RNA–Protein interactions for RNA: ENST00000600137.5

VRK3-219, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 822 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-219ENST00000600137 GPATCH3Q96I76 525 aa16.71■□□□□ 0.27
VRK3-219ENST00000600137 CNTNAP1P78357 1384 aa16.7■□□□□ 0.26
VRK3-219ENST00000600137 RFX7Q2KHR2 1363 aa16.7■□□□□ 0.26
VRK3-219ENST00000600137 ERC2O15083 957 aa16.7■□□□□ 0.26
VRK3-219ENST00000600137 LDHCP07864 332 aa16.7■□□□□ 0.26
VRK3-219ENST00000600137 BTDP43251 543 aa16.7■□□□□ 0.26
VRK3-219ENST00000600137 CACNB3P54284 484 aa16.7■□□□□ 0.26
VRK3-219ENST00000600137 GSTO1P78417 241 aa16.7■□□□□ 0.26
VRK3-219ENST00000600137 FKBP1CQ5VVH2 108 aa16.7■□□□□ 0.26
VRK3-219ENST00000600137 PRAMEF18Q5VWM3 479 aa16.7■□□□□ 0.26
VRK3-219ENST00000600137 CENPQQ7L2Z9 268 aaPredicted RBP16.7■□□□□ 0.26
VRK3-219ENST00000600137 SLF2Q8IX21 1173 aa16.7■□□□□ 0.26
VRK3-219ENST00000600137 MAGEB6Q8N7X4 407 aa16.7■□□□□ 0.26
VRK3-219ENST00000600137 TEPSINQ96N21 525 aa16.7■□□□□ 0.26
VRK3-219ENST00000600137 ZBTB47Q9UFB7 747 aaPredicted RBP16.7■□□□□ 0.26
VRK3-219ENST00000600137 TRPM7Q96QT4 1865 aa16.69■□□□□ 0.26
VRK3-219ENST00000600137 WDHD1O75717 1129 aaPredicted RBP16.69■□□□□ 0.26
VRK3-219ENST00000600137 MAP4K4O95819 1239 aaPredicted RBP16.69■□□□□ 0.26
VRK3-219ENST00000600137 PDE6AP16499 860 aa16.69■□□□□ 0.26
VRK3-219ENST00000600137 CYP7A1P22680 504 aa16.69■□□□□ 0.26
VRK3-219ENST00000600137 ADD2P35612 726 aa16.69■□□□□ 0.26
VRK3-219ENST00000600137 MAP3K12Q12852 859 aa16.69■□□□□ 0.26
VRK3-219ENST00000600137 NFIAQ12857 509 aa16.69■□□□□ 0.26
VRK3-219ENST00000600137 SLC9C2Q5TAH2 1124 aa16.69■□□□□ 0.26
VRK3-219ENST00000600137 APOBEC3FQ8IUX4 373 aaKnown RBP16.69■□□□□ 0.26
VRK3-219ENST00000600137 SULF1Q8IWU6 871 aa16.69■□□□□ 0.26
VRK3-219ENST00000600137 KBTBD3Q8NAB2 608 aa16.69■□□□□ 0.26
VRK3-219ENST00000600137 DEFB129Q9H1M3 183 aa16.69■□□□□ 0.26
VRK3-219ENST00000600137 USP40Q9NVE5 1235 aa16.69■□□□□ 0.26
VRK3-219ENST00000600137 FAM198AQ9UFP1 575 aa16.69■□□□□ 0.26
VRK3-219ENST00000600137 MYH7P12883 1935 aa16.68■□□□□ 0.26
VRK3-219ENST00000600137 MYO1BO43795 1136 aa16.68■□□□□ 0.26
VRK3-219ENST00000600137 RASA3Q14644 834 aa16.68■□□□□ 0.26
VRK3-219ENST00000600137 TMED8Q6PL24 325 aaPredicted RBP16.68■□□□□ 0.26
VRK3-219ENST00000600137 CDAN1Q8IWY9 1227 aa16.68■□□□□ 0.26
VRK3-219ENST00000600137 ZFPM1Q8IX07 1006 aa16.68■□□□□ 0.26
VRK3-219ENST00000600137 CDCA5Q96FF9 252 aa16.68■□□□□ 0.26
VRK3-219ENST00000600137 CCDC136Q96JN2 1154 aa16.68■□□□□ 0.26
VRK3-219ENST00000600137 IDI2Q9BXS1 227 aa16.68■□□□□ 0.26
VRK3-219ENST00000600137 VEZTQ9HBM0 779 aa16.68■□□□□ 0.26
VRK3-219ENST00000600137 PPP4R2Q9NY27 417 aa16.68■□□□□ 0.26
VRK3-219ENST00000600137 CDK5RAP2Q96SN8 1893 aa16.67■□□□□ 0.26
VRK3-219ENST00000600137 TCP10L2B9ZVM9 353 aa16.67■□□□□ 0.26
VRK3-219ENST00000600137 APLP1P51693 650 aa16.67■□□□□ 0.26
VRK3-219ENST00000600137 DYNLL1P63167 89 aaKnown RBP16.67■□□□□ 0.26
VRK3-219ENST00000600137 FAM83AQ86UY5 434 aa16.67■□□□□ 0.26
VRK3-219ENST00000600137 SKAP1Q86WV1 359 aa16.67■□□□□ 0.26
VRK3-219ENST00000600137 RIOK1Q9BRS2 568 aaKnown RBP16.67■□□□□ 0.26
VRK3-219ENST00000600137 DDX4Q9NQI0 724 aaKnown RBP16.67■□□□□ 0.26
VRK3-219ENST00000600137 ZNF532Q9HCE3 1301 aa16.67■□□□□ 0.26
VRK3-219ENST00000600137 HSPA6P17066 643 aa16.66■□□□□ 0.26
VRK3-219ENST00000600137 UBE3CQ15386 1083 aa16.66■□□□□ 0.26
VRK3-219ENST00000600137 SH3RF3Q8TEJ3 882 aaPredicted RBP16.66■□□□□ 0.26
VRK3-219ENST00000600137 TMEM39BQ9GZU3 492 aa16.66■□□□□ 0.26
VRK3-219ENST00000600137 AATFQ9NY61 560 aaKnown RBP eCLIP16.66■□□□□ 0.26
VRK3-219ENST00000600137 SSC5DA1L4H1 1573 aa16.65■□□□□ 0.26
VRK3-219ENST00000600137 NPM3O75607 178 aaKnown RBP16.65■□□□□ 0.26
VRK3-219ENST00000600137 NBPF12Q5TAG4 269 aaPredicted RBP16.65■□□□□ 0.26
VRK3-219ENST00000600137 SH3BP5LQ7L8J4 393 aa16.65■□□□□ 0.26
VRK3-219ENST00000600137 MIGA1Q8NAN2 632 aa16.65■□□□□ 0.26
VRK3-219ENST00000600137 PPP2R3BQ9Y5P8 575 aa16.65■□□□□ 0.26
VRK3-219ENST00000600137 CELF2O95319 508 aaKnown RBP16.64■□□□□ 0.25
VRK3-219ENST00000600137 GSPT1P15170 499 aaKnown RBP16.64■□□□□ 0.25
VRK3-219ENST00000600137 RGS3P49796 1198 aa16.64■□□□□ 0.25
VRK3-219ENST00000600137 HTRA3P83110 453 aa16.64■□□□□ 0.25
VRK3-219ENST00000600137 FAM151AQ8WW52 585 aa16.64■□□□□ 0.25
VRK3-219ENST00000600137 PUS7LQ9H0K6 701 aaKnown RBP16.64■□□□□ 0.25
VRK3-219ENST00000600137 FOCADQ5VW36 1801 aa16.63■□□□□ 0.25
VRK3-219ENST00000600137 RNF113AO15541 343 aaKnown RBP16.63■□□□□ 0.25
VRK3-219ENST00000600137 ENTPD3O75355 529 aa16.63■□□□□ 0.25
VRK3-219ENST00000600137 BAG3O95817 575 aa16.63■□□□□ 0.25
VRK3-219ENST00000600137 TNFAIP1Q13829 316 aa16.63■□□□□ 0.25
VRK3-219ENST00000600137 OSBP2Q969R2 916 aa16.63■□□□□ 0.25
VRK3-219ENST00000600137 EVI5LQ96CN4 794 aa16.63■□□□□ 0.25
VRK3-219ENST00000600137 MKRN1Q9UHC7 482 aaKnown RBP16.63■□□□□ 0.25
VRK3-219ENST00000600137 CEP350Q5VT06 3117 aa16.63■□□□□ 0.25
VRK3-219ENST00000600137 DDTLA6NHG4 134 aaPredicted RBP16.62■□□□□ 0.25
VRK3-219ENST00000600137 TMEM88BA6NKF7 163 aa16.62■□□□□ 0.25
VRK3-219ENST00000600137 TCP10Q12799 353 aa16.62■□□□□ 0.25
VRK3-219ENST00000600137 TTC22Q5TAA0 569 aa16.62■□□□□ 0.25
VRK3-219ENST00000600137 TEX11Q8IYF3 940 aa16.62■□□□□ 0.25
VRK3-219ENST00000600137 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.62■□□□□ 0.251e-9■■■□□ 14.6
VRK3-219ENST00000600137 TMOD2Q9NZR1 351 aa16.62■□□□□ 0.25
VRK3-219ENST00000600137 FZD1Q9UP38 647 aa16.62■□□□□ 0.25
VRK3-219ENST00000600137 RPAP1Q9BWH6 1393 aaPredicted RBP16.62■□□□□ 0.25
VRK3-219ENST00000600137 PLCG2P16885 1265 aa16.61■□□□□ 0.25
VRK3-219ENST00000600137 TNNI2P48788 182 aa16.61■□□□□ 0.25
VRK3-219ENST00000600137 ZMYM1Q5SVZ6 1142 aa16.61■□□□□ 0.25
VRK3-219ENST00000600137 ZSCAN25Q6NSZ9 544 aa16.61■□□□□ 0.25
VRK3-219ENST00000600137 MOB2Q70IA6 237 aa16.61■□□□□ 0.25
VRK3-219ENST00000600137 LCORLQ8N3X6 602 aa16.61■□□□□ 0.25
VRK3-219ENST00000600137 SEC62Q99442 399 aaKnown RBP16.61■□□□□ 0.25
VRK3-219ENST00000600137 CREBZFQ9NS37 354 aa16.61■□□□□ 0.25
VRK3-219ENST00000600137 ATRNL1Q5VV63 1379 aa16.61■□□□□ 0.25
VRK3-219ENST00000600137 MAGEB6P1A0A0J9YX57 407 aa16.6■□□□□ 0.25
VRK3-219ENST00000600137 USP2O75604 605 aaPredicted RBP16.6■□□□□ 0.25
VRK3-219ENST00000600137 ZFYP08048 801 aaPredicted RBP16.6■□□□□ 0.25
VRK3-219ENST00000600137 SLURP2P0DP57 97 aa16.6■□□□□ 0.25
VRK3-219ENST00000600137 MAP3K10Q02779 954 aa16.6■□□□□ 0.25
VRK3-219ENST00000600137 SAPCD2Q86UD0 394 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms