RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 TC2NQ8N9U0 490 aa16.21■□□□□ 0.19
LDB3-209ENST00000623056 C19orf44Q9H6X5 657 aa16.21■□□□□ 0.19
LDB3-209ENST00000623056 ATG3Q9NT62 314 aa16.21■□□□□ 0.19
LDB3-209ENST00000623056 UBE3BQ7Z3V4 1068 aa16.2■□□□□ 0.18
LDB3-209ENST00000623056 SRLQ86TD4 932 aa16.2■□□□□ 0.18
LDB3-209ENST00000623056 ACTN2P35609 894 aa16.2■□□□□ 0.18
LDB3-209ENST00000623056 ADKP55263 362 aaKnown RBP16.2■□□□□ 0.18
LDB3-209ENST00000623056 PDE4BQ07343 736 aa16.2■□□□□ 0.18
LDB3-209ENST00000623056 KARSQ15046 597 aaKnown RBP16.2■□□□□ 0.18
LDB3-209ENST00000623056 HSP90AA4PQ58FG1 418 aa16.2■□□□□ 0.18
LDB3-209ENST00000623056 IQUBQ8NA54 791 aa16.2■□□□□ 0.18
LDB3-209ENST00000623056 CCDC12Q8WUD4 166 aaPredicted RBP16.2■□□□□ 0.18
LDB3-209ENST00000623056 NEUROD6Q96NK8 337 aa16.2■□□□□ 0.18
LDB3-209ENST00000623056 DESI2Q9BSY9 194 aa16.2■□□□□ 0.18
LDB3-209ENST00000623056 M0R2C6 588 aa16.19■□□□□ 0.18
LDB3-209ENST00000623056 CPLX1O14810 134 aa16.19■□□□□ 0.18
LDB3-209ENST00000623056 CDC27P30260 824 aa16.19■□□□□ 0.18
LDB3-209ENST00000623056 METTL16Q86W50 562 aaKnown RBP16.19■□□□□ 0.18
LDB3-209ENST00000623056 EFCC1Q9HA90 598 aa16.19■□□□□ 0.18
LDB3-209ENST00000623056 RRP15Q9Y3B9 282 aaKnown RBP16.19■□□□□ 0.18
LDB3-209ENST00000623056 SIPA1L3O60292 1781 aaPredicted RBP16.19■□□□□ 0.18
LDB3-209ENST00000623056 RNF113AO15541 343 aaKnown RBP16.19■□□□□ 0.18
LDB3-209ENST00000623056 PRC1O43663 620 aa16.19■□□□□ 0.18
LDB3-209ENST00000623056 FOXP4Q8IVH2 680 aaPredicted RBP16.19■□□□□ 0.18
LDB3-209ENST00000623056 ZSWIM4Q9H7M6 989 aa16.19■□□□□ 0.18
LDB3-209ENST00000623056 TMEM94Q12767 1356 aa16.19■□□□□ 0.18
LDB3-209ENST00000623056 FAM237AA0A1B0GTK4 181 aa16.18■□□□□ 0.18
LDB3-209ENST00000623056 PPP6R2O75170 966 aa16.18■□□□□ 0.18
LDB3-209ENST00000623056 BMP6P22004 513 aa16.18■□□□□ 0.18
LDB3-209ENST00000623056 CHMP4BP1P59074 171 aa16.18■□□□□ 0.18
LDB3-209ENST00000623056 HAND2P61296 217 aa16.18■□□□□ 0.18
LDB3-209ENST00000623056 RESP18Q5W5W9 173 aa16.18■□□□□ 0.18
LDB3-209ENST00000623056 SPECC1LQ69YQ0 1117 aa16.18■□□□□ 0.18
LDB3-209ENST00000623056 ANKRD24Q8TF21 1146 aa16.18■□□□□ 0.18
LDB3-209ENST00000623056 PCDHA5Q9Y5H7 936 aa16.18■□□□□ 0.18
LDB3-209ENST00000623056 STRCP1A6NGW2 1772 aa16.18■□□□□ 0.18
LDB3-209ENST00000623056 PTPAQ15257 358 aa16.18■□□□□ 0.18
LDB3-209ENST00000623056 LONRF3Q496Y0 759 aa16.18■□□□□ 0.18
LDB3-209ENST00000623056 ANKRD13DQ6ZTN6 518 aa16.18■□□□□ 0.18
LDB3-209ENST00000623056 JMYQ8N9B5 988 aa16.18■□□□□ 0.18
LDB3-209ENST00000623056 CLIC6Q96NY7 704 aa16.18■□□□□ 0.18
LDB3-209ENST00000623056 MRPL44Q9H9J2 332 aaKnown RBP16.18■□□□□ 0.18
LDB3-209ENST00000623056 PDE11AQ9HCR9 933 aa16.18■□□□□ 0.18
LDB3-209ENST00000623056 VPS18Q9P253 973 aa16.18■□□□□ 0.18
LDB3-209ENST00000623056 STRCQ7RTU9 1775 aa16.17■□□□□ 0.18
LDB3-209ENST00000623056 TIMM10P62072 90 aa16.17■□□□□ 0.18
LDB3-209ENST00000623056 SLC39A6Q13433 755 aa16.17■□□□□ 0.18
LDB3-209ENST00000623056 BEND6Q5SZJ8 279 aaPredicted RBP16.17■□□□□ 0.18
LDB3-209ENST00000623056 SRGAP1Q7Z6B7 1085 aa16.17■□□□□ 0.18
LDB3-209ENST00000623056 TICAM2Q86XR7 235 aa16.17■□□□□ 0.18
LDB3-209ENST00000623056 HNRNPLLQ8WVV9 542 aaKnown RBP16.17■□□□□ 0.18
LDB3-209ENST00000623056 DDX17Q92841 729 aaKnown RBP16.17■□□□□ 0.18
LDB3-209ENST00000623056 IRX2Q9BZI1 471 aaPredicted RBP16.17■□□□□ 0.18
LDB3-209ENST00000623056 ANKZF1Q9H8Y5 726 aa16.17■□□□□ 0.18
LDB3-209ENST00000623056 C5P01031 1676 aa16.17■□□□□ 0.18
LDB3-209ENST00000623056 CUTAO60888 179 aa16.17■□□□□ 0.18
LDB3-209ENST00000623056 MCM6Q14566 821 aa16.17■□□□□ 0.18
LDB3-209ENST00000623056 MB21D2Q8IYB1 491 aaPredicted RBP16.17■□□□□ 0.18
LDB3-209ENST00000623056 AIFM3Q96NN9 605 aa16.17■□□□□ 0.18
LDB3-209ENST00000623056 C1orf167Q5SNV9 1468 aa16.16■□□□□ 0.18
LDB3-209ENST00000623056 NOP2P46087 812 aaKnown RBP16.16■□□□□ 0.18
LDB3-209ENST00000623056 ANTXR2P58335 489 aa16.16■□□□□ 0.18
LDB3-209ENST00000623056 MTF1Q14872 753 aa16.16■□□□□ 0.18
LDB3-209ENST00000623056 CCDC102BQ68D86 513 aa16.16■□□□□ 0.18
LDB3-209ENST00000623056 LEKR1Q6ZMV7 388 aa16.16■□□□□ 0.18
LDB3-209ENST00000623056 VPS37DQ86XT2 251 aa16.16■□□□□ 0.18
LDB3-209ENST00000623056 OSBP2Q969R2 916 aa16.16■□□□□ 0.18
LDB3-209ENST00000623056 NWD2Q9ULI1 1742 aa16.16■□□□□ 0.18
LDB3-209ENST00000623056 A0A087WZG4 1122 aa16.16■□□□□ 0.18
LDB3-209ENST00000623056 ATP5J2-PTCD1G3V325 749 aa16.16■□□□□ 0.18
LDB3-209ENST00000623056 FOXP2O15409 715 aa16.16■□□□□ 0.18
LDB3-209ENST00000623056 PTCD1O75127 700 aaKnown RBP16.16■□□□□ 0.18
LDB3-209ENST00000623056 ZNF18P17022 549 aa16.16■□□□□ 0.18
LDB3-209ENST00000623056 IMMTQ16891 758 aaKnown RBP16.16■□□□□ 0.18
LDB3-209ENST00000623056 ZNF790Q6PG37 636 aa16.16■□□□□ 0.18
LDB3-209ENST00000623056 LMBR1LQ6UX01 489 aa16.16■□□□□ 0.18
LDB3-209ENST00000623056 HDXQ7Z353 690 aa16.16■□□□□ 0.18
LDB3-209ENST00000623056 ATG9AQ7Z3C6 839 aa16.16■□□□□ 0.18
LDB3-209ENST00000623056 CNNM3Q8NE01 707 aa16.16■□□□□ 0.18
LDB3-209ENST00000623056 ZFP91Q96JP5 570 aaPredicted RBP16.16■□□□□ 0.18
LDB3-209ENST00000623056 MAP3K14Q99558 947 aa16.16■□□□□ 0.18
LDB3-209ENST00000623056 PUF60Q9UHX1 559 aaKnown RBP16.16■□□□□ 0.18
LDB3-209ENST00000623056 FOXN1O15353 648 aa16.15■□□□□ 0.18
LDB3-209ENST00000623056 IVLP07476 585 aa16.15■□□□□ 0.18
LDB3-209ENST00000623056 IFIT1P09914 478 aaKnown RBP16.15■□□□□ 0.18
LDB3-209ENST00000623056 USP5P45974 858 aa16.15■□□□□ 0.18
LDB3-209ENST00000623056 RAB21Q9UL25 225 aa16.15■□□□□ 0.18
LDB3-209ENST00000623056 KCNH3Q9ULD8 1083 aa16.15■□□□□ 0.18
LDB3-209ENST00000623056 NFE2L3Q9Y4A8 694 aa16.15■□□□□ 0.18
LDB3-209ENST00000623056 AFDNP55196 1824 aaKnown RBP16.15■□□□□ 0.18
LDB3-209ENST00000623056 PLEKHG2Q9H7P9 1386 aa16.15■□□□□ 0.18
LDB3-209ENST00000623056 CCDC175P0C221 793 aa16.14■□□□□ 0.18
LDB3-209ENST00000623056 PIP4K2AP48426 406 aaPredicted RBP16.14■□□□□ 0.18
LDB3-209ENST00000623056 FMR1Q06787 632 aaKnown RBP eCLIP16.14■□□□□ 0.18
LDB3-209ENST00000623056 KRT28Q7Z3Y7 464 aa16.14■□□□□ 0.18
LDB3-209ENST00000623056 PNKPQ96T60 521 aa16.14■□□□□ 0.18
LDB3-209ENST00000623056 ALG1Q9BT22 464 aa16.14■□□□□ 0.18
LDB3-209ENST00000623056 LZTFL1Q9NQ48 299 aa16.14■□□□□ 0.18
LDB3-209ENST00000623056 C4AP0C0L4 1744 aa16.14■□□□□ 0.17
LDB3-209ENST00000623056 C4BP0C0L5 1744 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms