RNA–Protein interactions for RNA: ENST00000619655.4

MMP28-207, Transcript of matrix metallopeptidase 28, humanhuman

TSL 2

Gene MMP28, Length 2,336 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28-207ENST00000619655 NSUN4Q96CB9 384 aaKnown RBP23.68■■□□□ 1.38
MMP28-207ENST00000619655 RIOK1Q9BRS2 568 aaKnown RBP23.68■■□□□ 1.38
MMP28-207ENST00000619655 TACC3Q9Y6A5 838 aa23.68■■□□□ 1.38
MMP28-207ENST00000619655 EVCP57679 992 aa23.68■■□□□ 1.38
MMP28-207ENST00000619655 GPSM2P81274 684 aa23.68■■□□□ 1.38
MMP28-207ENST00000619655 HMGN5P82970 282 aaKnown RBP23.68■■□□□ 1.38
MMP28-207ENST00000619655 AKNAD1Q5T1N1 836 aa23.68■■□□□ 1.38
MMP28-207ENST00000619655 GRPEL1Q9HAV7 217 aa23.68■■□□□ 1.38
MMP28-207ENST00000619655 LEMD3Q9Y2U8 911 aa23.68■■□□□ 1.38
MMP28-207ENST00000619655 WDR19Q8NEZ3 1342 aa23.68■■□□□ 1.38
MMP28-207ENST00000619655 RXRAP19793 462 aa23.67■■□□□ 1.38
MMP28-207ENST00000619655 COL23A1Q86Y22 540 aaPredicted RBP23.67■■□□□ 1.38
MMP28-207ENST00000619655 TMEM87AQ8NBN3 555 aa23.67■■□□□ 1.38
MMP28-207ENST00000619655 SENP2Q9HC62 589 aa23.67■■□□□ 1.38
MMP28-207ENST00000619655 HPS5Q9UPZ3 1129 aa23.67■■□□□ 1.38
MMP28-207ENST00000619655 GOLGB1Q14789 3259 aaKnown RBP23.67■■□□□ 1.38
MMP28-207ENST00000619655 PLSCR1O15162 318 aa23.67■■□□□ 1.38
MMP28-207ENST00000619655 AATFQ9NY61 560 aaKnown RBP eCLIP23.67■■□□□ 1.38
MMP28-207ENST00000619655 ZSWIM5Q9P217 1185 aa23.67■■□□□ 1.38
MMP28-207ENST00000619655 IRS2Q9Y4H2 1338 aa23.67■■□□□ 1.38
MMP28-207ENST00000619655 SH2B2O14492 632 aaPredicted RBP23.66■■□□□ 1.38
MMP28-207ENST00000619655 UFL1O94874 794 aa23.66■■□□□ 1.38
MMP28-207ENST00000619655 NFXL1Q6ZNB6 911 aa23.66■■□□□ 1.38
MMP28-207ENST00000619655 PANK2Q9BZ23 570 aa23.66■■□□□ 1.38
MMP28-207ENST00000619655 CPLX1O14810 134 aa23.66■■□□□ 1.38
MMP28-207ENST00000619655 MRE11P49959 708 aa23.66■■□□□ 1.38
MMP28-207ENST00000619655 GUCY1B3Q02153 619 aa23.66■■□□□ 1.38
MMP28-207ENST00000619655 SYCE3A1L190 88 aa23.65■■□□□ 1.38
MMP28-207ENST00000619655 SMIM22K7EJ46 135 aa23.65■■□□□ 1.38
MMP28-207ENST00000619655 KRT85P78386 507 aa23.65■■□□□ 1.38
MMP28-207ENST00000619655 PPARAQ07869 468 aa23.65■■□□□ 1.38
MMP28-207ENST00000619655 TMEM67Q5HYA8 995 aa23.65■■□□□ 1.38
MMP28-207ENST00000619655 CCDC144CPQ8IYA2 1237 aa23.65■■□□□ 1.38
MMP28-207ENST00000619655 ZKSCAN3Q9BRR0 538 aa23.65■■□□□ 1.38
MMP28-207ENST00000619655 CNNM2Q9H8M5 875 aa23.65■■□□□ 1.38
MMP28-207ENST00000619655 KIF3AQ9Y496 699 aa23.65■■□□□ 1.38
MMP28-207ENST00000619655 SALL1Q9NSC2 1324 aa23.65■■□□□ 1.38
MMP28-207ENST00000619655 TFIP11Q9UBB9 837 aaKnown RBP23.65■■□□□ 1.38
MMP28-207ENST00000619655 BAZ2AQ9UIF9 1905 aaKnown RBP23.64■■□□□ 1.38
MMP28-207ENST00000619655 CSPP1Q1MSJ5 1256 aa23.64■■□□□ 1.38
MMP28-207ENST00000619655 MICU3Q86XE3 530 aa23.64■■□□□ 1.38
MMP28-207ENST00000619655 DZIP1Q86YF9 867 aaKnown RBP23.64■■□□□ 1.38
MMP28-207ENST00000619655 AKT1S1Q96B36 256 aa23.64■■□□□ 1.38
MMP28-207ENST00000619655 KRT23Q9C075 422 aa23.64■■□□□ 1.38
MMP28-207ENST00000619655 TAOK2Q9UL54 1235 aa23.64■■□□□ 1.38
MMP28-207ENST00000619655 PDS5AQ29RF7 1337 aaKnown RBP23.64■■□□□ 1.38
MMP28-207ENST00000619655 CYP2D7A0A087X1C5 515 aa23.64■■□□□ 1.37
MMP28-207ENST00000619655 IFIT3O14879 490 aaKnown RBP23.64■■□□□ 1.37
MMP28-207ENST00000619655 DHX16O60231 1041 aaKnown RBP23.64■■□□□ 1.37
MMP28-207ENST00000619655 UBE2HP62256 183 aa23.64■■□□□ 1.37
MMP28-207ENST00000619655 ZNF804AQ7Z570 1209 aa23.64■■□□□ 1.37
MMP28-207ENST00000619655 STAG1Q8WVM7 1258 aa23.64■■□□□ 1.37
MMP28-207ENST00000619655 TMEM87BQ96K49 555 aa23.64■■□□□ 1.37
MMP28-207ENST00000619655 MYL10Q9BUA6 226 aa23.64■■□□□ 1.37
MMP28-207ENST00000619655 METAP2P50579 478 aaKnown RBP eCLIP23.63■■□□□ 1.37
MMP28-207ENST00000619655 IGDCC4Q8TDY8 1250 aa23.63■■□□□ 1.37
MMP28-207ENST00000619655 CHMP4CQ96CF2 233 aa23.63■■□□□ 1.37
MMP28-207ENST00000619655 ISY1Q9ULR0 285 aaKnown RBP23.63■■□□□ 1.37
MMP28-207ENST00000619655 TIAM2Q8IVF5 1701 aa23.63■■□□□ 1.37
MMP28-207ENST00000619655 FDPSP14324 419 aaKnown RBP23.62■■□□□ 1.37
MMP28-207ENST00000619655 ZNF445P59923 1031 aa23.62■■□□□ 1.37
MMP28-207ENST00000619655 MSL1Q68DK7 614 aa23.62■■□□□ 1.37
MMP28-207ENST00000619655 LY9Q9HBG7 655 aa23.62■■□□□ 1.37
MMP28-207ENST00000619655 GGA1Q9UJY5 639 aa23.62■■□□□ 1.37
MMP28-207ENST00000619655 NLGN1Q8N2Q7 840 aa23.62■■□□□ 1.37
MMP28-207ENST00000619655 CCDC88AQ3V6T2 1871 aa23.62■■□□□ 1.37
MMP28-207ENST00000619655 HMGB2P26583 209 aaKnown RBP23.61■■□□□ 1.37
MMP28-207ENST00000619655 RESTQ13127 1097 aa23.61■■□□□ 1.37
MMP28-207ENST00000619655 APOA5Q6Q788 366 aa23.61■■□□□ 1.37
MMP28-207ENST00000619655 ADD1P35611 737 aaKnown RBP23.61■■□□□ 1.37
MMP28-207ENST00000619655 TTC6Q86TZ1 520 aa23.61■■□□□ 1.37
MMP28-207ENST00000619655 SYAP1Q96A49 352 aaPredicted RBP23.61■■□□□ 1.37
MMP28-207ENST00000619655 BBOX1O75936 387 aa23.6■■□□□ 1.37
MMP28-207ENST00000619655 RNF41Q9H4P4 317 aaPredicted RBP23.6■■□□□ 1.37
MMP28-207ENST00000619655 ORC3Q9UBD5 711 aaPredicted RBP23.6■■□□□ 1.37
MMP28-207ENST00000619655 CCDC69A6NI79 296 aa23.6■■□□□ 1.37
MMP28-207ENST00000619655 LDHBP07195 334 aaKnown RBP23.6■■□□□ 1.37
MMP28-207ENST00000619655 SPTY2D1Q68D10 685 aaPredicted RBP23.6■■□□□ 1.37
MMP28-207ENST00000619655 TDRD7Q8NHU6 1098 aaKnown RBP23.6■■□□□ 1.37
MMP28-207ENST00000619655 C6orf229H3BNL8 230 aa23.59■■□□□ 1.37
MMP28-207ENST00000619655 ZBTB43O43298 467 aa23.59■■□□□ 1.37
MMP28-207ENST00000619655 OTUD7BQ6GQQ9 843 aa23.59■■□□□ 1.37
MMP28-207ENST00000619655 WDR66Q8TBY9 1149 aa23.59■■□□□ 1.37
MMP28-207ENST00000619655 SPATA32Q96LK8 384 aa23.59■■□□□ 1.37
MMP28-207ENST00000619655 ZSCAN16Q9H4T2 348 aaPredicted RBP23.59■■□□□ 1.37
MMP28-207ENST00000619655 MMP10P09238 476 aa23.59■■□□□ 1.37
MMP28-207ENST00000619655 ATP2B4P23634 1241 aa23.59■■□□□ 1.37
MMP28-207ENST00000619655 HOXA10P31260 410 aaPredicted RBP23.59■■□□□ 1.37
MMP28-207ENST00000619655 CEBPZQ03701 1054 aaKnown RBP23.59■■□□□ 1.37
MMP28-207ENST00000619655 SLC4A8Q2Y0W8 1093 aa23.59■■□□□ 1.37
MMP28-207ENST00000619655 BRIP1Q9BX63 1249 aa23.59■■□□□ 1.37
MMP28-207ENST00000619655 SLC12A7Q9Y666 1083 aa23.59■■□□□ 1.37
MMP28-207ENST00000619655 PPEF1O14829 653 aaPredicted RBP23.58■■□□□ 1.37
MMP28-207ENST00000619655 PRDM1O75626 825 aa23.58■■□□□ 1.37
MMP28-207ENST00000619655 SART3Q15020 963 aaKnown RBP23.58■■□□□ 1.37
MMP28-207ENST00000619655 GRIK5Q16478 980 aa23.58■■□□□ 1.37
MMP28-207ENST00000619655 CRNKL1Q9BZJ0 848 aaKnown RBP23.58■■□□□ 1.37
MMP28-207ENST00000619655 POLLQ9UGP5 575 aa23.58■■□□□ 1.37
MMP28-207ENST00000619655 ERICH2A1L162 156 aa23.58■■□□□ 1.36
MMP28-207ENST00000619655 USP17L12C9JPN9 530 aa23.58■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms