RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 RBM19Q9Y4C8 960 aaKnown RBP10.97□□□□□ -0.65
SMAD4-209ENST00000589941 SCN11AQ9UI33 1791 aa10.96□□□□□ -0.65
SMAD4-209ENST00000589941 RTL1A6NKG5 1358 aa10.96□□□□□ -0.65
SMAD4-209ENST00000589941 CARMIL3Q8ND23 1372 aa10.96□□□□□ -0.65
SMAD4-209ENST00000589941 ATG7O95352 703 aa10.96□□□□□ -0.65
SMAD4-209ENST00000589941 GTF2E1P29083 439 aaPredicted RBP10.96□□□□□ -0.65
SMAD4-209ENST00000589941 SLC9A9Q8IVB4 645 aa10.96□□□□□ -0.65
SMAD4-209ENST00000589941 TSPAN10Q9H1Z9 355 aaPredicted RBP10.96□□□□□ -0.65
SMAD4-209ENST00000589941 TIMMDC1Q9NPL8 285 aa10.96□□□□□ -0.65
SMAD4-209ENST00000589941 SLX4Q8IY92 1834 aa10.95□□□□□ -0.66
SMAD4-209ENST00000589941 CGNL1Q0VF96 1302 aa10.95□□□□□ -0.66
SMAD4-209ENST00000589941 RASSF10A6NK89 507 aa10.95□□□□□ -0.66
SMAD4-209ENST00000589941 TMEM88BA6NKF7 163 aa10.95□□□□□ -0.66
SMAD4-209ENST00000589941 H3BM21 787 aa10.95□□□□□ -0.66
SMAD4-209ENST00000589941 PLA2G4AP47712 749 aa10.95□□□□□ -0.66
SMAD4-209ENST00000589941 WDR44Q5JSH3 913 aa10.95□□□□□ -0.66
SMAD4-209ENST00000589941 TRAPPC3LQ5T215 181 aa10.95□□□□□ -0.66
SMAD4-209ENST00000589941 STK32AQ8WU08 396 aa10.95□□□□□ -0.66
SMAD4-209ENST00000589941 RAPGEF4Q8WZA2 1011 aa10.95□□□□□ -0.66
SMAD4-209ENST00000589941 CUEDC1Q9NWM3 386 aaPredicted RBP10.95□□□□□ -0.66
SMAD4-209ENST00000589941 RTCBQ9Y3I0 505 aaKnown RBP10.95□□□□□ -0.66
SMAD4-209ENST00000589941 NCAPD2Q15021 1401 aa10.94□□□□□ -0.66
SMAD4-209ENST00000589941 WDR33Q9C0J8 1336 aaKnown RBP10.94□□□□□ -0.66
SMAD4-209ENST00000589941 TATP17735 454 aaPredicted RBP10.94□□□□□ -0.66
SMAD4-209ENST00000589941 GAS2L2Q8NHY3 880 aa10.94□□□□□ -0.66
SMAD4-209ENST00000589941 FAM200AQ8TCP9 573 aa10.94□□□□□ -0.66
SMAD4-209ENST00000589941 ZDHHC1Q8WTX9 485 aa10.94□□□□□ -0.66
SMAD4-209ENST00000589941 NIFKQ9BYG3 293 aaKnown RBP10.94□□□□□ -0.66
SMAD4-209ENST00000589941 DYRK1BQ9Y463 629 aa10.94□□□□□ -0.66
SMAD4-209ENST00000589941 POLRMTO00411 1230 aaKnown RBP10.93□□□□□ -0.66
SMAD4-209ENST00000589941 C21orf2O43822 256 aa10.93□□□□□ -0.66
SMAD4-209ENST00000589941 AMPHP49418 695 aa10.93□□□□□ -0.66
SMAD4-209ENST00000589941 SOX10P56693 466 aa10.93□□□□□ -0.66
SMAD4-209ENST00000589941 ELOAQ14241 798 aaKnown RBP10.93□□□□□ -0.66
SMAD4-209ENST00000589941 RRS1Q15050 365 aaKnown RBP10.93□□□□□ -0.66
SMAD4-209ENST00000589941 NPAS3Q8IXF0 933 aa10.93□□□□□ -0.66
SMAD4-209ENST00000589941 GAS2L1Q99501 681 aaPredicted RBP10.93□□□□□ -0.66
SMAD4-209ENST00000589941 ATG3Q9NT62 314 aa10.93□□□□□ -0.66
SMAD4-209ENST00000589941 BCORQ6W2J9 1755 aa10.93□□□□□ -0.66
SMAD4-209ENST00000589941 SMG6Q86US8 1419 aaKnown RBP10.92□□□□□ -0.66
SMAD4-209ENST00000589941 ERBB4Q15303 1308 aa10.92□□□□□ -0.66
SMAD4-209ENST00000589941 CNTNAP4Q9C0A0 1308 aa10.92□□□□□ -0.66
SMAD4-209ENST00000589941 USP42Q9H9J4 1324 aaKnown RBP10.92□□□□□ -0.66
SMAD4-209ENST00000589941 DDNO94850 711 aaPredicted RBP10.92□□□□□ -0.66
SMAD4-209ENST00000589941 ITGA6P23229 1130 aa10.92□□□□□ -0.66
SMAD4-209ENST00000589941 HMGB2P26583 209 aaKnown RBP10.92□□□□□ -0.66
SMAD4-209ENST00000589941 SH3PXD2AQ5TCZ1 1133 aa10.92□□□□□ -0.66
SMAD4-209ENST00000589941 HINFPQ9BQA5 517 aa10.92□□□□□ -0.66
SMAD4-209ENST00000589941 RFC4P35249 363 aa10.91□□□□□ -0.66
SMAD4-209ENST00000589941 LCE2AQ5TA79 106 aaPredicted RBP10.91□□□□□ -0.66
SMAD4-209ENST00000589941 GPAMQ9HCL2 828 aa10.91□□□□□ -0.66
SMAD4-209ENST00000589941 TMOD3Q9NYL9 352 aa10.91□□□□□ -0.66
SMAD4-209ENST00000589941 SCN7AQ01118 1682 aa10.91□□□□□ -0.66
SMAD4-209ENST00000589941 MAP2K1Q02750 393 aaPredicted RBP10.9□□□□□ -0.66
SMAD4-209ENST00000589941 FMR1Q06787 632 aaKnown RBP eCLIP10.9□□□□□ -0.66
SMAD4-209ENST00000589941 TEAD4Q15561 434 aa10.9□□□□□ -0.66
SMAD4-209ENST00000589941 DEFB115Q30KQ5 88 aa10.9□□□□□ -0.66
SMAD4-209ENST00000589941 TMEM164Q5U3C3 297 aa10.9□□□□□ -0.66
SMAD4-209ENST00000589941 TREML4Q6UXN2 200 aa10.9□□□□□ -0.66
SMAD4-209ENST00000589941 LDHDQ86WU2 507 aa10.9□□□□□ -0.66
SMAD4-209ENST00000589941 SLC12A5Q9H2X9 1139 aa10.9□□□□□ -0.66
SMAD4-209ENST00000589941 RPS6KA4O75676 772 aa10.89□□□□□ -0.67
SMAD4-209ENST00000589941 WFS1O76024 890 aa10.89□□□□□ -0.67
SMAD4-209ENST00000589941 MSX1P28360 303 aa10.89□□□□□ -0.67
SMAD4-209ENST00000589941 NOS2P35228 1153 aa10.89□□□□□ -0.67
SMAD4-209ENST00000589941 RIPOR1Q6ZS17 1223 aa10.89□□□□□ -0.67
SMAD4-209ENST00000589941 SCG3Q8WXD2 468 aaKnown RBP10.89□□□□□ -0.67
SMAD4-209ENST00000589941 TAF1DQ9H5J8 278 aaPredicted RBP10.89□□□□□ -0.67
SMAD4-209ENST00000589941 A0A1B0GTH6 734 aa10.88□□□□□ -0.67
SMAD4-209ENST00000589941 F11P03951 625 aa10.88□□□□□ -0.67
SMAD4-209ENST00000589941 THBS1P07996 1170 aa10.88□□□□□ -0.67
SMAD4-209ENST00000589941 TXLNAP40222 546 aa10.88□□□□□ -0.67
SMAD4-209ENST00000589941 GRM1Q13255 1194 aa10.88□□□□□ -0.67
SMAD4-209ENST00000589941 DGKZQ13574 1117 aa10.88□□□□□ -0.67
SMAD4-209ENST00000589941 DBN1Q16643 649 aa10.88□□□□□ -0.67
SMAD4-209ENST00000589941 MAP1SQ66K74 1059 aaPredicted RBP10.88□□□□□ -0.67
SMAD4-209ENST00000589941 TMC1Q8TDI8 760 aa10.88□□□□□ -0.67
SMAD4-209ENST00000589941 L3MBTL2Q969R5 705 aa10.88□□□□□ -0.67
SMAD4-209ENST00000589941 EML1O00423 815 aa10.87□□□□□ -0.67
SMAD4-209ENST00000589941 AOC2O75106 756 aa10.87□□□□□ -0.67
SMAD4-209ENST00000589941 ATP4AP20648 1035 aa10.87□□□□□ -0.67
SMAD4-209ENST00000589941 EAPPQ56P03 285 aaPredicted RBP10.87□□□□□ -0.67
SMAD4-209ENST00000589941 HSP90AB2PQ58FF8 381 aa10.87□□□□□ -0.67
SMAD4-209ENST00000589941 CYP4F22Q6NT55 531 aa10.87□□□□□ -0.67
SMAD4-209ENST00000589941 HDGFL2Q7Z4V5 671 aaPredicted RBP10.87□□□□□ -0.67
SMAD4-209ENST00000589941 VWA5B2Q8N398 1253 aa10.87□□□□□ -0.67
SMAD4-209ENST00000589941 GPR161Q8N6U8 529 aaKnown RBP10.87□□□□□ -0.67
SMAD4-209ENST00000589941 NANOS1Q8WY41 292 aaKnown RBP10.87□□□□□ -0.67
SMAD4-209ENST00000589941 CAPNS2Q96L46 248 aa10.87□□□□□ -0.67
SMAD4-209ENST00000589941 ABT1Q9ULW3 272 aaKnown RBP10.87□□□□□ -0.67
SMAD4-209ENST00000589941 INSRP06213 1382 aa10.87□□□□□ -0.67
SMAD4-209ENST00000589941 ZNF541Q9H0D2 1346 aa10.86□□□□□ -0.67
SMAD4-209ENST00000589941 CDC14CA4D256 554 aa10.86□□□□□ -0.67
SMAD4-209ENST00000589941 PPP1R12BO60237 982 aaPredicted RBP10.86□□□□□ -0.67
SMAD4-209ENST00000589941 TM4SF1P30408 202 aa10.86□□□□□ -0.67
SMAD4-209ENST00000589941 PSMA6P60900 246 aaKnown RBP10.86□□□□□ -0.67
SMAD4-209ENST00000589941 TTLL6Q8N841 843 aa10.86□□□□□ -0.67
SMAD4-209ENST00000589941 RUBCNLQ9H714 662 aa10.86□□□□□ -0.67
SMAD4-209ENST00000589941 SERTM1A2A2V5 107 aa10.85□□□□□ -0.67
SMAD4-209ENST00000589941 VSIG8P0DPA2 414 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms