RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 LDHCP07864 332 aa30■■■□□ 2.39
SHMT1-207ENST00000580002 GMLQ99445 158 aa29.99■■■□□ 2.39
SHMT1-207ENST00000580002 SHTN1A0MZ66 631 aa29.98■■■□□ 2.39
SHMT1-207ENST00000580002 CPA1P15085 419 aa29.98■■■□□ 2.39
SHMT1-207ENST00000580002 CRKP46108 304 aa29.98■■■□□ 2.39
SHMT1-207ENST00000580002 PPP4CP60510 307 aa29.98■■■□□ 2.39
SHMT1-207ENST00000580002 EVX2Q03828 476 aa29.98■■■□□ 2.39
SHMT1-207ENST00000580002 RHBDL3P58872 404 aa29.97■■■□□ 2.39
SHMT1-207ENST00000580002 CIAPIN1Q6FI81 312 aa29.97■■■□□ 2.39
SHMT1-207ENST00000580002 STOX1Q6ZVD7 989 aa29.97■■■□□ 2.39
SHMT1-207ENST00000580002 FZD9O00144 591 aa29.96■■■□□ 2.39
SHMT1-207ENST00000580002 IGSF3O75054 1194 aa29.95■■■□□ 2.39
SHMT1-207ENST00000580002 CD2BP2O95400 341 aaKnown RBP29.95■■■□□ 2.39
SHMT1-207ENST00000580002 APOBEC3HQ6NTF7 200 aaKnown RBP29.95■■■□□ 2.39
SHMT1-207ENST00000580002 UPF3BQ9BZI7 483 aaKnown RBP29.95■■■□□ 2.39
SHMT1-207ENST00000580002 NBPF3Q9H094 633 aa29.95■■■□□ 2.39
SHMT1-207ENST00000580002 ZNF541Q9H0D2 1346 aa29.95■■■□□ 2.39
SHMT1-207ENST00000580002 PSME4Q14997 1843 aa29.95■■■□□ 2.38
SHMT1-207ENST00000580002 GNAT2P19087 354 aa29.95■■■□□ 2.38
SHMT1-207ENST00000580002 LMNB1P20700 586 aa29.95■■■□□ 2.38
SHMT1-207ENST00000580002 INCENPQ9NQS7 918 aa29.95■■■□□ 2.38
SHMT1-207ENST00000580002 TACC3Q9Y6A5 838 aa29.95■■■□□ 2.38
SHMT1-207ENST00000580002 CYP2D7A0A087X1C5 515 aa29.94■■■□□ 2.38
SHMT1-207ENST00000580002 BAG3O95817 575 aa29.94■■■□□ 2.38
SHMT1-207ENST00000580002 ANP32AP39687 249 aaKnown RBP29.94■■■□□ 2.38
SHMT1-207ENST00000580002 ANAPC15P60006 121 aa29.94■■■□□ 2.38
SHMT1-207ENST00000580002 ALX1Q15699 326 aa29.94■■■□□ 2.38
SHMT1-207ENST00000580002 TMED8Q6PL24 325 aaPredicted RBP29.94■■■□□ 2.38
SHMT1-207ENST00000580002 HHIPL2Q6UWX4 724 aa29.94■■■□□ 2.38
SHMT1-207ENST00000580002 TEKT1Q969V4 418 aa29.94■■■□□ 2.38
SHMT1-207ENST00000580002 IL17RAQ96F46 866 aa29.94■■■□□ 2.38
SHMT1-207ENST00000580002 GPR162Q16538 588 aa29.93■■■□□ 2.38
SHMT1-207ENST00000580002 SLF2Q8IX21 1173 aa29.93■■■□□ 2.38
SHMT1-207ENST00000580002 NKX2-3Q8TAU0 364 aa29.93■■■□□ 2.38
SHMT1-207ENST00000580002 TGFBRAP1Q8WUH2 860 aa29.93■■■□□ 2.38
SHMT1-207ENST00000580002 CRNKL1Q9BZJ0 848 aaKnown RBP29.93■■■□□ 2.38
SHMT1-207ENST00000580002 NAPBQ9H115 298 aa29.93■■■□□ 2.38
SHMT1-207ENST00000580002 RBM5P52756 815 aaKnown RBP eCLIP29.92■■■□□ 2.38
SHMT1-207ENST00000580002 SLC4A8Q2Y0W8 1093 aa29.92■■■□□ 2.38
SHMT1-207ENST00000580002 STK11IPQ8N1F8 1099 aa29.92■■■□□ 2.38
SHMT1-207ENST00000580002 DCP1AQ9NPI6 582 aaPredicted RBP29.92■■■□□ 2.38
SHMT1-207ENST00000580002 GJA3Q9Y6H8 435 aa29.92■■■□□ 2.38
SHMT1-207ENST00000580002 TDO2P48775 406 aa29.92■■■□□ 2.38
SHMT1-207ENST00000580002 JAKMIP1Q96N16 626 aaKnown RBP29.92■■■□□ 2.38
SHMT1-207ENST00000580002 NOL10Q9BSC4 688 aaKnown RBP29.92■■■□□ 2.38
SHMT1-207ENST00000580002 ZKSCAN1P17029 563 aaPredicted RBP29.91■■■□□ 2.38
SHMT1-207ENST00000580002 CTDSPL2Q05D32 466 aa29.91■■■□□ 2.38
SHMT1-207ENST00000580002 CDC42EP5Q6NZY7 148 aa29.91■■■□□ 2.38
SHMT1-207ENST00000580002 MAPKAPK5Q8IW41 473 aa29.91■■■□□ 2.38
SHMT1-207ENST00000580002 CTNNA3Q9UI47 895 aa29.91■■■□□ 2.38
SHMT1-207ENST00000580002 CYP2D6P10635 497 aa29.9■■■□□ 2.38
SHMT1-207ENST00000580002 TSGA10IPQ3SY00 556 aa29.9■■■□□ 2.38
SHMT1-207ENST00000580002 CFAP100Q494V2 611 aa29.9■■■□□ 2.38
SHMT1-207ENST00000580002 RNF20Q5VTR2 975 aa29.9■■■□□ 2.38
SHMT1-207ENST00000580002 TEX11Q8IYF3 940 aa29.9■■■□□ 2.38
SHMT1-207ENST00000580002 ZDHHC15Q96MV8 337 aa29.9■■■□□ 2.38
SHMT1-207ENST00000580002 USP40Q9NVE5 1235 aa29.9■■■□□ 2.38
SHMT1-207ENST00000580002 MKRN1Q9UHC7 482 aaKnown RBP29.9■■■□□ 2.38
SHMT1-207ENST00000580002 SBF1O95248 1867 aa29.9■■■□□ 2.38
SHMT1-207ENST00000580002 SLC4A3P48751 1232 aa29.9■■■□□ 2.38
SHMT1-207ENST00000580002 TBC1D10CQ8IV04 446 aa29.9■■■□□ 2.38
SHMT1-207ENST00000580002 PRMT6Q96LA8 375 aaPredicted RBP29.9■■■□□ 2.38
SHMT1-207ENST00000580002 MRIQ9BWK5 157 aa29.9■■■□□ 2.38
SHMT1-207ENST00000580002 RNF181Q9P0P0 153 aa29.9■■■□□ 2.38
SHMT1-207ENST00000580002 E7EWF7 191 aa29.89■■■□□ 2.38
SHMT1-207ENST00000580002 ZNF213O14771 459 aa29.89■■■□□ 2.38
SHMT1-207ENST00000580002 USP5P45974 858 aa29.89■■■□□ 2.38
SHMT1-207ENST00000580002 CACNB3P54284 484 aa29.89■■■□□ 2.38
SHMT1-207ENST00000580002 EIF6P56537 245 aaKnown RBP29.89■■■□□ 2.38
SHMT1-207ENST00000580002 TNIP1Q15025 636 aa29.89■■■□□ 2.38
SHMT1-207ENST00000580002 RABEP1Q15276 862 aa29.89■■■□□ 2.38
SHMT1-207ENST00000580002 IMMTQ16891 758 aaKnown RBP29.89■■■□□ 2.38
SHMT1-207ENST00000580002 CTR9Q6PD62 1173 aa29.89■■■□□ 2.38
SHMT1-207ENST00000580002 AGBL3Q8NEM8 1001 aa29.89■■■□□ 2.38
SHMT1-207ENST00000580002 NACAP1Q9BZK3 213 aa29.89■■■□□ 2.38
SHMT1-207ENST00000580002 SERPINA10Q9UK55 444 aa29.89■■■□□ 2.38
SHMT1-207ENST00000580002 USP17L12C9JPN9 530 aa29.88■■■□□ 2.37
SHMT1-207ENST00000580002 USP17L21D6R901 530 aa29.88■■■□□ 2.37
SHMT1-207ENST00000580002 USP17L8P0C7I0 530 aa29.88■■■□□ 2.37
SHMT1-207ENST00000580002 CASTP20810 708 aaKnown RBP29.88■■■□□ 2.37
SHMT1-207ENST00000580002 NEK4P51957 841 aa29.88■■■□□ 2.37
SHMT1-207ENST00000580002 TCEANC2Q96MN5 208 aa29.88■■■□□ 2.37
SHMT1-207ENST00000580002 DDX4Q9NQI0 724 aaKnown RBP29.88■■■□□ 2.37
SHMT1-207ENST00000580002 MYO3BQ8WXR4 1341 aa29.88■■■□□ 2.37
SHMT1-207ENST00000580002 MINDY4BA8MYZ0 360 aa29.87■■■□□ 2.37
SHMT1-207ENST00000580002 HDLBPQ00341 1268 aaKnown RBP29.87■■■□□ 2.37
SHMT1-207ENST00000580002 SAP30BPQ9UHR5 308 aaKnown RBP29.87■■■□□ 2.37
SHMT1-207ENST00000580002 BAZ2AQ9UIF9 1905 aaKnown RBP29.87■■■□□ 2.37
SHMT1-207ENST00000580002 GMPSP49915 693 aaPredicted RBP29.87■■■□□ 2.37
SHMT1-207ENST00000580002 C9orf131Q5VYM1 1079 aa29.87■■■□□ 2.37
SHMT1-207ENST00000580002 ATP8A2Q9NTI2 1148 aa29.87■■■□□ 2.37
SHMT1-207ENST00000580002 WDHD1O75717 1129 aaPredicted RBP29.86■■■□□ 2.37
SHMT1-207ENST00000580002 TDRD3Q9H7E2 651 aaKnown RBP29.86■■■□□ 2.37
SHMT1-207ENST00000580002 RPAP1Q9BWH6 1393 aaPredicted RBP29.86■■■□□ 2.37
SHMT1-207ENST00000580002 ZMYM6O95789 1325 aa29.85■■■□□ 2.37
SHMT1-207ENST00000580002 EGFRP00533 1210 aa29.85■■■□□ 2.37
SHMT1-207ENST00000580002 NFIAQ12857 509 aa29.85■■■□□ 2.37
SHMT1-207ENST00000580002 PICALMQ13492 652 aa29.85■■■□□ 2.37
SHMT1-207ENST00000580002 ZSWIM6Q9HCJ5 1215 aa29.85■■■□□ 2.37
SHMT1-207ENST00000580002 MCM9Q9NXL9 1143 aa29.85■■■□□ 2.37
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms