RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 SLF2Q8IX21 1173 aa21.9■■□□□ 1.1
CLN3-254ENST00000637050 ALDH8A1Q9H2A2 487 aaPredicted RBP21.9■■□□□ 1.1
CLN3-254ENST00000637050 PDRG1Q9NUG6 133 aa21.9■■□□□ 1.1
CLN3-254ENST00000637050 SCN9AQ15858 1988 aa21.9■■□□□ 1.1
CLN3-254ENST00000637050 GAKO14976 1311 aa21.89■■□□□ 1.1
CLN3-254ENST00000637050 HMGB1P09429 215 aaKnown RBP21.89■■□□□ 1.1
CLN3-254ENST00000637050 GIMAP6Q6P9H5 292 aa21.89■■□□□ 1.1
CLN3-254ENST00000637050 SDR42E1Q8WUS8 393 aa21.89■■□□□ 1.1
CLN3-254ENST00000637050 CRNKL1Q9BZJ0 848 aaKnown RBP21.89■■□□□ 1.1
CLN3-254ENST00000637050 NBPF3Q9H094 633 aa21.89■■□□□ 1.1
CLN3-254ENST00000637050 MYH2Q9UKX2 1941 aa21.89■■□□□ 1.09
CLN3-254ENST00000637050 FER1L6Q2WGJ9 1857 aa21.88■■□□□ 1.09
CLN3-254ENST00000637050 BAG3O95817 575 aa21.88■■□□□ 1.09
CLN3-254ENST00000637050 AK2P54819 239 aa21.88■■□□□ 1.09
CLN3-254ENST00000637050 DACT2Q5SW24 774 aa21.88■■□□□ 1.09
CLN3-254ENST00000637050 CERS3Q8IU89 383 aa21.88■■□□□ 1.09
CLN3-254ENST00000637050 ZNF277Q9NRM2 450 aaPredicted RBP21.88■■□□□ 1.09
CLN3-254ENST00000637050 GPR75-ASB3A0A0A6YYF3 556 aa21.88■■□□□ 1.09
CLN3-254ENST00000637050 USP17L3A6NCW0 530 aa21.88■■□□□ 1.09
CLN3-254ENST00000637050 USP17L4A6NCW7 530 aa21.88■■□□□ 1.09
CLN3-254ENST00000637050 TDO2P48775 406 aa21.88■■□□□ 1.09
CLN3-254ENST00000637050 USP17L1Q7RTZ2 530 aa21.88■■□□□ 1.09
CLN3-254ENST00000637050 NLGN2Q8NFZ4 835 aa21.88■■□□□ 1.09
CLN3-254ENST00000637050 MXD3Q9BW11 206 aa21.88■■□□□ 1.09
CLN3-254ENST00000637050 YDJCA8MPS7 323 aa21.87■■□□□ 1.09
CLN3-254ENST00000637050 NOL10Q9BSC4 688 aaKnown RBP21.87■■□□□ 1.09
CLN3-254ENST00000637050 ATP8A2Q9NTI2 1148 aa21.87■■□□□ 1.09
CLN3-254ENST00000637050 TIAM2Q8IVF5 1701 aa21.86■■□□□ 1.09
CLN3-254ENST00000637050 TBC1D10CQ8IV04 446 aa21.86■■□□□ 1.09
CLN3-254ENST00000637050 LARGE2Q8N3Y3 721 aa21.86■■□□□ 1.09
CLN3-254ENST00000637050 TMX3Q96JJ7 454 aa21.86■■□□□ 1.09
CLN3-254ENST00000637050 TTF2Q9UNY4 1162 aaKnown RBP21.86■■□□□ 1.09
CLN3-254ENST00000637050 BCS1LQ9Y276 419 aa21.86■■□□□ 1.09
CLN3-254ENST00000637050 COL4A5P29400 1685 aa21.86■■□□□ 1.09
CLN3-254ENST00000637050 BTDP43251 543 aa21.85■■□□□ 1.09
CLN3-254ENST00000637050 DHX32Q7L7V1 743 aaKnown RBP21.85■■□□□ 1.09
CLN3-254ENST00000637050 PSME4Q14997 1843 aa21.85■■□□□ 1.09
CLN3-254ENST00000637050 IARSP41252 1262 aaKnown RBP21.85■■□□□ 1.09
CLN3-254ENST00000637050 EXOSC10Q01780 885 aaKnown RBP21.85■■□□□ 1.09
CLN3-254ENST00000637050 SH3RF3Q8TEJ3 882 aaPredicted RBP21.85■■□□□ 1.09
CLN3-254ENST00000637050 TAOK3Q9H2K8 898 aa21.85■■□□□ 1.09
CLN3-254ENST00000637050 DCP1AQ9NPI6 582 aaPredicted RBP21.85■■□□□ 1.09
CLN3-254ENST00000637050 LIMCH1Q9UPQ0 1083 aa21.85■■□□□ 1.09
CLN3-254ENST00000637050 DAGLAQ9Y4D2 1042 aa21.85■■□□□ 1.09
CLN3-254ENST00000637050 PLCG2P16885 1265 aa21.84■■□□□ 1.09
CLN3-254ENST00000637050 NOL8Q76FK4 1167 aaKnown RBP21.84■■□□□ 1.09
CLN3-254ENST00000637050 SPRYD3Q8NCJ5 442 aa21.84■■□□□ 1.09
CLN3-254ENST00000637050 NCOA7Q8NI08 942 aa21.84■■□□□ 1.09
CLN3-254ENST00000637050 TCEANC2Q96MN5 208 aa21.84■■□□□ 1.09
CLN3-254ENST00000637050 MRIQ9BWK5 157 aa21.84■■□□□ 1.09
CLN3-254ENST00000637050 ANAPC4Q9UJX5 808 aa21.84■■□□□ 1.09
CLN3-254ENST00000637050 ARFGEF1Q9Y6D6 1849 aa21.84■■□□□ 1.09
CLN3-254ENST00000637050 F8W031 263 aaPredicted RBP21.83■■□□□ 1.09
CLN3-254ENST00000637050 NFKBIEO00221 500 aa21.83■■□□□ 1.09
CLN3-254ENST00000637050 PPARAQ07869 468 aa21.83■■□□□ 1.09
CLN3-254ENST00000637050 ANKRD1Q15327 319 aa21.83■■□□□ 1.09
CLN3-254ENST00000637050 HHIPL2Q6UWX4 724 aa21.83■■□□□ 1.09
CLN3-254ENST00000637050 MB21D2Q8IYB1 491 aaPredicted RBP21.83■■□□□ 1.09
CLN3-254ENST00000637050 MKRN1Q9UHC7 482 aaKnown RBP21.83■■□□□ 1.09
CLN3-254ENST00000637050 LTBP3Q9NS15 1303 aa21.83■■□□□ 1.08
CLN3-254ENST00000637050 RHBDL3P58872 404 aa21.82■■□□□ 1.08
CLN3-254ENST00000637050 CTDSPL2Q05D32 466 aa21.82■■□□□ 1.08
CLN3-254ENST00000637050 CUL4AQ13619 759 aa21.82■■□□□ 1.08
CLN3-254ENST00000637050 TOB2Q14106 344 aaPredicted RBP21.82■■□□□ 1.08
CLN3-254ENST00000637050 CTR9Q6PD62 1173 aa21.82■■□□□ 1.08
CLN3-254ENST00000637050 HSP90AA1P07900 732 aaKnown RBP21.82■■□□□ 1.08
CLN3-254ENST00000637050 HDLBPQ00341 1268 aaKnown RBP21.82■■□□□ 1.08
CLN3-254ENST00000637050 AKNAD1Q5T1N1 836 aa21.82■■□□□ 1.08
CLN3-254ENST00000637050 STAG1Q8WVM7 1258 aa21.82■■□□□ 1.08
CLN3-254ENST00000637050 BAZ2AQ9UIF9 1905 aaKnown RBP21.81■■□□□ 1.08
CLN3-254ENST00000637050 TRDNQ13061 729 aa21.81■■□□□ 1.08
CLN3-254ENST00000637050 SBK1Q52WX2 424 aa21.81■■□□□ 1.08
CLN3-254ENST00000637050 RALYLQ86SE5 291 aaKnown RBP21.81■■□□□ 1.08
CLN3-254ENST00000637050 NIM1KQ8IY84 436 aa21.81■■□□□ 1.08
CLN3-254ENST00000637050 FBXL16Q8N461 479 aa21.81■■□□□ 1.08
CLN3-254ENST00000637050 TEKT1Q969V4 418 aa21.81■■□□□ 1.08
CLN3-254ENST00000637050 ZSCAN31Q96LW9 406 aaPredicted RBP21.81■■□□□ 1.08
CLN3-254ENST00000637050 AGXT2Q9BYV1 514 aa21.81■■□□□ 1.08
CLN3-254ENST00000637050 SLKQ9H2G2 1235 aaPredicted RBP21.81■■□□□ 1.08
CLN3-254ENST00000637050 ZNRF3Q9ULT6 936 aa21.81■■□□□ 1.08
CLN3-254ENST00000637050 TACC3Q9Y6A5 838 aa21.81■■□□□ 1.08
CLN3-254ENST00000637050 WDR19Q8NEZ3 1342 aa21.81■■□□□ 1.08
CLN3-254ENST00000637050 USP17L12C9JPN9 530 aa21.8■■□□□ 1.08
CLN3-254ENST00000637050 USP17L21D6R901 530 aa21.8■■□□□ 1.08
CLN3-254ENST00000637050 USP5P45974 858 aa21.8■■□□□ 1.08
CLN3-254ENST00000637050 SCNN1DP51172 638 aa21.8■■□□□ 1.08
CLN3-254ENST00000637050 Q6ZUG5 572 aa21.8■■□□□ 1.08
CLN3-254ENST00000637050 KIAA0825Q8IV33 1275 aa21.8■■□□□ 1.08
CLN3-254ENST00000637050 LARP6Q9BRS8 491 aaKnown RBP21.8■■□□□ 1.08
CLN3-254ENST00000637050 FHDC1Q9C0D6 1143 aaPredicted RBP21.8■■□□□ 1.08
CLN3-254ENST00000637050 ARPP21Q9UBL0 812 aaPredicted RBP21.8■■□□□ 1.08
CLN3-254ENST00000637050 NEDD4P46934 1319 aa21.8■■□□□ 1.08
CLN3-254ENST00000637050 MINDY4BA8MYZ0 360 aa21.79■■□□□ 1.08
CLN3-254ENST00000637050 VIL1P09327 827 aaKnown RBP21.79■■□□□ 1.08
CLN3-254ENST00000637050 MCM5P33992 734 aa21.79■■□□□ 1.08
CLN3-254ENST00000637050 DDIT3P35638 169 aa21.79■■□□□ 1.08
CLN3-254ENST00000637050 CNNM2Q9H8M5 875 aa21.79■■□□□ 1.08
CLN3-254ENST00000637050 TPCN1Q9ULQ1 816 aa21.79■■□□□ 1.08
CLN3-254ENST00000637050 CDK5RAP2Q96SN8 1893 aa21.79■■□□□ 1.08
CLN3-254ENST00000637050 MYO3BQ8WXR4 1341 aa21.79■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms