RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	ADCK5	Q3MIX3	580 aa		14.01	□□□□□ -0.17
CLN6-223	ENST00000637823	DACT2	Q5SW24	774 aa		14.01	□□□□□ -0.17
CLN6-223	ENST00000637823	GIMAP6	Q6P9H5	292 aa		14.01	□□□□□ -0.17
CLN6-223	ENST00000637823	CERS5	Q8N5B7	392 aa		14.01	□□□□□ -0.17
CLN6-223	ENST00000637823	MRI	Q9BWK5	157 aa		14.01	□□□□□ -0.17
CLN6-223	ENST00000637823	TAOK3	Q9H2K8	898 aa		14.01	□□□□□ -0.17
CLN6-223	ENST00000637823	AATF	Q9NY61	560 aa	Known RBP eCLIP	14.01	□□□□□ -0.17
CLN6-223	ENST00000637823	GPR75-ASB3	A0A0A6YYF3	556 aa		14	□□□□□ -0.17
CLN6-223	ENST00000637823	PRKAB2	O43741	272 aa		14	□□□□□ -0.17
CLN6-223	ENST00000637823	HMGB1	P09429	215 aa	Known RBP	14	□□□□□ -0.17
CLN6-223	ENST00000637823	PLCG2	P16885	1265 aa		14	□□□□□ -0.17
CLN6-223	ENST00000637823	CAST	P20810	708 aa	Known RBP	14	□□□□□ -0.17
CLN6-223	ENST00000637823	DIXDC1	Q155Q3	683 aa		14	□□□□□ -0.17
CLN6-223	ENST00000637823	RUFY3	Q7L099	469 aa		14	□□□□□ -0.17
CLN6-223	ENST00000637823	NIM1K	Q8IY84	436 aa		14	□□□□□ -0.17
CLN6-223	ENST00000637823	FHDC1	Q9C0D6	1143 aa	Predicted RBP	14	□□□□□ -0.17
CLN6-223	ENST00000637823	NAPB	Q9H115	298 aa		14	□□□□□ -0.17
CLN6-223	ENST00000637823	ZNRF3	Q9ULT6	936 aa		14	□□□□□ -0.17
CLN6-223	ENST00000637823	FOCAD	Q5VW36	1801 aa		13.99	□□□□□ -0.17
CLN6-223	ENST00000637823	ECM29	Q5VYK3	1845 aa		13.99	□□□□□ -0.17
CLN6-223	ENST00000637823	GAK	O14976	1311 aa		13.99	□□□□□ -0.17
CLN6-223	ENST00000637823	YDJC	A8MPS7	323 aa		13.99	□□□□□ -0.17
CLN6-223	ENST00000637823		E7EWF7	191 aa		13.99	□□□□□ -0.17
CLN6-223	ENST00000637823	HDLBP	Q00341	1268 aa	Known RBP	13.99	□□□□□ -0.17
CLN6-223	ENST00000637823	BLOC1S2	Q6QNY1	142 aa		13.99	□□□□□ -0.17
CLN6-223	ENST00000637823	HHIPL2	Q6UWX4	724 aa		13.99	□□□□□ -0.17
CLN6-223	ENST00000637823	NEK1	Q96PY6	1258 aa		13.99	□□□□□ -0.17
CLN6-223	ENST00000637823	UPF3B	Q9BZI7	483 aa	Known RBP	13.99	□□□□□ -0.17
CLN6-223	ENST00000637823	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	13.99	□□□□□ -0.17
CLN6-223	ENST00000637823	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	13.99	□□□□□ -0.17
CLN6-223	ENST00000637823	ATP8A2	Q9NTI2	1148 aa		13.99	□□□□□ -0.17
CLN6-223	ENST00000637823	TTF2	Q9UNY4	1162 aa	Known RBP	13.99	□□□□□ -0.17
CLN6-223	ENST00000637823	TAF6L	Q9Y6J9	622 aa		13.99	□□□□□ -0.17
CLN6-223	ENST00000637823	DICER1	Q9UPY3	1922 aa	Known RBP	13.99	□□□□□ -0.17
CLN6-223	ENST00000637823	MYH1	P12882	1939 aa		13.98	□□□□□ -0.17
CLN6-223	ENST00000637823	NFKBIE	O00221	500 aa		13.98	□□□□□ -0.17
CLN6-223	ENST00000637823	CD2BP2	O95400	341 aa	Known RBP	13.98	□□□□□ -0.17
CLN6-223	ENST00000637823	VIL1	P09327	827 aa	Known RBP	13.98	□□□□□ -0.17
CLN6-223	ENST00000637823	TDO2	P48775	406 aa		13.98	□□□□□ -0.17
CLN6-223	ENST00000637823	JDP2	Q8WYK2	163 aa		13.98	□□□□□ -0.17
CLN6-223	ENST00000637823	TTC14	Q96N46	770 aa		13.98	□□□□□ -0.17
CLN6-223	ENST00000637823	MXD3	Q9BW11	206 aa		13.98	□□□□□ -0.17
CLN6-223	ENST00000637823	PDRG1	Q9NUG6	133 aa		13.98	□□□□□ -0.17
CLN6-223	ENST00000637823	MYO3B	Q8WXR4	1341 aa		13.97	□□□□□ -0.17
CLN6-223	ENST00000637823		F8W031	263 aa	Predicted RBP	13.97	□□□□□ -0.17
CLN6-223	ENST00000637823		K7ELQ4	463 aa	Predicted RBP	13.97	□□□□□ -0.17
CLN6-223	ENST00000637823	RPS6KB1	P23443	525 aa		13.97	□□□□□ -0.17
CLN6-223	ENST00000637823	BTD	P43251	543 aa		13.97	□□□□□ -0.17
CLN6-223	ENST00000637823	SLC4A3	P48751	1232 aa		13.97	□□□□□ -0.17
CLN6-223	ENST00000637823	HAND2	P61296	217 aa		13.97	□□□□□ -0.17
CLN6-223	ENST00000637823	STOX1	Q6ZVD7	989 aa		13.97	□□□□□ -0.17
CLN6-223	ENST00000637823	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	13.97	□□□□□ -0.17
CLN6-223	ENST00000637823	SDR42E1	Q8WUS8	393 aa		13.97	□□□□□ -0.17
CLN6-223	ENST00000637823	TEKT1	Q969V4	418 aa		13.97	□□□□□ -0.17
CLN6-223	ENST00000637823	COL4A5	P29400	1685 aa		13.97	□□□□□ -0.17
CLN6-223	ENST00000637823	SBF1	O95248	1867 aa		13.97	□□□□□ -0.17
CLN6-223	ENST00000637823	LAMB1	P07942	1786 aa		13.96	□□□□□ -0.17
CLN6-223	ENST00000637823	NAV1	Q8NEY1	1877 aa		13.96	□□□□□ -0.17
CLN6-223	ENST00000637823	SBK1	Q52WX2	424 aa		13.96	□□□□□ -0.17
CLN6-223	ENST00000637823	RSBN1L	Q6PCB5	846 aa	Predicted RBP	13.96	□□□□□ -0.17
CLN6-223	ENST00000637823	DHX32	Q7L7V1	743 aa	Known RBP	13.96	□□□□□ -0.17
CLN6-223	ENST00000637823	SYT17	Q9BSW7	474 aa		13.96	□□□□□ -0.17
CLN6-223	ENST00000637823	DCP1A	Q9NPI6	582 aa	Predicted RBP	13.96	□□□□□ -0.17
CLN6-223	ENST00000637823	ANAPC4	Q9UJX5	808 aa		13.96	□□□□□ -0.17
CLN6-223	ENST00000637823	DAGLA	Q9Y4D2	1042 aa		13.96	□□□□□ -0.17
CLN6-223	ENST00000637823	PSMD14	O00487	310 aa		13.95	□□□□□ -0.18
CLN6-223	ENST00000637823	RAD17	O75943	681 aa		13.95	□□□□□ -0.18
CLN6-223	ENST00000637823	CPA1	P15085	419 aa		13.95	□□□□□ -0.18
CLN6-223	ENST00000637823	USP5	P45974	858 aa		13.95	□□□□□ -0.18
CLN6-223	ENST00000637823	CRK	P46108	304 aa		13.95	□□□□□ -0.18
CLN6-223	ENST00000637823	SCNN1D	P51172	638 aa		13.95	□□□□□ -0.18
CLN6-223	ENST00000637823	EXOSC10	Q01780	885 aa	Known RBP	13.95	□□□□□ -0.18
CLN6-223	ENST00000637823	TRDN	Q13061	729 aa		13.95	□□□□□ -0.18
CLN6-223	ENST00000637823	TNIP1	Q15025	636 aa		13.95	□□□□□ -0.18
CLN6-223	ENST00000637823	ANKRD1	Q15327	319 aa		13.95	□□□□□ -0.18
CLN6-223	ENST00000637823	CTR9	Q6PD62	1173 aa		13.95	□□□□□ -0.18
CLN6-223	ENST00000637823	KIAA0825	Q8IV33	1275 aa		13.95	□□□□□ -0.18
CLN6-223	ENST00000637823	TEX11	Q8IYF3	940 aa		13.95	□□□□□ -0.18
CLN6-223	ENST00000637823	NCOA7	Q8NI08	942 aa		13.95	□□□□□ -0.18
CLN6-223	ENST00000637823	ZDHHC15	Q96MV8	337 aa		13.95	□□□□□ -0.18
CLN6-223	ENST00000637823	NBPF3	Q9H094	633 aa		13.95	□□□□□ -0.18
CLN6-223	ENST00000637823	SERPINA10	Q9UK55	444 aa		13.95	□□□□□ -0.18
CLN6-223	ENST00000637823	TIAM2	Q8IVF5	1701 aa		13.95	□□□□□ -0.18
CLN6-223	ENST00000637823	MINDY4B	A8MYZ0	360 aa		13.94	□□□□□ -0.18
CLN6-223	ENST00000637823	MMP14	P50281	582 aa		13.94	□□□□□ -0.18
CLN6-223	ENST00000637823	AK2	P54819	239 aa		13.94	□□□□□ -0.18
CLN6-223	ENST00000637823	RHBDL3	P58872	404 aa		13.94	□□□□□ -0.18
CLN6-223	ENST00000637823	CXCL9	Q07325	125 aa		13.94	□□□□□ -0.18
CLN6-223	ENST00000637823	PPARA	Q07869	468 aa		13.94	□□□□□ -0.18
CLN6-223	ENST00000637823	AKNAD1	Q5T1N1	836 aa		13.94	□□□□□ -0.18
CLN6-223	ENST00000637823	MFSD6	Q6ZSS7	791 aa		13.94	□□□□□ -0.18
CLN6-223	ENST00000637823	ARHGAP27	Q6ZUM4	889 aa		13.94	□□□□□ -0.18
CLN6-223	ENST00000637823	AGBL3	Q8NEM8	1001 aa		13.94	□□□□□ -0.18
CLN6-223	ENST00000637823	GML	Q99445	158 aa		13.94	□□□□□ -0.18
CLN6-223	ENST00000637823	RNF41	Q9H4P4	317 aa	Predicted RBP	13.94	□□□□□ -0.18
CLN6-223	ENST00000637823	CNNM2	Q9H8M5	875 aa		13.94	□□□□□ -0.18
CLN6-223	ENST00000637823	MKRN1	Q9UHC7	482 aa	Known RBP	13.94	□□□□□ -0.18
CLN6-223	ENST00000637823	LIMCH1	Q9UPQ0	1083 aa		13.94	□□□□□ -0.18
CLN6-223	ENST00000637823	ADAMTSL1	Q8N6G6	1762 aa		13.94	□□□□□ -0.18
CLN6-223	ENST00000637823	WDR19	Q8NEZ3	1342 aa		13.93	□□□□□ -0.18

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