RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 TMX4Q9H1E5 349 aaPredicted RBP8.53□□□□□ -1.04
VPS53-217ENST00000575100 NUDCQ9Y266 331 aa8.53□□□□□ -1.04
VPS53-217ENST00000575100 RRP7AQ9Y3A4 280 aaKnown RBP8.53□□□□□ -1.04
VPS53-217ENST00000575100 MZF1P28698 734 aaPredicted RBP8.52□□□□□ -1.05
VPS53-217ENST00000575100 PRKAR2BP31323 418 aa8.52□□□□□ -1.05
VPS53-217ENST00000575100 SLC27A3Q5K4L6 730 aa8.52□□□□□ -1.05
VPS53-217ENST00000575100 SULT6B1Q6IMI4 303 aa8.52□□□□□ -1.05
VPS53-217ENST00000575100 SLC16A10Q8TF71 515 aa8.52□□□□□ -1.05
VPS53-217ENST00000575100 CEP63Q96MT8 703 aa8.52□□□□□ -1.05
VPS53-217ENST00000575100 LRRC4BQ9NT99 713 aa8.52□□□□□ -1.05
VPS53-217ENST00000575100 AK5Q9Y6K8 562 aa8.52□□□□□ -1.05
VPS53-217ENST00000575100 ZBED9Q6R2W3 1325 aa8.52□□□□□ -1.05
VPS53-217ENST00000575100 IGSF1Q8N6C5 1336 aa8.52□□□□□ -1.05
VPS53-217ENST00000575100 C3orf80F5H4A9 247 aa8.52□□□□□ -1.05
VPS53-217ENST00000575100 KLF4O43474 513 aa8.52□□□□□ -1.05
VPS53-217ENST00000575100 TSPAN6O43657 245 aa8.52□□□□□ -1.05
VPS53-217ENST00000575100 FZD6O60353 706 aa8.52□□□□□ -1.05
VPS53-217ENST00000575100 TIE1P35590 1138 aa8.52□□□□□ -1.05
VPS53-217ENST00000575100 CDKN1CP49918 316 aaPredicted RBP8.52□□□□□ -1.05
VPS53-217ENST00000575100 TSGA10IPQ3SY00 556 aa8.52□□□□□ -1.05
VPS53-217ENST00000575100 NEUROD4Q9HD90 331 aa8.52□□□□□ -1.05
VPS53-217ENST00000575100 CCDC87Q9NVE4 849 aa8.52□□□□□ -1.05
VPS53-217ENST00000575100 USP5P45974 858 aa8.51□□□□□ -1.05
VPS53-217ENST00000575100 GTF2IP78347 998 aa8.51□□□□□ -1.05
VPS53-217ENST00000575100 RAB33AQ14088 237 aa8.51□□□□□ -1.05
VPS53-217ENST00000575100 BRDTQ58F21 947 aaPredicted RBP8.51□□□□□ -1.05
VPS53-217ENST00000575100 RUNDC1Q96C34 613 aa8.51□□□□□ -1.05
VPS53-217ENST00000575100 CFHR5Q9BXR6 569 aa8.51□□□□□ -1.05
VPS53-217ENST00000575100 INO80BQ9C086 356 aaPredicted RBP8.51□□□□□ -1.05
VPS53-217ENST00000575100 GGT7Q9UJ14 662 aa8.51□□□□□ -1.05
VPS53-217ENST00000575100 KDRP35968 1356 aa8.51□□□□□ -1.05
VPS53-217ENST00000575100 TAF1LQ8IZX4 1826 aa8.51□□□□□ -1.05
VPS53-217ENST00000575100 ESYT3A0FGR9 886 aa8.5□□□□□ -1.05
VPS53-217ENST00000575100 HSP90AA1P07900 732 aaKnown RBP8.5□□□□□ -1.05
VPS53-217ENST00000575100 ZRSR2Q15696 482 aaKnown RBP8.5□□□□□ -1.05
VPS53-217ENST00000575100 RBM19Q9Y4C8 960 aaKnown RBP8.5□□□□□ -1.05
VPS53-217ENST00000575100 C5P01031 1676 aa8.5□□□□□ -1.05
VPS53-217ENST00000575100 PNPLA7Q6ZV29 1317 aa8.5□□□□□ -1.05
VPS53-217ENST00000575100 EPB41L2O43491 1005 aaKnown RBP8.5□□□□□ -1.05
VPS53-217ENST00000575100 KRT18P05783 430 aaKnown RBP8.5□□□□□ -1.05
VPS53-217ENST00000575100 NEFMP07197 916 aa8.5□□□□□ -1.05
VPS53-217ENST00000575100 MAN1A1P33908 653 aa8.5□□□□□ -1.05
VPS53-217ENST00000575100 PDE6BP35913 854 aa8.5□□□□□ -1.05
VPS53-217ENST00000575100 RINLQ6ZS11 566 aa8.5□□□□□ -1.05
VPS53-217ENST00000575100 SYMPKQ92797 1274 aaKnown RBP8.5□□□□□ -1.05
VPS53-217ENST00000575100 SEC16BQ96JE7 1060 aa8.5□□□□□ -1.05
VPS53-217ENST00000575100 HINFPQ9BQA5 517 aa8.5□□□□□ -1.05
VPS53-217ENST00000575100 PAGR1Q9BTK6 254 aa8.5□□□□□ -1.05
VPS53-217ENST00000575100 ZNF700Q9H0M5 742 aa8.5□□□□□ -1.05
VPS53-217ENST00000575100 ZNF521Q96K83 1311 aa8.49□□□□□ -1.05
VPS53-217ENST00000575100 PNMA6FA0A0J9YX94 578 aa8.49□□□□□ -1.05
VPS53-217ENST00000575100 FOSP01100 380 aaPredicted RBP8.49□□□□□ -1.05
VPS53-217ENST00000575100 DESI1Q6ICB0 168 aa8.49□□□□□ -1.05
VPS53-217ENST00000575100 ANKS3Q6ZW76 656 aa8.49□□□□□ -1.05
VPS53-217ENST00000575100 HOMER1Q86YM7 354 aa8.49□□□□□ -1.05
VPS53-217ENST00000575100 JAMLQ86YT9 394 aa8.49□□□□□ -1.05
VPS53-217ENST00000575100 SDR16C5Q8N3Y7 309 aa8.49□□□□□ -1.05
VPS53-217ENST00000575100 LILRB2Q8N423 598 aa8.49□□□□□ -1.05
VPS53-217ENST00000575100 PPM1EQ8WY54 764 aa8.49□□□□□ -1.05
VPS53-217ENST00000575100 ENAMQ9NRM1 1142 aa8.49□□□□□ -1.05
VPS53-217ENST00000575100 TMEM260Q9NX78 707 aa8.49□□□□□ -1.05
VPS53-217ENST00000575100 NRDCO43847 1150 aa8.48□□□□□ -1.05
VPS53-217ENST00000575100 SSBP05455 408 aaKnown RBP eCLIP8.48□□□□□ -1.05
VPS53-217ENST00000575100 COL6A1P12109 1028 aa8.48□□□□□ -1.05
VPS53-217ENST00000575100 C1QTNF8P60827 252 aa8.48□□□□□ -1.05
VPS53-217ENST00000575100 MAPRE1Q15691 268 aaKnown RBP8.48□□□□□ -1.05
VPS53-217ENST00000575100 NUDT18Q6ZVK8 323 aa8.48□□□□□ -1.05
VPS53-217ENST00000575100 KRT26Q7Z3Y9 468 aa8.48□□□□□ -1.05
VPS53-217ENST00000575100 FEZ1Q99689 392 aa8.48□□□□□ -1.05
VPS53-217ENST00000575100 ARHGEF10LQ9HCE6 1279 aa8.48□□□□□ -1.05
VPS53-217ENST00000575100 NCAPD2Q15021 1401 aa8.48□□□□□ -1.05
VPS53-217ENST00000575100 MEGF6O75095 1541 aa8.48□□□□□ -1.05
VPS53-217ENST00000575100 POLD1P28340 1107 aa8.48□□□□□ -1.05
VPS53-217ENST00000575100 TMPOP42166 694 aaKnown RBP8.48□□□□□ -1.05
VPS53-217ENST00000575100 EPHB1P54762 984 aa8.48□□□□□ -1.05
VPS53-217ENST00000575100 NFX1Q12986 1120 aaKnown RBP8.48□□□□□ -1.05
VPS53-217ENST00000575100 BRD3Q15059 726 aa8.48□□□□□ -1.05
VPS53-217ENST00000575100 TRPM4Q8TD43 1214 aa8.48□□□□□ -1.05
VPS53-217ENST00000575100 TRIM55Q9BYV6 548 aa8.48□□□□□ -1.05
VPS53-217ENST00000575100 ANAPC4Q9UJX5 808 aa8.48□□□□□ -1.05
VPS53-217ENST00000575100 TRIM35Q9UPQ4 493 aa8.48□□□□□ -1.05
VPS53-217ENST00000575100 ATP8A1Q9Y2Q0 1164 aa8.48□□□□□ -1.05
VPS53-217ENST00000575100 ITGB4P16144 1822 aa8.47□□□□□ -1.05
VPS53-217ENST00000575100 MYL1P05976 194 aa8.47□□□□□ -1.05
VPS53-217ENST00000575100 POU3F3P20264 500 aaPredicted RBP8.47□□□□□ -1.05
VPS53-217ENST00000575100 ETFBP38117 255 aa8.47□□□□□ -1.05
VPS53-217ENST00000575100 EIF1AXP47813 144 aaKnown RBP8.47□□□□□ -1.05
VPS53-217ENST00000575100 PKD1L3Q7Z443 1732 aa8.47□□□□□ -1.05
VPS53-217ENST00000575100 MAPK8IP3Q9UPT6 1336 aa8.47□□□□□ -1.05
VPS53-217ENST00000575100 TOGARAM1Q9Y4F4 1720 aa8.46□□□□□ -1.05
VPS53-217ENST00000575100 ALDH1L1O75891 902 aa8.46□□□□□ -1.05
VPS53-217ENST00000575100 COPB2P35606 906 aa8.46□□□□□ -1.05
VPS53-217ENST00000575100 MTHFSDQ2M296 383 aaKnown RBP8.46□□□□□ -1.05
VPS53-217ENST00000575100 GLIPR1L2Q4G1C9 344 aa8.46□□□□□ -1.05
VPS53-217ENST00000575100 C16orf86Q6ZW13 317 aa8.46□□□□□ -1.05
VPS53-217ENST00000575100 SVIPQ8NHG7 77 aa8.46□□□□□ -1.05
VPS53-217ENST00000575100 FBF1Q8TES7 1133 aa8.46□□□□□ -1.05
VPS53-217ENST00000575100 DCBLD2Q96PD2 775 aa8.46□□□□□ -1.05
VPS53-217ENST00000575100 PCDHGA11Q9Y5H2 935 aa8.46□□□□□ -1.05
VPS53-217ENST00000575100 GALR2O43603 387 aaPredicted RBP8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms