RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 AATFQ9NY61 560 aaKnown RBP eCLIP17.25■□□□□ 0.35
UPF1-211ENST00000600868 SPDYE2BA6NHP3 402 aa17.24■□□□□ 0.35
UPF1-211ENST00000600868 GPAA1O43292 621 aa17.24■□□□□ 0.35
UPF1-211ENST00000600868 MBD4O95243 580 aa17.24■□□□□ 0.35
UPF1-211ENST00000600868 SPDYE6P0CI01 402 aa17.24■□□□□ 0.35
UPF1-211ENST00000600868 STRBPQ96SI9 672 aaKnown RBP17.24■□□□□ 0.35
UPF1-211ENST00000600868 IL25Q9H293 177 aa17.24■□□□□ 0.35
UPF1-211ENST00000600868 ADAMTSL1Q8N6G6 1762 aa17.24■□□□□ 0.35
UPF1-211ENST00000600868 WDR90Q96KV7 1748 aa17.24■□□□□ 0.35
UPF1-211ENST00000600868 CCDC171Q6TFL3 1326 aa17.23■□□□□ 0.35
UPF1-211ENST00000600868 EIF5BO60841 1220 aaKnown RBP17.23■□□□□ 0.35
UPF1-211ENST00000600868 GNAT2P19087 354 aa17.23■□□□□ 0.35
UPF1-211ENST00000600868 EPS15P42566 896 aa17.23■□□□□ 0.35
UPF1-211ENST00000600868 DYNLL1P63167 89 aaKnown RBP17.23■□□□□ 0.35
UPF1-211ENST00000600868 CCDC129Q6ZRS4 1044 aa17.23■□□□□ 0.35
UPF1-211ENST00000600868 ZNF589Q86UQ0 364 aaPredicted RBP17.23■□□□□ 0.35
UPF1-211ENST00000600868 LCORLQ8N3X6 602 aa17.23■□□□□ 0.35
UPF1-211ENST00000600868 PRMT6Q96LA8 375 aaPredicted RBP17.23■□□□□ 0.35
UPF1-211ENST00000600868 ARMT1Q9H993 441 aa17.23■□□□□ 0.35
UPF1-211ENST00000600868 PCDHAC2Q9Y5I4 1007 aa17.23■□□□□ 0.35
UPF1-211ENST00000600868 SCN4AP35499 1836 aa17.22■□□□□ 0.35
UPF1-211ENST00000600868 IQCA1LA6NCM1 817 aa17.22■□□□□ 0.35
UPF1-211ENST00000600868 WNT10BO00744 389 aa17.22■□□□□ 0.35
UPF1-211ENST00000600868 RHBDL3P58872 404 aa17.22■□□□□ 0.35
UPF1-211ENST00000600868 CDC42EP5Q6NZY7 148 aa17.22■□□□□ 0.35
UPF1-211ENST00000600868 SAMD7Q7Z3H4 446 aa17.22■□□□□ 0.35
UPF1-211ENST00000600868 ADARB2Q9NS39 739 aaKnown RBP17.22■□□□□ 0.35
UPF1-211ENST00000600868 HACL1Q9UJ83 578 aa17.22■□□□□ 0.35
UPF1-211ENST00000600868 RPAP1Q9BWH6 1393 aaPredicted RBP17.21■□□□□ 0.35
UPF1-211ENST00000600868 EGFRP00533 1210 aa17.21■□□□□ 0.35
UPF1-211ENST00000600868 KIF4BQ2VIQ3 1234 aa17.21■□□□□ 0.35
UPF1-211ENST00000600868 SH3RF3Q8TEJ3 882 aaPredicted RBP17.21■□□□□ 0.35
UPF1-211ENST00000600868 CRNKL1Q9BZJ0 848 aaKnown RBP17.21■□□□□ 0.35
UPF1-211ENST00000600868 USP40Q9NVE5 1235 aa17.21■□□□□ 0.35
UPF1-211ENST00000600868 POTECB2RU33 542 aa17.2■□□□□ 0.34
UPF1-211ENST00000600868 PATL2C9JE40 543 aaKnown RBP17.2■□□□□ 0.34
UPF1-211ENST00000600868 MYO1BO43795 1136 aa17.2■□□□□ 0.34
UPF1-211ENST00000600868 TBC1D10BQ4KMP7 808 aaPredicted RBP17.2■□□□□ 0.34
UPF1-211ENST00000600868 RBM26Q5T8P6 1007 aaKnown RBP17.2■□□□□ 0.34
UPF1-211ENST00000600868 KIAA1211Q6ZU35 1233 aa17.2■□□□□ 0.34
UPF1-211ENST00000600868 TDRD3Q9H7E2 651 aaKnown RBP17.2■□□□□ 0.34
UPF1-211ENST00000600868 SLC4A4Q9Y6R1 1079 aa17.2■□□□□ 0.34
UPF1-211ENST00000600868 NPM3O75607 178 aaKnown RBP17.19■□□□□ 0.34
UPF1-211ENST00000600868 REC8O95072 547 aa17.19■□□□□ 0.34
UPF1-211ENST00000600868 HSPD1P10809 573 aaKnown RBP17.19■□□□□ 0.34
UPF1-211ENST00000600868 EPHX2P34913 555 aa17.19■□□□□ 0.34
UPF1-211ENST00000600868 NBPF9Q3BBW0 867 aa17.19■□□□□ 0.34
UPF1-211ENST00000600868 SPDYE2Q495Y8 402 aa17.19■□□□□ 0.34
UPF1-211ENST00000600868 GIMAP6Q6P9H5 292 aa17.19■□□□□ 0.34
UPF1-211ENST00000600868 USP50Q70EL3 339 aaPredicted RBP17.19■□□□□ 0.34
UPF1-211ENST00000600868 TEX11Q8IYF3 940 aa17.19■□□□□ 0.34
UPF1-211ENST00000600868 TRPM4Q8TD43 1214 aa17.19■□□□□ 0.34
UPF1-211ENST00000600868 DSCC1Q9BVC3 393 aa17.19■□□□□ 0.34
UPF1-211ENST00000600868 ZNF70Q9UC06 446 aaPredicted RBP17.19■□□□□ 0.34
UPF1-211ENST00000600868 ECM29Q5VYK3 1845 aa17.19■□□□□ 0.34
UPF1-211ENST00000600868 GSG1L2A8MUP6 293 aa17.18■□□□□ 0.34
UPF1-211ENST00000600868 FOXP2O15409 715 aa17.18■□□□□ 0.34
UPF1-211ENST00000600868 EPB41L2O43491 1005 aaKnown RBP17.18■□□□□ 0.34
UPF1-211ENST00000600868 PRKAB2O43741 272 aa17.18■□□□□ 0.34
UPF1-211ENST00000600868 WDHD1O75717 1129 aaPredicted RBP17.18■□□□□ 0.34
UPF1-211ENST00000600868 HIRAP54198 1017 aaPredicted RBP17.18■□□□□ 0.34
UPF1-211ENST00000600868 ALX1Q15699 326 aa17.18■□□□□ 0.34
UPF1-211ENST00000600868 VPS53Q5VIR6 699 aa17.18■□□□□ 0.34
UPF1-211ENST00000600868 FKBP1CQ5VVH2 108 aa17.18■□□□□ 0.34
UPF1-211ENST00000600868 IDI2Q9BXS1 227 aa17.18■□□□□ 0.34
UPF1-211ENST00000600868 BACH2Q9BYV9 841 aa17.18■□□□□ 0.34
UPF1-211ENST00000600868 LSG1Q9H089 658 aaKnown RBP17.18■□□□□ 0.34
UPF1-211ENST00000600868 TAF1DQ9H5J8 278 aaPredicted RBP17.18■□□□□ 0.34
UPF1-211ENST00000600868 ATP8A2Q9NTI2 1148 aa17.18■□□□□ 0.34
UPF1-211ENST00000600868 TMOD2Q9NZR1 351 aa17.18■□□□□ 0.34
UPF1-211ENST00000600868 USP5P45974 858 aa17.17■□□□□ 0.34
UPF1-211ENST00000600868 PTH1RQ03431 593 aa17.17■□□□□ 0.34
UPF1-211ENST00000600868 TGFBRAP1Q8WUH2 860 aa17.17■□□□□ 0.34
UPF1-211ENST00000600868 SDR42E1Q8WUS8 393 aa17.17■□□□□ 0.34
UPF1-211ENST00000600868 CDK5RAP2Q96SN8 1893 aa17.17■□□□□ 0.34
UPF1-211ENST00000600868 DCP1AQ9NPI6 582 aaPredicted RBP17.17■□□□□ 0.34
UPF1-211ENST00000600868 ANO2Q9NQ90 1003 aa17.17■□□□□ 0.34
UPF1-211ENST00000600868 MKRN1Q9UHC7 482 aaKnown RBP17.17■□□□□ 0.34
UPF1-211ENST00000600868 FOCADQ5VW36 1801 aa17.17■□□□□ 0.34
UPF1-211ENST00000600868 CLRN2A0PK11 232 aa17.16■□□□□ 0.34
UPF1-211ENST00000600868 SEC24BO95487 1268 aa17.16■□□□□ 0.34
UPF1-211ENST00000600868 APPP05067 770 aa17.16■□□□□ 0.34
UPF1-211ENST00000600868 VEGFAP15692 232 aaPredicted RBP17.16■□□□□ 0.34
UPF1-211ENST00000600868 PNMA8AQ86V59 439 aaPredicted RBP17.16■□□□□ 0.34
UPF1-211ENST00000600868 IFNL3Q8IZI9 196 aa17.16■□□□□ 0.34
UPF1-211ENST00000600868 MAP4K1Q92918 833 aa17.16■□□□□ 0.34
UPF1-211ENST00000600868 NACAP1Q9BZK3 213 aa17.16■□□□□ 0.34
UPF1-211ENST00000600868 ZMYM6O95789 1325 aa17.16■□□□□ 0.34
UPF1-211ENST00000600868 NFIAQ12857 509 aa17.15■□□□□ 0.34
UPF1-211ENST00000600868 ZC3H15Q8WU90 426 aaKnown RBP17.15■□□□□ 0.34
UPF1-211ENST00000600868 DDRGK1Q96HY6 314 aa17.15■□□□□ 0.34
UPF1-211ENST00000600868 RRAGCQ9HB90 399 aa17.15■□□□□ 0.34
UPF1-211ENST00000600868 EPB41L4AQ9HCS5 686 aaPredicted RBP17.15■□□□□ 0.34
UPF1-211ENST00000600868 DDX4Q9NQI0 724 aaKnown RBP17.15■□□□□ 0.34
UPF1-211ENST00000600868 FAM198AQ9UFP1 575 aa17.15■□□□□ 0.34
UPF1-211ENST00000600868 FLT1P17948 1338 aa17.15■□□□□ 0.34
UPF1-211ENST00000600868 ENTPD3O75355 529 aa17.14■□□□□ 0.33
UPF1-211ENST00000600868 FGAP02671 866 aa17.14■□□□□ 0.33
UPF1-211ENST00000600868 CACNB3P54284 484 aa17.14■□□□□ 0.33
UPF1-211ENST00000600868 TNFAIP1Q13829 316 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms