RNA–Protein interactions for RNA: ENST00000638725.1

SNIP1-204, Transcript of Smad nuclear interacting protein 1, humanhuman

TSL 2

Gene SNIP1, Length 2,761 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNIP1-204ENST00000638725 CARD6Q9BX69 1037 aa12.59□□□□□ -0.39
SNIP1-204ENST00000638725 NBPF3Q9H094 633 aa12.59□□□□□ -0.39
SNIP1-204ENST00000638725 FANCLQ9NW38 375 aa12.59□□□□□ -0.39
SNIP1-204ENST00000638725 DDX60Q8IY21 1712 aaKnown RBP12.59□□□□□ -0.39
SNIP1-204ENST00000638725 ZMYM6O95789 1325 aa12.59□□□□□ -0.39
SNIP1-204ENST00000638725 NUP188Q5SRE5 1749 aa12.59□□□□□ -0.39
SNIP1-204ENST00000638725 TOP1P11387 765 aaKnown RBP12.58□□□□□ -0.39
SNIP1-204ENST00000638725 PLA2G4AP47712 749 aa12.58□□□□□ -0.39
SNIP1-204ENST00000638725 METAP2P50579 478 aaKnown RBP eCLIP12.58□□□□□ -0.39
SNIP1-204ENST00000638725 GNL2Q13823 731 aaKnown RBP12.58□□□□□ -0.39
SNIP1-204ENST00000638725 HSP90AA4PQ58FG1 418 aa12.58□□□□□ -0.39
SNIP1-204ENST00000638725 CYB5R4Q7L1T6 521 aa12.58□□□□□ -0.39
SNIP1-204ENST00000638725 METTL16Q86W50 562 aaKnown RBP12.58□□□□□ -0.39
SNIP1-204ENST00000638725 SENP2Q9HC62 589 aa12.58□□□□□ -0.39
SNIP1-204ENST00000638725 ATG3Q9NT62 314 aa12.58□□□□□ -0.39
SNIP1-204ENST00000638725 PPP6R2O75170 966 aa12.58□□□□□ -0.4
SNIP1-204ENST00000638725 CDC27P30260 824 aa12.58□□□□□ -0.4
SNIP1-204ENST00000638725 CCDC57Q2TAC2 916 aa12.58□□□□□ -0.4
SNIP1-204ENST00000638725 TBC1D10CQ8IV04 446 aa12.58□□□□□ -0.4
SNIP1-204ENST00000638725 FOXP4Q8IVH2 680 aaPredicted RBP12.58□□□□□ -0.4
SNIP1-204ENST00000638725 INTS13Q9NVM9 706 aa12.58□□□□□ -0.4
SNIP1-204ENST00000638725 PARP3Q9Y6F1 533 aa12.58□□□□□ -0.4
SNIP1-204ENST00000638725 TADA3O75528 432 aa12.58□□□□□ -0.4
SNIP1-204ENST00000638725 ZRANB2O95218 330 aaKnown RBP eCLIP12.58□□□□□ -0.4
SNIP1-204ENST00000638725 PDE4BQ07343 736 aa12.58□□□□□ -0.4
SNIP1-204ENST00000638725 LONRF3Q496Y0 759 aa12.58□□□□□ -0.4
SNIP1-204ENST00000638725 TMEM139Q8IV31 216 aa12.58□□□□□ -0.4
SNIP1-204ENST00000638725 MAP3K14Q99558 947 aa12.58□□□□□ -0.4
SNIP1-204ENST00000638725 ANGEL1Q9UNK9 670 aaKnown RBP12.58□□□□□ -0.4
SNIP1-204ENST00000638725 CCDC66A2RUB6 948 aa12.57□□□□□ -0.4
SNIP1-204ENST00000638725 VWA3AA6NCI4 1184 aa12.57□□□□□ -0.4
SNIP1-204ENST00000638725 UBE2Q2LH0YL09 131 aa12.57□□□□□ -0.4
SNIP1-204ENST00000638725 FOXN1O15353 648 aa12.57□□□□□ -0.4
SNIP1-204ENST00000638725 SEC31AO94979 1220 aaKnown RBP12.57□□□□□ -0.4
SNIP1-204ENST00000638725 RESP18Q5W5W9 173 aa12.57□□□□□ -0.4
SNIP1-204ENST00000638725 TMCO3Q6UWJ1 677 aa12.57□□□□□ -0.4
SNIP1-204ENST00000638725 OLFM4Q6UX06 510 aa12.57□□□□□ -0.4
SNIP1-204ENST00000638725 MICU3Q86XE3 530 aa12.57□□□□□ -0.4
SNIP1-204ENST00000638725 JMYQ8N9B5 988 aa12.57□□□□□ -0.4
SNIP1-204ENST00000638725 EPC1Q9H2F5 836 aa12.57□□□□□ -0.4
SNIP1-204ENST00000638725 AKAP2Q9Y2D5 859 aa12.57□□□□□ -0.4
SNIP1-204ENST00000638725 PCDHA5Q9Y5H7 936 aa12.57□□□□□ -0.4
SNIP1-204ENST00000638725 C1orf167Q5SNV9 1468 aa12.57□□□□□ -0.4
SNIP1-204ENST00000638725 TRDNQ13061 729 aa12.57□□□□□ -0.4
SNIP1-204ENST00000638725 SPECC1Q5M775 1068 aa12.57□□□□□ -0.4
SNIP1-204ENST00000638725 ARGLU1Q9NWB6 273 aaPredicted RBP12.57□□□□□ -0.4
SNIP1-204ENST00000638725 PPP2R2CQ9Y2T4 447 aa12.57□□□□□ -0.4
SNIP1-204ENST00000638725 ALS2Q96Q42 1657 aa12.57□□□□□ -0.4
SNIP1-204ENST00000638725 WDR19Q8NEZ3 1342 aa12.57□□□□□ -0.4
SNIP1-204ENST00000638725 SH2B2O14492 632 aaPredicted RBP12.56□□□□□ -0.4
SNIP1-204ENST00000638725 BMP6P22004 513 aa12.56□□□□□ -0.4
SNIP1-204ENST00000638725 APOA5Q6Q788 366 aa12.56□□□□□ -0.4
SNIP1-204ENST00000638725 KRBA2Q6ZNG9 492 aa12.56□□□□□ -0.4
SNIP1-204ENST00000638725 CNNM3Q8NE01 707 aa12.56□□□□□ -0.4
SNIP1-204ENST00000638725 MYL10Q9BUA6 226 aa12.56□□□□□ -0.4
SNIP1-204ENST00000638725 A0A0U1RQG5 324 aaPredicted RBP12.56□□□□□ -0.4
SNIP1-204ENST00000638725 FAM237AA0A1B0GTK4 181 aa12.56□□□□□ -0.4
SNIP1-204ENST00000638725 B4E1Z4 1266 aa12.56□□□□□ -0.4
SNIP1-204ENST00000638725 SRRTQ9BXP5 876 aaKnown RBP12.56□□□□□ -0.4
SNIP1-204ENST00000638725 PKD1L3Q7Z443 1732 aa12.56□□□□□ -0.4
SNIP1-204ENST00000638725 ARHGAP6O43182 974 aa12.55□□□□□ -0.4
SNIP1-204ENST00000638725 ZSCAN12O43309 604 aa12.55□□□□□ -0.4
SNIP1-204ENST00000638725 RANBP6O60518 1105 aaKnown RBP12.55□□□□□ -0.4
SNIP1-204ENST00000638725 TAF7LQ5H9L4 462 aa12.55□□□□□ -0.4
SNIP1-204ENST00000638725 CCDC102BQ68D86 513 aa12.55□□□□□ -0.4
SNIP1-204ENST00000638725 FCHSD1Q86WN1 690 aa12.55□□□□□ -0.4
SNIP1-204ENST00000638725 C19orf44Q9H6X5 657 aa12.55□□□□□ -0.4
SNIP1-204ENST00000638725 KCNH3Q9ULD8 1083 aa12.55□□□□□ -0.4
SNIP1-204ENST00000638725 COL18A1P39060 1754 aa12.55□□□□□ -0.4
SNIP1-204ENST00000638725 EFCAB8A8MWE9 144 aa12.55□□□□□ -0.4
SNIP1-204ENST00000638725 CDKL5O76039 1030 aa12.55□□□□□ -0.4
SNIP1-204ENST00000638725 MCAMP43121 646 aa12.55□□□□□ -0.4
SNIP1-204ENST00000638725 PROSER2Q86WR7 435 aaPredicted RBP12.55□□□□□ -0.4
SNIP1-204ENST00000638725 PDILTQ8N807 584 aa12.55□□□□□ -0.4
SNIP1-204ENST00000638725 WDR24Q96S15 920 aa12.55□□□□□ -0.4
SNIP1-204ENST00000638725 ZNF330Q9Y3S2 320 aaPredicted RBP12.55□□□□□ -0.4
SNIP1-204ENST00000638725 CUTAO60888 179 aa12.54□□□□□ -0.4
SNIP1-204ENST00000638725 APPP05067 770 aa12.54□□□□□ -0.4
SNIP1-204ENST00000638725 CYP2C19P33261 490 aa12.54□□□□□ -0.4
SNIP1-204ENST00000638725 BAG1Q99933 345 aaPredicted RBP12.54□□□□□ -0.4
SNIP1-204ENST00000638725 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.54□□□□□ -0.4
SNIP1-204ENST00000638725 MST1RQ04912 1400 aa12.54□□□□□ -0.4
SNIP1-204ENST00000638725 ZBTB22O15209 634 aa12.54□□□□□ -0.4
SNIP1-204ENST00000638725 POLR3GO15318 223 aaPredicted RBP12.54□□□□□ -0.4
SNIP1-204ENST00000638725 ADD2P35612 726 aa12.54□□□□□ -0.4
SNIP1-204ENST00000638725 IARSP41252 1262 aaKnown RBP12.54□□□□□ -0.4
SNIP1-204ENST00000638725 ADKP55263 362 aaKnown RBP12.54□□□□□ -0.4
SNIP1-204ENST00000638725 GNG11P61952 73 aa12.54□□□□□ -0.4
SNIP1-204ENST00000638725 NTRK3Q16288 839 aa12.54□□□□□ -0.4
SNIP1-204ENST00000638725 SLC9C2Q5TAH2 1124 aa12.54□□□□□ -0.4
SNIP1-204ENST00000638725 CPLX2Q6PUV4 134 aaKnown RBP12.54□□□□□ -0.4
SNIP1-204ENST00000638725 FAM89AQ96GI7 184 aa12.54□□□□□ -0.4
SNIP1-204ENST00000638725 INCENPQ9NQS7 918 aa12.54□□□□□ -0.4
SNIP1-204ENST00000638725 UBN2Q6ZU65 1347 aa12.54□□□□□ -0.4
SNIP1-204ENST00000638725 ECM29Q5VYK3 1845 aa12.54□□□□□ -0.4
SNIP1-204ENST00000638725 MYH7P12883 1935 aa12.53□□□□□ -0.4
SNIP1-204ENST00000638725 GOLGA8AA7E2F4 631 aa12.53□□□□□ -0.4
SNIP1-204ENST00000638725 ZBTB43O43298 467 aa12.53□□□□□ -0.4
SNIP1-204ENST00000638725 FAM193AP78312 1265 aa12.53□□□□□ -0.4
SNIP1-204ENST00000638725 GRIN1Q05586 938 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms