RNA–Protein interactions for RNA: YLR360W

VPS38, Transcript of Part of a Vps34p phosphatidylinositol 3-kinase complex, yeast

Gene VPS38, Length 1,320 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS38	YLR360W	EAF5	P39995	279 aa		4.26	□□□□□ -1.73
VPS38	YLR360W	EMP65	P40085	556 aa		4.26	□□□□□ -1.73
VPS38	YLR360W	IRC5	P43610	853 aa		4.26	□□□□□ -1.73
VPS38	YLR360W	PEX14	P53112	341 aa		4.26	□□□□□ -1.73
VPS38	YLR360W	YOR378W	Q08902	515 aa		4.26	□□□□□ -1.73
VPS38	YLR360W	NDJ1	Q12366	352 aa		4.26	□□□□□ -1.73
VPS38	YLR360W	PCK1	P10963	549 aa		4.25	□□□□□ -1.73
VPS38	YLR360W	YMC1	P32331	307 aa		4.25	□□□□□ -1.73
VPS38	YLR360W	LRO1	P40345	661 aa		4.25	□□□□□ -1.73
VPS38	YLR360W	IMO32	P53219	342 aa		4.25	□□□□□ -1.73
VPS38	YLR360W	HOL1	P53389	586 aa		4.25	□□□□□ -1.73
VPS38	YLR360W	ARR3	Q06598	404 aa		4.25	□□□□□ -1.73
VPS38	YLR360W	SEC12	P11655	471 aa		4.24	□□□□□ -1.73
VPS38	YLR360W	VPS34	P22543	875 aa		4.24	□□□□□ -1.73
VPS38	YLR360W	MRC1	P25588	1096 aa		4.24	□□□□□ -1.73
VPS38	YLR360W	CNE1	P27825	502 aa		4.24	□□□□□ -1.73
VPS38	YLR360W	CAP1	P28495	268 aa	Known RBP	4.24	□□□□□ -1.73
VPS38	YLR360W	PLC1	P32383	869 aa		4.24	□□□□□ -1.73
VPS38	YLR360W	ENP1	P38333	483 aa	Known RBP	4.24	□□□□□ -1.73
VPS38	YLR360W	PAF1	P38351	445 aa		4.24	□□□□□ -1.73
VPS38	YLR360W	YJL193W	P39542	402 aa		4.24	□□□□□ -1.73
VPS38	YLR360W	PEF1	P53238	335 aa		4.24	□□□□□ -1.73
VPS38	YLR360W	BUD17	P53727	317 aa		4.24	□□□□□ -1.73
VPS38	YLR360W	MTD1	Q02046	320 aa	Known RBP	4.24	□□□□□ -1.73
VPS38	YLR360W	PEX15	Q08215	383 aa		4.24	□□□□□ -1.73
VPS38	YLR360W	ULA1	Q12059	462 aa		4.24	□□□□□ -1.73
VPS38	YLR360W	ZPS1	Q12512	249 aa		4.24	□□□□□ -1.73
VPS38	YLR360W	VPS5	Q92331	675 aa		4.24	□□□□□ -1.73
VPS38	YLR360W	VPS33	P20795	691 aa		4.23	□□□□□ -1.73
VPS38	YLR360W	YGL117W	P53133	265 aa		4.23	□□□□□ -1.73
VPS38	YLR360W	PHM6	Q05637	104 aa		4.23	□□□□□ -1.73
VPS38	YLR360W	YDL073W	Q07454	984 aa		4.23	□□□□□ -1.73
VPS38	YLR360W	CWH43	P25618	953 aa		4.22	□□□□□ -1.73
VPS38	YLR360W	STL1	P39932	569 aa		4.22	□□□□□ -1.73
VPS38	YLR360W	CPR8	P53728	308 aa		4.22	□□□□□ -1.73
VPS38	YLR360W	THI7	Q05998	598 aa		4.22	□□□□□ -1.73
VPS38	YLR360W	TGS1	Q12052	315 aa		4.22	□□□□□ -1.73
VPS38	YLR360W	HOS1	Q12214	470 aa		4.22	□□□□□ -1.73
VPS38	YLR360W	YNL162W-A	Q3E7A8	72 aa		4.22	□□□□□ -1.73
VPS38	YLR360W	HOM2	P13663	365 aa	Known RBP	4.21	□□□□□ -1.73
VPS38	YLR360W	HOP1	P20050	605 aa		4.21	□□□□□ -1.73
VPS38	YLR360W	ARG1	P22768	420 aa		4.21	□□□□□ -1.73
VPS38	YLR360W	AAD3	P25612	363 aa		4.21	□□□□□ -1.73
VPS38	YLR360W	MNT2	P53059	558 aa		4.21	□□□□□ -1.73
VPS38	YLR360W	ARG7	Q04728	441 aa		4.21	□□□□□ -1.73
VPS38	YLR360W	COQ11	Q05892	277 aa		4.21	□□□□□ -1.73
VPS38	YLR360W	MRI1	Q06489	411 aa	Known RBP	4.21	□□□□□ -1.73
VPS38	YLR360W	CPA2	P03965	1118 aa	Known RBP	4.21	□□□□□ -1.74
VPS38	YLR360W	ERG11	P10614	530 aa		4.21	□□□□□ -1.74
VPS38	YLR360W	BET2	P20133	325 aa		4.21	□□□□□ -1.74
VPS38	YLR360W	DSS4	P32601	143 aa		4.21	□□□□□ -1.74
VPS38	YLR360W	ORC2	P32833	620 aa		4.21	□□□□□ -1.74
VPS38	YLR360W	LOT5	P34234	306 aa		4.21	□□□□□ -1.74
VPS38	YLR360W	YIL092W	P40497	633 aa		4.21	□□□□□ -1.74
VPS38	YLR360W	ATG36	P46983	293 aa		4.21	□□□□□ -1.74
VPS38	YLR360W	COQ6	P53318	479 aa		4.21	□□□□□ -1.74
VPS38	YLR360W	OSW1	Q08692	278 aa		4.21	□□□□□ -1.74
VPS38	YLR360W	SLX4	Q12098	748 aa		4.21	□□□□□ -1.74
VPS38	YLR360W	RTK1	Q12100	620 aa	Predicted RBP	4.21	□□□□□ -1.74
VPS38	YLR360W	WHI2	P12611	486 aa		4.2	□□□□□ -1.74
VPS38	YLR360W	CCL1	P37366	393 aa		4.2	□□□□□ -1.74
VPS38	YLR360W	TAX4	P47030	604 aa		4.2	□□□□□ -1.74
VPS38	YLR360W	YNL018C	P53976	612 aa		4.2	□□□□□ -1.74
VPS38	YLR360W	RPS15	Q01855	142 aa	Known RBP	4.2	□□□□□ -1.74
VPS38	YLR360W	HOF1	Q05080	669 aa		4.2	□□□□□ -1.74
VPS38	YLR360W	URA3	P03962	267 aa		4.19	□□□□□ -1.74
VPS38	YLR360W	PET309	P32522	965 aa	Predicted RBP	4.19	□□□□□ -1.74
VPS38	YLR360W	MAD2	P40958	196 aa		4.19	□□□□□ -1.74
VPS38	YLR360W	GFD1	Q04839	188 aa	Known RBP	4.19	□□□□□ -1.74
VPS38	YLR360W	NUR1	Q12066	484 aa		4.19	□□□□□ -1.74
VPS38	YLR360W	AI5_ALPHA	Q9ZZX1	630 aa		4.19	□□□□□ -1.74
VPS38	YLR360W	YPK1	P12688	680 aa	Known RBP	4.18	□□□□□ -1.74
VPS38	YLR360W	MDM10	P18409	493 aa		4.18	□□□□□ -1.74
VPS38	YLR360W	RNR3	P21672	869 aa	Known RBP	4.18	□□□□□ -1.74
VPS38	YLR360W	MRPL9	P31334	269 aa		4.18	□□□□□ -1.74
VPS38	YLR360W	YNR071C	P53757	342 aa		4.18	□□□□□ -1.74
VPS38	YLR360W	USA1	Q03714	838 aa		4.18	□□□□□ -1.74
VPS38	YLR360W	DIN7	Q12086	430 aa		4.18	□□□□□ -1.74
VPS38	YLR360W	PSF3	Q12146	194 aa		4.18	□□□□□ -1.74
VPS38	YLR360W	RPL7A	P05737	244 aa	Known RBP	4.17	□□□□□ -1.74
VPS38	YLR360W	HEM1	P09950	548 aa	Predicted RBP	4.17	□□□□□ -1.74
VPS38	YLR360W	PMA2	P19657	947 aa		4.17	□□□□□ -1.74
VPS38	YLR360W	NUP1	P20676	1076 aa		4.17	□□□□□ -1.74
VPS38	YLR360W	PHO3	P24031	467 aa		4.17	□□□□□ -1.74
VPS38	YLR360W	STB5	P38699	743 aa		4.17	□□□□□ -1.74
VPS38	YLR360W	SSP120	P39931	234 aa	Known RBP	4.17	□□□□□ -1.74
VPS38	YLR360W	SCS2	P40075	244 aa	Known RBP	4.17	□□□□□ -1.74
VPS38	YLR360W	SAP4	P53036	818 aa		4.17	□□□□□ -1.74
VPS38	YLR360W	SND1	Q04007	877 aa		4.17	□□□□□ -1.74
VPS38	YLR360W	RPL7B	Q12213	244 aa	Known RBP	4.17	□□□□□ -1.74
VPS38	YLR360W	SEC3	P33332	1336 aa	Known RBP	4.16	□□□□□ -1.74
VPS38	YLR360W	LEU2	P04173	364 aa	Predicted RBP	4.16	□□□□□ -1.74
VPS38	YLR360W	TOM20	P35180	183 aa		4.16	□□□□□ -1.74
VPS38	YLR360W	YPT10	P38146	199 aa		4.16	□□□□□ -1.74
VPS38	YLR360W	SAW1	P39735	261 aa		4.16	□□□□□ -1.74
VPS38	YLR360W	YJL043W	P47053	257 aa		4.16	□□□□□ -1.74
VPS38	YLR360W	YNL034W	P53963	612 aa		4.16	□□□□□ -1.74
VPS38	YLR360W	WAR1	Q03631	944 aa		4.16	□□□□□ -1.74
VPS38	YLR360W	DBP10	Q12389	995 aa	Known RBP	4.16	□□□□□ -1.74
VPS38	YLR360W	CBP3	P21560	335 aa		4.15	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 13.3 ms