RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 ORC1Q13415 861 aa6.15□□□□□ -1.42
SCN1A-208ENST00000625916 PLCL1Q15111 1095 aa6.15□□□□□ -1.42
SCN1A-208ENST00000625916 CYP27C1Q4G0S4 372 aa6.15□□□□□ -1.42
SCN1A-208ENST00000625916 SEZ6L2Q6UXD5 910 aa6.15□□□□□ -1.42
SCN1A-208ENST00000625916 WDR18Q9BV38 432 aa6.15□□□□□ -1.42
SCN1A-208ENST00000625916 GSX1Q9H4S2 264 aaPredicted RBP6.15□□□□□ -1.42
SCN1A-208ENST00000625916 PIDD1Q9HB75 910 aa6.15□□□□□ -1.42
SCN1A-208ENST00000625916 C1GALT1Q9NS00 363 aa6.15□□□□□ -1.42
SCN1A-208ENST00000625916 SERPINB4P48594 390 aa6.14□□□□□ -1.43
SCN1A-208ENST00000625916 ZNF574Q6ZN55 896 aaPredicted RBP6.14□□□□□ -1.43
SCN1A-208ENST00000625916 STK11IPQ8N1F8 1099 aa6.14□□□□□ -1.43
SCN1A-208ENST00000625916 BCL7CQ8WUZ0 217 aaPredicted RBP6.14□□□□□ -1.43
SCN1A-208ENST00000625916 ZC3H12CQ9C0D7 883 aaKnown RBP6.14□□□□□ -1.43
SCN1A-208ENST00000625916 PPP1R9AQ9ULJ8 1098 aa6.14□□□□□ -1.43
SCN1A-208ENST00000625916 GADD45BO75293 160 aaPredicted RBP6.13□□□□□ -1.43
SCN1A-208ENST00000625916 LIG1P18858 919 aa6.13□□□□□ -1.43
SCN1A-208ENST00000625916 ZNF157P51786 506 aaPredicted RBP6.13□□□□□ -1.43
SCN1A-208ENST00000625916 HNRNPUQ00839 825 aaKnown RBP eCLIP6.13□□□□□ -1.43
SCN1A-208ENST00000625916 PTPN12Q05209 780 aaKnown RBP6.13□□□□□ -1.43
SCN1A-208ENST00000625916 POU5F2Q8N7G0 328 aa6.13□□□□□ -1.43
SCN1A-208ENST00000625916 TMC1Q8TDI8 760 aa6.13□□□□□ -1.43
SCN1A-208ENST00000625916 TMPRSS2O15393 492 aa6.12□□□□□ -1.43
SCN1A-208ENST00000625916 C8AP07357 584 aa6.12□□□□□ -1.43
SCN1A-208ENST00000625916 SLFN14P0C7P3 912 aa6.12□□□□□ -1.43
SCN1A-208ENST00000625916 FAM87AP0C7U9 286 aa6.12□□□□□ -1.43
SCN1A-208ENST00000625916 SYNGAP1Q96PV0 1343 aa6.12□□□□□ -1.43
SCN1A-208ENST00000625916 ATXN3LQ9H3M9 355 aa6.12□□□□□ -1.43
SCN1A-208ENST00000625916 ABCB6Q9NP58 842 aa6.12□□□□□ -1.43
SCN1A-208ENST00000625916 TMEM238LA0A1B0GVL6 79 aa6.11□□□□□ -1.43
SCN1A-208ENST00000625916 BIN1O00499 593 aa6.11□□□□□ -1.43
SCN1A-208ENST00000625916 ID3Q02535 119 aa6.11□□□□□ -1.43
SCN1A-208ENST00000625916 BNIP3Q12983 259 aa6.11□□□□□ -1.43
SCN1A-208ENST00000625916 CDK5R2Q13319 367 aa6.11□□□□□ -1.43
SCN1A-208ENST00000625916 ZNF792Q3KQV3 632 aa6.11□□□□□ -1.43
SCN1A-208ENST00000625916 RPS26P11Q5JNZ5 115 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-208ENST00000625916 SPRED2Q7Z698 418 aa6.11□□□□□ -1.43
SCN1A-208ENST00000625916 CCDC74AQ96AQ1 378 aa6.11□□□□□ -1.43
SCN1A-208ENST00000625916 MISP3Q96FF7 219 aa6.11□□□□□ -1.43
SCN1A-208ENST00000625916 WDR89Q96FK6 387 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-208ENST00000625916 FAM129BQ96TA1 746 aa6.11□□□□□ -1.43
SCN1A-208ENST00000625916 CCDC86Q9H6F5 360 aaKnown RBP6.11□□□□□ -1.43
SCN1A-208ENST00000625916 CRIM1Q9NZV1 1036 aa6.11□□□□□ -1.43
SCN1A-208ENST00000625916 TRAK1Q9UPV9 953 aa6.11□□□□□ -1.43
SCN1A-208ENST00000625916 USTQ9Y2C2 406 aa6.11□□□□□ -1.43
SCN1A-208ENST00000625916 ARID1BQ8NFD5 2236 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-208ENST00000625916 EIF1AYO14602 144 aaKnown RBP6.1□□□□□ -1.43
SCN1A-208ENST00000625916 RNGTTO60942 597 aaKnown RBP6.1□□□□□ -1.43
SCN1A-208ENST00000625916 PAPLNO95428 1278 aa6.1□□□□□ -1.43
SCN1A-208ENST00000625916 JAG1P78504 1218 aa6.1□□□□□ -1.43
SCN1A-208ENST00000625916 ARHGAP4P98171 946 aa6.1□□□□□ -1.43
SCN1A-208ENST00000625916 ECM1Q16610 540 aa6.1□□□□□ -1.43
SCN1A-208ENST00000625916 PRPF40BQ6NWY9 871 aaKnown RBP6.1□□□□□ -1.43
SCN1A-208ENST00000625916 ARHGAP27Q6ZUM4 889 aa6.1□□□□□ -1.43
SCN1A-208ENST00000625916 SMYD4Q8IYR2 804 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-208ENST00000625916 PLD6Q8N2A8 252 aaKnown RBP6.1□□□□□ -1.43
SCN1A-208ENST00000625916 FAM181AQ8N9Y4 354 aa6.1□□□□□ -1.43
SCN1A-208ENST00000625916 NETO1Q8TDF5 533 aa6.1□□□□□ -1.43
SCN1A-208ENST00000625916 FANCD2OSQ96PS1 177 aa6.1□□□□□ -1.43
SCN1A-208ENST00000625916 NIF3L1Q9GZT8 377 aa6.1□□□□□ -1.43
SCN1A-208ENST00000625916 DNAJC25Q9H1X3 360 aa6.1□□□□□ -1.43
SCN1A-208ENST00000625916 C1orf115Q9H7X2 142 aa6.1□□□□□ -1.43
SCN1A-208ENST00000625916 FAAP100Q0VG06 881 aa6.09□□□□□ -1.43
SCN1A-208ENST00000625916 DTHD1Q6ZMT9 781 aa6.09□□□□□ -1.43
SCN1A-208ENST00000625916 CITED4Q96RK1 184 aa6.09□□□□□ -1.43
SCN1A-208ENST00000625916 GPN3Q9UHW5 284 aaPredicted RBP6.09□□□□□ -1.43
SCN1A-208ENST00000625916 GTF3C3Q9Y5Q9 886 aa6.09□□□□□ -1.43
SCN1A-208ENST00000625916 ZNF862O60290 1169 aa6.08□□□□□ -1.44
SCN1A-208ENST00000625916 GSTP1P09211 210 aaKnown RBP6.08□□□□□ -1.44
SCN1A-208ENST00000625916 HCLS1P14317 486 aaPredicted RBP6.08□□□□□ -1.44
SCN1A-208ENST00000625916 PPP2R3AQ06190 1150 aa6.08□□□□□ -1.44
SCN1A-208ENST00000625916 GRM2Q14416 872 aa6.08□□□□□ -1.44
SCN1A-208ENST00000625916 WFDC3Q8IUB2 231 aa6.08□□□□□ -1.44
SCN1A-208ENST00000625916 KCNB2Q92953 911 aa6.08□□□□□ -1.44
SCN1A-208ENST00000625916 RC3H2Q9HBD1 1191 aaKnown RBP6.08□□□□□ -1.44
SCN1A-208ENST00000625916 DISC1Q9NRI5 854 aa6.08□□□□□ -1.44
SCN1A-208ENST00000625916 KRT82Q9NSB4 513 aa6.08□□□□□ -1.44
SCN1A-208ENST00000625916 GPR182O15218 404 aa6.07□□□□□ -1.44
SCN1A-208ENST00000625916 CD8BP10966 210 aa6.07□□□□□ -1.44
SCN1A-208ENST00000625916 TTLL4Q14679 1199 aa6.07□□□□□ -1.44
SCN1A-208ENST00000625916 KIF4BQ2VIQ3 1234 aa6.07□□□□□ -1.44
SCN1A-208ENST00000625916 ZNF648Q5T619 568 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-208ENST00000625916 EPS8L3Q8TE67 593 aaKnown RBP6.07□□□□□ -1.44
SCN1A-208ENST00000625916 SSU72Q9NP77 194 aaKnown RBP6.07□□□□□ -1.44
SCN1A-208ENST00000625916 PPP4R2Q9NY27 417 aa6.07□□□□□ -1.44
SCN1A-208ENST00000625916 VAV3Q9UKW4 847 aa6.07□□□□□ -1.44
SCN1A-208ENST00000625916 LEFTY1O75610 366 aa6.06□□□□□ -1.44
SCN1A-208ENST00000625916 FUT4P22083 530 aa6.06□□□□□ -1.44
SCN1A-208ENST00000625916 FCGRTP55899 365 aa6.06□□□□□ -1.44
SCN1A-208ENST00000625916 IFI16Q16666 785 aaKnown RBP6.06□□□□□ -1.44
SCN1A-208ENST00000625916 GLIS3Q8NEA6 775 aa6.06□□□□□ -1.44
SCN1A-208ENST00000625916 PI4K2BQ8TCG2 481 aa6.06□□□□□ -1.44
SCN1A-208ENST00000625916 CSRNP1Q96S65 589 aa6.06□□□□□ -1.44
SCN1A-208ENST00000625916 TMEM39AQ9NV64 488 aa6.06□□□□□ -1.44
SCN1A-208ENST00000625916 PCOLCE2Q9UKZ9 415 aa6.06□□□□□ -1.44
SCN1A-208ENST00000625916 CD96P40200 585 aa6.05□□□□□ -1.44
SCN1A-208ENST00000625916 PRKCQQ04759 706 aa6.05□□□□□ -1.44
SCN1A-208ENST00000625916 AOC3Q16853 763 aa6.05□□□□□ -1.44
SCN1A-208ENST00000625916 ATG4DQ86TL0 474 aaPredicted RBP6.05□□□□□ -1.44
SCN1A-208ENST00000625916 FAM168AQ92567 244 aa6.05□□□□□ -1.44
SCN1A-208ENST00000625916 HRASLS5Q96KN8 279 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms