□□□□ -0.64
SF3A1-201ENST00000215793 LRRC37A2A6NM11 1700 aa11.03□□□□□ -0.64
SF3A1-201ENST00000215793 CRIM1Q9NZV1 1036 aa11.03□□□□□ -0.64
SF3A1-201ENST00000215793 TDGF1P3P51864 188 aa11.03□□□□□ -0.64
SF3A1-201ENST00000215793 NDPQ00604 133 aa11.03□□□□□ -0.64
SF3A1-201ENST00000215793 Q6ZRM9 215 aa11.03□□□□□ -0.64
SF3A1-201ENST00000215793 RHPN1-AS1Q9BWJ2 59 aa11.03□□□□□ -0.64
SF3A1-201ENST00000215793 TRAV8-4A0A0B4J246 113 aa11.03□□□□□ -0.64
SF3A1-201ENST00000215793 A0A0G2JRQ6 117 aa11.03□□□□□ -0.64
SF3A1-201ENST00000215793 GUSBP1Q15486 140 aa11.03□□□□□ -0.64
SF3A1-201ENST00000215793 C5orf24Q7Z6I8 188 aa11.03□□□□□ -0.64
SF3A1-201ENST00000215793 TMEM256Q8N2U0 113 aa11.03□□□□□ -0.64
SF3A1-201ENST00000215793 GNLYP22749 145 aa11.02□□□□□ -0.64
SF3A1-201ENST00000215793 TRAV8-1A0A0A6YYK1 113 aa11.02□□□□□ -0.65
SF3A1-201ENST00000215793 TMEM249Q2WGJ8 235 aa11.02□□□□□ -0.65
SF3A1-201ENST00000215793 SIGMAR1Q99720 223 aa11.02□□□□□ -0.65
SF3A1-201ENST00000215793 C3orf79P0CE67 100 aa11.02□□□□□ -0.65
SF3A1-201ENST00000215793 C11orf68Q9H3H3 251 aaKnown RBP11.02□□□□□ -0.65
SF3A1-201ENST00000215793 CST9LQ9H4G1 147 aa11.02□□□□□ -0.65
SF3A1-201ENST00000215793 DAZ1Q9NQZ3 744 aaKnown RBP11.02□□□□□ -0.65
SF3A1-201ENST00000215793 INSP01308 110 aa11.02□□□□□ -0.65
SF3A1-201ENST00000215793 ZNF562Q6V9R5 426 aa11.02□□□□□ -0.65
SF3A1-201ENST00000215793 SHANK2-AS3Q9BTD1 123 aa11.02□□□□□ -0.65
SF3A1-201ENST00000215793 WNK3Q9BYP7 1800 aa11.02□□□□□ -0.65
SF3A1-201ENST00000215793 PAX4O43316 350 aa11.01□□□□□ -0.65
SF3A1-201ENST00000215793 IGKV1-16P04430 117 aa11.01□□□□□ -0.65
SF3A1-201ENST00000215793 C14orf178Q8N769 122 aaPredicted RBP11.01□□□□□ -0.65
SF3A1-201ENST00000215793 ARFGEF3Q5TH69 2177 aa11.01□□□□□ -0.65
SF3A1-201ENST00000215793 DOCK7Q96N67 2140 aa11.01□□□□□ -0.65
SF3A1-201ENST00000215793 COL8A2P25067 703 aa11.01□□□□□ -0.65
SF3A1-201ENST00000215793 LYPD2Q6UXB3 125 aa11.01□□□□□ -0.65
SF3A1-201ENST00000215793 GFRA4Q9GZZ7 299 aa11.01□□□□□ -0.65
SF3A1-201ENST00000215793 FER1L5A0AVI2 2057 aa11.01□□□□□ -0.65
SF3A1-201ENST00000215793 SYS1-DBNDD2H3BUS1 97 aa11.01□□□□□ -0.65
SF3A1-201ENST00000215793 ETV2O00321 342 aaPredicted RBP11.01□□□□□ -0.65
SF3A1-201ENST00000215793 ZNF581Q9P0T4 197 aa11.01□□□□□ -0.65
SF3A1-201ENST00000215793 LSM4Q9Y4Z0 139 aaKnown RBP11.01□□□□□ -0.65
SF3A1-201ENST00000215793 PRB4P10163 310 aaPredicted RBP11.01□□□□□ -0.65
SF3A1-201ENST00000215793 CSTL1Q9H114 145 aa11.01□□□□□ -0.65
SF3A1-201ENST00000215793 GBF1Q92538 1859 aa11□□□□□ -0.65
SF3A1-201ENST00000215793 SAA4P35542 130 aa11□□□□□ -0.65
SF3A1-201ENST00000215793 Q86TA4 180 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 83.8 ms