RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 IL17RAQ96F46 866 aa18.16■□□□□ 0.5
TRIM28-209ENST00000597423 SERPINA10Q9UK55 444 aa18.16■□□□□ 0.5
TRIM28-209ENST00000597423 GAKO14976 1311 aa18.16■□□□□ 0.5
TRIM28-209ENST00000597423 GSG1L2A8MUP6 293 aa18.15■□□□□ 0.5
TRIM28-209ENST00000597423 PSMD14O00487 310 aa18.15■□□□□ 0.5
TRIM28-209ENST00000597423 RPS12P25398 132 aaKnown RBP18.15■□□□□ 0.5
TRIM28-209ENST00000597423 BTDP43251 543 aa18.15■□□□□ 0.5
TRIM28-209ENST00000597423 USP5P45974 858 aa18.15■□□□□ 0.5
TRIM28-209ENST00000597423 DYNLL1P63167 89 aaKnown RBP18.15■□□□□ 0.5
TRIM28-209ENST00000597423 RASSF7Q02833 373 aa18.15■□□□□ 0.5
TRIM28-209ENST00000597423 AMOTL1Q8IY63 956 aa18.15■□□□□ 0.5
TRIM28-209ENST00000597423 MXD3Q9BW11 206 aa18.15■□□□□ 0.5
TRIM28-209ENST00000597423 DAXXQ9UER7 740 aaPredicted RBP18.15■□□□□ 0.5
TRIM28-209ENST00000597423 SNX14Q9Y5W7 946 aa18.15■□□□□ 0.5
TRIM28-209ENST00000597423 BRCA1P38398 1863 aaKnown RBP18.15■□□□□ 0.5
TRIM28-209ENST00000597423 ZMYM6O95789 1325 aa18.15■□□□□ 0.5
TRIM28-209ENST00000597423 DOCK2Q92608 1830 aa18.14■□□□□ 0.5
TRIM28-209ENST00000597423 MYH13Q9UKX3 1938 aa18.14■□□□□ 0.49
TRIM28-209ENST00000597423 FZD9O00144 591 aa18.14■□□□□ 0.49
TRIM28-209ENST00000597423 CRKP46108 304 aa18.14■□□□□ 0.49
TRIM28-209ENST00000597423 RBM5P52756 815 aaKnown RBP eCLIP18.14■□□□□ 0.49
TRIM28-209ENST00000597423 BECN1Q14457 450 aa18.14■□□□□ 0.49
TRIM28-209ENST00000597423 ZDHHC15Q96MV8 337 aa18.14■□□□□ 0.49
TRIM28-209ENST00000597423 TM6SF1Q9BZW5 370 aa18.14■□□□□ 0.49
TRIM28-209ENST00000597423 ST18O60284 1047 aa18.13■□□□□ 0.49
TRIM28-209ENST00000597423 HMGB1P09429 215 aaKnown RBP18.13■□□□□ 0.49
TRIM28-209ENST00000597423 USP17L8P0C7I0 530 aa18.13■□□□□ 0.49
TRIM28-209ENST00000597423 SCNN1DP51172 638 aa18.13■□□□□ 0.49
TRIM28-209ENST00000597423 DAGLAQ9Y4D2 1042 aa18.13■□□□□ 0.49
TRIM28-209ENST00000597423 MYH7P12883 1935 aa18.12■□□□□ 0.49
TRIM28-209ENST00000597423 PRKAB2O43741 272 aa18.12■□□□□ 0.49
TRIM28-209ENST00000597423 SLC3A2P08195 630 aaKnown RBP18.12■□□□□ 0.49
TRIM28-209ENST00000597423 TEX11Q8IYF3 940 aa18.12■□□□□ 0.49
TRIM28-209ENST00000597423 SH3RF3Q8TEJ3 882 aaPredicted RBP18.12■□□□□ 0.49
TRIM28-209ENST00000597423 GMLQ99445 158 aa18.12■□□□□ 0.49
TRIM28-209ENST00000597423 KIF2CQ99661 725 aa18.12■□□□□ 0.49
TRIM28-209ENST00000597423 USP40Q9NVE5 1235 aa18.12■□□□□ 0.49
TRIM28-209ENST00000597423 PALD1Q9ULE6 856 aa18.12■□□□□ 0.49
TRIM28-209ENST00000597423 ARFGEF1Q9Y6D6 1849 aa18.12■□□□□ 0.49
TRIM28-209ENST00000597423 FER1L6Q2WGJ9 1857 aa18.12■□□□□ 0.49
TRIM28-209ENST00000597423 CYP21A2P08686 494 aa18.11■□□□□ 0.49
TRIM28-209ENST00000597423 TRDNQ13061 729 aa18.11■□□□□ 0.49
TRIM28-209ENST00000597423 RASEFQ8IZ41 740 aa18.11■□□□□ 0.49
TRIM28-209ENST00000597423 DPF2Q92785 391 aa18.11■□□□□ 0.49
TRIM28-209ENST00000597423 JAKMIP1Q96N16 626 aaKnown RBP18.11■□□□□ 0.49
TRIM28-209ENST00000597423 CYP46A1Q9Y6A2 500 aa18.11■□□□□ 0.49
TRIM28-209ENST00000597423 YBX3P16989 372 aaKnown RBP eCLIP18.1■□□□□ 0.492e-19■□□□□ 8.2
TRIM28-209ENST00000597423 MCM2P49736 904 aa18.1■□□□□ 0.49
TRIM28-209ENST00000597423 NEK4P51957 841 aa18.1■□□□□ 0.49
TRIM28-209ENST00000597423 DLGAP5Q15398 846 aa18.1■□□□□ 0.49
TRIM28-209ENST00000597423 SDR42E1Q8WUS8 393 aa18.1■□□□□ 0.49
TRIM28-209ENST00000597423 NEK1Q96PY6 1258 aa18.1■□□□□ 0.49
TRIM28-209ENST00000597423 RNF41Q9H4P4 317 aaPredicted RBP18.1■□□□□ 0.49
TRIM28-209ENST00000597423 ARPP21Q9UBL0 812 aaPredicted RBP18.1■□□□□ 0.49
TRIM28-209ENST00000597423 CCDC88AQ3V6T2 1871 aa18.09■□□□□ 0.49
TRIM28-209ENST00000597423 FOXP2O15409 715 aa18.09■□□□□ 0.49
TRIM28-209ENST00000597423 PCP11498 1178 aaKnown RBP18.09■□□□□ 0.49
TRIM28-209ENST00000597423 CFAP100Q494V2 611 aa18.09■□□□□ 0.49
TRIM28-209ENST00000597423 SBK1Q52WX2 424 aa18.09■□□□□ 0.49
TRIM28-209ENST00000597423 APOBEC3HQ6NTF7 200 aaKnown RBP18.09■□□□□ 0.49
TRIM28-209ENST00000597423 BLOC1S2Q6QNY1 142 aa18.09■□□□□ 0.49
TRIM28-209ENST00000597423 TGFBRAP1Q8WUH2 860 aa18.09■□□□□ 0.49
TRIM28-209ENST00000597423 SNX21Q969T3 373 aa18.09■□□□□ 0.49
TRIM28-209ENST00000597423 ZSWIM6Q9HCJ5 1215 aa18.09■□□□□ 0.49
TRIM28-209ENST00000597423 DCP1AQ9NPI6 582 aaPredicted RBP18.09■□□□□ 0.49
TRIM28-209ENST00000597423 TMOD2Q9NZR1 351 aa18.09■□□□□ 0.49
TRIM28-209ENST00000597423 GJA3Q9Y6H8 435 aa18.09■□□□□ 0.49
TRIM28-209ENST00000597423 DCAF8L1A6NGE4 600 aa18.08■□□□□ 0.48
TRIM28-209ENST00000597423 MINDY4BA8MYZ0 360 aa18.08■□□□□ 0.48
TRIM28-209ENST00000597423 MYO1BO43795 1136 aa18.08■□□□□ 0.48
TRIM28-209ENST00000597423 CASTP20810 708 aaKnown RBP18.08■□□□□ 0.48
TRIM28-209ENST00000597423 NT5C2P49902 561 aa18.08■□□□□ 0.48
TRIM28-209ENST00000597423 RHBDL3P58872 404 aa18.08■□□□□ 0.48
TRIM28-209ENST00000597423 HSCBQ8IWL3 235 aa18.08■□□□□ 0.48
TRIM28-209ENST00000597423 MTMR14Q8NCE2 650 aa18.08■□□□□ 0.48
TRIM28-209ENST00000597423 CNNM2Q9H8M5 875 aa18.08■□□□□ 0.48
TRIM28-209ENST00000597423 EPB41L4AQ9HCS5 686 aaPredicted RBP18.08■□□□□ 0.48
TRIM28-209ENST00000597423 MCM9Q9NXL9 1143 aa18.08■□□□□ 0.48
TRIM28-209ENST00000597423 RNF181Q9P0P0 153 aa18.08■□□□□ 0.48
TRIM28-209ENST00000597423 ANAPC4Q9UJX5 808 aa18.08■□□□□ 0.48
TRIM28-209ENST00000597423 ZBTB12Q9Y330 459 aaPredicted RBP18.08■□□□□ 0.48
TRIM28-209ENST00000597423 CHD4Q14839 1912 aa18.08■□□□□ 0.48
TRIM28-209ENST00000597423 MAST2Q6P0Q8 1798 aa18.07■□□□□ 0.48
TRIM28-209ENST00000597423 USP17L12C9JPN9 530 aa18.07■□□□□ 0.48
TRIM28-209ENST00000597423 USP17L21D6R901 530 aa18.07■□□□□ 0.48
TRIM28-209ENST00000597423 E7EWF7 191 aa18.07■□□□□ 0.48
TRIM28-209ENST00000597423 NPM3O75607 178 aaKnown RBP18.07■□□□□ 0.48
TRIM28-209ENST00000597423 POLR3DP05423 398 aaPredicted RBP18.07■□□□□ 0.48
TRIM28-209ENST00000597423 PRELPP51888 382 aa18.07■□□□□ 0.48
TRIM28-209ENST00000597423 HAND2P61296 217 aa18.07■□□□□ 0.48
TRIM28-209ENST00000597423 PPARAQ07869 468 aa18.07■□□□□ 0.48
TRIM28-209ENST00000597423 CDC42EP5Q6NZY7 148 aa18.07■□□□□ 0.48
TRIM28-209ENST00000597423 MFSD6Q6ZSS7 791 aa18.07■□□□□ 0.48
TRIM28-209ENST00000597423 RUFY3Q7L099 469 aa18.07■□□□□ 0.48
TRIM28-209ENST00000597423 RALYLQ86SE5 291 aaKnown RBP18.07■□□□□ 0.48
TRIM28-209ENST00000597423 GPC2Q8N158 579 aa18.07■□□□□ 0.48
TRIM28-209ENST00000597423 NCOA7Q8NI08 942 aa18.07■□□□□ 0.48
TRIM28-209ENST00000597423 ZNF287Q9HBT7 754 aa18.07■□□□□ 0.48
TRIM28-209ENST00000597423 MYO5AQ9Y4I1 1855 aaKnown RBP18.07■□□□□ 0.48
TRIM28-209ENST00000597423 H7C1D1 291 aa18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms