RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 CNTROBQ8N137 903 aa23.87■■□□□ 1.41
UPF3A-211ENST00000618700 MAGEB6Q8N7X4 407 aa23.87■■□□□ 1.41
UPF3A-211ENST00000618700 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.87■■□□□ 1.41
UPF3A-211ENST00000618700 WNT10BO00744 389 aa23.86■■□□□ 1.41
UPF3A-211ENST00000618700 SLC9C2Q5TAH2 1124 aa23.86■■□□□ 1.41
UPF3A-211ENST00000618700 APOBEC3HQ6NTF7 200 aaKnown RBP23.86■■□□□ 1.41
UPF3A-211ENST00000618700 ADGRA1Q86SQ6 560 aa23.86■■□□□ 1.41
UPF3A-211ENST00000618700 FSD1Q9BTV5 496 aa23.86■■□□□ 1.41
UPF3A-211ENST00000618700 ECM29Q5VYK3 1845 aa23.85■■□□□ 1.41
UPF3A-211ENST00000618700 TRIM6-TRIM34B2RNG4 842 aa23.85■■□□□ 1.41
UPF3A-211ENST00000618700 LDHCP07864 332 aa23.85■■□□□ 1.41
UPF3A-211ENST00000618700 RBM26Q5T8P6 1007 aaKnown RBP23.85■■□□□ 1.41
UPF3A-211ENST00000618700 PNMA8AQ86V59 439 aaPredicted RBP23.85■■□□□ 1.41
UPF3A-211ENST00000618700 TICAM2Q86XR7 235 aa23.85■■□□□ 1.41
UPF3A-211ENST00000618700 PRMT6Q96LA8 375 aaPredicted RBP23.85■■□□□ 1.41
UPF3A-211ENST00000618700 AK9Q5TCS8 1911 aa23.84■■□□□ 1.41
UPF3A-211ENST00000618700 CHGBP05060 677 aa23.84■■□□□ 1.41
UPF3A-211ENST00000618700 SDSP20132 328 aa23.84■■□□□ 1.41
UPF3A-211ENST00000618700 CYP7A1P22680 504 aa23.84■■□□□ 1.41
UPF3A-211ENST00000618700 RBM5P52756 815 aaKnown RBP eCLIP23.84■■□□□ 1.41
UPF3A-211ENST00000618700 NBPF9Q3BBW0 867 aa23.84■■□□□ 1.41
UPF3A-211ENST00000618700 ZSCAN25Q6NSZ9 544 aa23.84■■□□□ 1.41
UPF3A-211ENST00000618700 RILPL2Q969X0 211 aa23.84■■□□□ 1.41
UPF3A-211ENST00000618700 ZNF532Q9HCE3 1301 aa23.84■■□□□ 1.41
UPF3A-211ENST00000618700 GPR75-ASB3A0A0A6YYF3 556 aa23.83■■□□□ 1.41
UPF3A-211ENST00000618700 ZFYP08048 801 aaPredicted RBP23.83■■□□□ 1.41
UPF3A-211ENST00000618700 BTDP43251 543 aa23.83■■□□□ 1.41
UPF3A-211ENST00000618700 UBE3CQ15386 1083 aa23.83■■□□□ 1.41
UPF3A-211ENST00000618700 BMP2KLQ5H9B9 411 aa23.83■■□□□ 1.41
UPF3A-211ENST00000618700 LRRFIP1Q32MZ4 808 aaKnown RBP23.82■■□□□ 1.4
UPF3A-211ENST00000618700 SLFNL1Q499Z3 407 aa23.82■■□□□ 1.4
UPF3A-211ENST00000618700 EAPPQ56P03 285 aaPredicted RBP23.82■■□□□ 1.4
UPF3A-211ENST00000618700 ASTN2O75129 1339 aaPredicted RBP23.82■■□□□ 1.4
UPF3A-211ENST00000618700 RNF113AO15541 343 aaKnown RBP23.81■■□□□ 1.4
UPF3A-211ENST00000618700 POTEIP0CG38 1075 aa23.81■■□□□ 1.4
UPF3A-211ENST00000618700 POTEJP0CG39 1038 aa23.81■■□□□ 1.4
UPF3A-211ENST00000618700 ZC3H15Q8WU90 426 aaKnown RBP23.81■■□□□ 1.4
UPF3A-211ENST00000618700 PGAP2Q9UHJ9 254 aa23.81■■□□□ 1.4
UPF3A-211ENST00000618700 TOMM70O94826 608 aa23.8■■□□□ 1.4
UPF3A-211ENST00000618700 RHBDL3P58872 404 aa23.8■■□□□ 1.4
UPF3A-211ENST00000618700 PPP4CP60510 307 aa23.8■■□□□ 1.4
UPF3A-211ENST00000618700 GGA3Q9NZ52 723 aa23.8■■□□□ 1.4
UPF3A-211ENST00000618700 CDC42EP5Q6NZY7 148 aa23.79■■□□□ 1.4
UPF3A-211ENST00000618700 LDHDQ86WU2 507 aa23.79■■□□□ 1.4
UPF3A-211ENST00000618700 APPBP2Q92624 585 aa23.79■■□□□ 1.4
UPF3A-211ENST00000618700 RIOK1Q9BRS2 568 aaKnown RBP23.79■■□□□ 1.4
UPF3A-211ENST00000618700 TDRD3Q9H7E2 651 aaKnown RBP23.79■■□□□ 1.4
UPF3A-211ENST00000618700 PITPNM2Q9BZ72 1349 aa23.79■■□□□ 1.4
UPF3A-211ENST00000618700 MYO1BO43795 1136 aa23.78■■□□□ 1.4
UPF3A-211ENST00000618700 ZMYM1Q5SVZ6 1142 aa23.78■■□□□ 1.4
UPF3A-211ENST00000618700 MIGA1Q8NAN2 632 aa23.78■■□□□ 1.4
UPF3A-211ENST00000618700 OSBP2Q969R2 916 aa23.78■■□□□ 1.4
UPF3A-211ENST00000618700 AATFQ9NY61 560 aaKnown RBP eCLIP23.78■■□□□ 1.4
UPF3A-211ENST00000618700 ZNF70Q9UC06 446 aaPredicted RBP23.78■■□□□ 1.4
UPF3A-211ENST00000618700 CLRN2A0PK11 232 aa23.77■■□□□ 1.4
UPF3A-211ENST00000618700 BAG3O95817 575 aa23.77■■□□□ 1.4
UPF3A-211ENST00000618700 ANGEL2Q5VTE6 544 aaKnown RBP23.77■■□□□ 1.4
UPF3A-211ENST00000618700 CERS3Q8IU89 383 aa23.77■■□□□ 1.4
UPF3A-211ENST00000618700 NOL10Q9BSC4 688 aaKnown RBP23.77■■□□□ 1.4
UPF3A-211ENST00000618700 PUS7LQ9H0K6 701 aaKnown RBP23.77■■□□□ 1.4
UPF3A-211ENST00000618700 PLCG2P16885 1265 aa23.76■■□□□ 1.39
UPF3A-211ENST00000618700 DYNLL1P63167 89 aaKnown RBP23.76■■□□□ 1.39
UPF3A-211ENST00000618700 RBM46Q8TBY0 533 aaKnown RBP23.76■■□□□ 1.39
UPF3A-211ENST00000618700 USP40Q9NVE5 1235 aa23.76■■□□□ 1.39
UPF3A-211ENST00000618700 MAGEB6P1A0A0J9YX57 407 aa23.75■■□□□ 1.39
UPF3A-211ENST00000618700 HIP1O00291 1037 aa23.75■■□□□ 1.39
UPF3A-211ENST00000618700 WDHD1O75717 1129 aaPredicted RBP23.75■■□□□ 1.39
UPF3A-211ENST00000618700 FKBP1CQ5VVH2 108 aa23.75■■□□□ 1.39
UPF3A-211ENST00000618700 SH3RF3Q8TEJ3 882 aaPredicted RBP23.75■■□□□ 1.39
UPF3A-211ENST00000618700 MBD4O95243 580 aa23.74■■□□□ 1.39
UPF3A-211ENST00000618700 CACNB3P54284 484 aa23.74■■□□□ 1.39
UPF3A-211ENST00000618700 APOBEC3FQ8IUX4 373 aaKnown RBP23.74■■□□□ 1.39
UPF3A-211ENST00000618700 LCORLQ8N3X6 602 aa23.74■■□□□ 1.39
UPF3A-211ENST00000618700 FAM227BQ96M60 508 aa23.74■■□□□ 1.39
UPF3A-211ENST00000618700 IDI2Q9BXS1 227 aa23.74■■□□□ 1.39
UPF3A-211ENST00000618700 FOCADQ5VW36 1801 aa23.74■■□□□ 1.39
UPF3A-211ENST00000618700 CDK5RAP2Q96SN8 1893 aa23.74■■□□□ 1.39
UPF3A-211ENST00000618700 A0A0D9SFI3 127 aa23.73■■□□□ 1.39
UPF3A-211ENST00000618700 M0R2C6 588 aa23.73■■□□□ 1.39
UPF3A-211ENST00000618700 NMIQ13287 307 aaPredicted RBP23.73■■□□□ 1.39
UPF3A-211ENST00000618700 TEX11Q8IYF3 940 aa23.73■■□□□ 1.39
UPF3A-211ENST00000618700 SEC62Q99442 399 aaKnown RBP23.73■■□□□ 1.39
UPF3A-211ENST00000618700 VEZTQ9HBM0 779 aa23.73■■□□□ 1.39
UPF3A-211ENST00000618700 HELLSQ9NRZ9 838 aa23.73■■□□□ 1.39
UPF3A-211ENST00000618700 DIAPH3Q9NSV4 1193 aa23.73■■□□□ 1.39
UPF3A-211ENST00000618700 TMOD2Q9NZR1 351 aa23.73■■□□□ 1.39
UPF3A-211ENST00000618700 CHMLP26374 656 aa23.72■■□□□ 1.39
UPF3A-211ENST00000618700 NFIAQ12857 509 aa23.72■■□□□ 1.39
UPF3A-211ENST00000618700 CHADLQ6NUI6 762 aa23.72■■□□□ 1.39
UPF3A-211ENST00000618700 AIDAQ96BJ3 306 aa23.72■■□□□ 1.39
UPF3A-211ENST00000618700 DCPSQ96C86 337 aaKnown RBP23.72■■□□□ 1.39
UPF3A-211ENST00000618700 ARMT1Q9H993 441 aa23.72■■□□□ 1.39
UPF3A-211ENST00000618700 FAM198AQ9UFP1 575 aa23.72■■□□□ 1.39
UPF3A-211ENST00000618700 CNTNAP1P78357 1384 aa23.72■■□□□ 1.39
UPF3A-211ENST00000618700 MAP1SQ66K74 1059 aaPredicted RBP23.71■■□□□ 1.39
UPF3A-211ENST00000618700 STRBPQ96SI9 672 aaKnown RBP23.71■■□□□ 1.39
UPF3A-211ENST00000618700 DDX4Q9NQI0 724 aaKnown RBP23.71■■□□□ 1.39
UPF3A-211ENST00000618700 POLR2AP24928 1970 aaKnown RBP23.71■■□□□ 1.39
UPF3A-211ENST00000618700 DDX60LQ5H9U9 1706 aaKnown RBP23.7■■□□□ 1.39
UPF3A-211ENST00000618700 TCP10L2B9ZVM9 353 aa23.7■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 153.4 ms