RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 ZC3H15Q8WU90 426 aaKnown RBP20.61■□□□□ 0.89
NUP88-210ENST00000574867 PRMT6Q96LA8 375 aaPredicted RBP20.61■□□□□ 0.89
NUP88-210ENST00000574867 PCDHAC2Q9Y5I4 1007 aa20.61■□□□□ 0.89
NUP88-210ENST00000574867 PLCG2P16885 1265 aa20.6■□□□□ 0.89
NUP88-210ENST00000574867 HIRAP54198 1017 aaPredicted RBP20.6■□□□□ 0.89
NUP88-210ENST00000574867 NBPF9Q3BBW0 867 aa20.6■□□□□ 0.89
NUP88-210ENST00000574867 EAPPQ56P03 285 aaPredicted RBP20.6■□□□□ 0.89
NUP88-210ENST00000574867 PPP4CP60510 307 aa20.6■□□□□ 0.89
NUP88-210ENST00000574867 ZNF784Q8NCA9 323 aaPredicted RBP20.6■□□□□ 0.89
NUP88-210ENST00000574867 DIAPH3Q9NSV4 1193 aa20.59■□□□□ 0.89
NUP88-210ENST00000574867 AATFQ9NY61 560 aaKnown RBP eCLIP20.59■□□□□ 0.89
NUP88-210ENST00000574867 TMOD2Q9NZR1 351 aa20.59■□□□□ 0.89
NUP88-210ENST00000574867 MAGEB6P1A0A0J9YX57 407 aa20.58■□□□□ 0.89
NUP88-210ENST00000574867 SPDYE2Q495Y8 402 aa20.58■□□□□ 0.89
NUP88-210ENST00000574867 ZMYM1Q5SVZ6 1142 aa20.58■□□□□ 0.89
NUP88-210ENST00000574867 MIGA1Q8NAN2 632 aa20.58■□□□□ 0.89
NUP88-210ENST00000574867 PITPNM2Q9BZ72 1349 aa20.58■□□□□ 0.89
NUP88-210ENST00000574867 CDC42EP5Q6NZY7 148 aa20.58■□□□□ 0.88
NUP88-210ENST00000574867 LDHDQ86WU2 507 aa20.58■□□□□ 0.88
NUP88-210ENST00000574867 RIOK1Q9BRS2 568 aaKnown RBP20.58■□□□□ 0.88
NUP88-210ENST00000574867 TDRD3Q9H7E2 651 aaKnown RBP20.58■□□□□ 0.88
NUP88-210ENST00000574867 CHGBP05060 677 aa20.57■□□□□ 0.88
NUP88-210ENST00000574867 HELLSQ9NRZ9 838 aa20.57■□□□□ 0.88
NUP88-210ENST00000574867 USP40Q9NVE5 1235 aa20.57■□□□□ 0.88
NUP88-210ENST00000574867 GGA3Q9NZ52 723 aa20.57■□□□□ 0.88
NUP88-210ENST00000574867 ZNF70Q9UC06 446 aaPredicted RBP20.57■□□□□ 0.88
NUP88-210ENST00000574867 FOCADQ5VW36 1801 aa20.57■□□□□ 0.88
NUP88-210ENST00000574867 RHBDL3P58872 404 aa20.57■□□□□ 0.88
NUP88-210ENST00000574867 SLFNL1Q499Z3 407 aa20.57■□□□□ 0.88
NUP88-210ENST00000574867 AIDAQ96BJ3 306 aa20.57■□□□□ 0.88
NUP88-210ENST00000574867 PGAP2Q9UHJ9 254 aa20.57■□□□□ 0.88
NUP88-210ENST00000574867 ANGEL2Q5VTE6 544 aaKnown RBP20.56■□□□□ 0.88
NUP88-210ENST00000574867 FKBP1CQ5VVH2 108 aa20.56■□□□□ 0.88
NUP88-210ENST00000574867 APOBEC3FQ8IUX4 373 aaKnown RBP20.56■□□□□ 0.88
NUP88-210ENST00000574867 OSBP2Q969R2 916 aa20.56■□□□□ 0.88
NUP88-210ENST00000574867 PUS7LQ9H0K6 701 aaKnown RBP20.56■□□□□ 0.88
NUP88-210ENST00000574867 CDK5RAP2Q96SN8 1893 aa20.56■□□□□ 0.88
NUP88-210ENST00000574867 CLRN2A0PK11 232 aa20.55■□□□□ 0.88
NUP88-210ENST00000574867 KIF3CO14782 793 aa20.55■□□□□ 0.88
NUP88-210ENST00000574867 MBD4O95243 580 aa20.55■□□□□ 0.88
NUP88-210ENST00000574867 TNFAIP1Q13829 316 aa20.55■□□□□ 0.88
NUP88-210ENST00000574867 DYNLL1P63167 89 aaKnown RBP20.55■□□□□ 0.88
NUP88-210ENST00000574867 NMIQ13287 307 aaPredicted RBP20.55■□□□□ 0.88
NUP88-210ENST00000574867 DCPSQ96C86 337 aaKnown RBP20.55■□□□□ 0.88
NUP88-210ENST00000574867 ASTN2O75129 1339 aaPredicted RBP20.55■□□□□ 0.88
NUP88-210ENST00000574867 A0A0D9SFI3 127 aa20.54■□□□□ 0.88
NUP88-210ENST00000574867 CHMLP26374 656 aa20.54■□□□□ 0.88
NUP88-210ENST00000574867 TEX11Q8IYF3 940 aa20.54■□□□□ 0.88
NUP88-210ENST00000574867 LCORLQ8N3X6 602 aa20.54■□□□□ 0.88
NUP88-210ENST00000574867 SH3RF3Q8TEJ3 882 aaPredicted RBP20.54■□□□□ 0.88
NUP88-210ENST00000574867 FAM227BQ96M60 508 aa20.54■□□□□ 0.88
NUP88-210ENST00000574867 IDI2Q9BXS1 227 aa20.54■□□□□ 0.88
NUP88-210ENST00000574867 CRNKL1Q9BZJ0 848 aaKnown RBP20.54■□□□□ 0.88
NUP88-210ENST00000574867 VEZTQ9HBM0 779 aa20.54■□□□□ 0.88
NUP88-210ENST00000574867 CLEC11AQ9Y240 323 aa20.54■□□□□ 0.88
NUP88-210ENST00000574867 RAD50Q92878 1312 aa20.54■□□□□ 0.88
NUP88-210ENST00000574867 CDC45O75419 566 aa20.54■□□□□ 0.88
NUP88-210ENST00000574867 POTEIP0CG38 1075 aa20.54■□□□□ 0.88
NUP88-210ENST00000574867 POTEJP0CG39 1038 aa20.54■□□□□ 0.88
NUP88-210ENST00000574867 MCMDC2Q4G0Z9 681 aa20.54■□□□□ 0.88
NUP88-210ENST00000574867 RUFY2Q8WXA3 655 aa20.54■□□□□ 0.88
NUP88-210ENST00000574867 M0R2C6 588 aa20.53■□□□□ 0.88
NUP88-210ENST00000574867 GPAA1O43292 621 aa20.53■□□□□ 0.88
NUP88-210ENST00000574867 NPM3O75607 178 aaKnown RBP20.53■□□□□ 0.88
NUP88-210ENST00000574867 WDHD1O75717 1129 aaPredicted RBP20.53■□□□□ 0.88
NUP88-210ENST00000574867 TNNI2P48788 182 aa20.53■□□□□ 0.88
NUP88-210ENST00000574867 CASC1Q6TDU7 716 aa20.53■□□□□ 0.88
NUP88-210ENST00000574867 ARMT1Q9H993 441 aa20.53■□□□□ 0.88
NUP88-210ENST00000574867 GNAT2P19087 354 aa20.52■□□□□ 0.88
NUP88-210ENST00000574867 MFAP1P55081 439 aaKnown RBP20.52■□□□□ 0.88
NUP88-210ENST00000574867 CWC27Q6UX04 472 aaKnown RBP20.52■□□□□ 0.88
NUP88-210ENST00000574867 SEC62Q99442 399 aaKnown RBP20.52■□□□□ 0.88
NUP88-210ENST00000574867 FAM83AQ86UY5 434 aa20.52■□□□□ 0.87
NUP88-210ENST00000574867 SULF1Q8IWU6 871 aa20.52■□□□□ 0.87
NUP88-210ENST00000574867 STRBPQ96SI9 672 aaKnown RBP20.52■□□□□ 0.87
NUP88-210ENST00000574867 PPP2R3BQ9Y5P8 575 aa20.52■□□□□ 0.87
NUP88-210ENST00000574867 NAV1Q8NEY1 1877 aa20.52■□□□□ 0.87
NUP88-210ENST00000574867 CACNB3P54284 484 aa20.51■□□□□ 0.87
NUP88-210ENST00000574867 COL2A1P02458 1487 aaPredicted RBP20.51■□□□□ 0.87
NUP88-210ENST00000574867 RPAP1Q9BWH6 1393 aaPredicted RBP20.51■□□□□ 0.87
NUP88-210ENST00000574867 DDX60LQ5H9U9 1706 aaKnown RBP20.51■□□□□ 0.87
NUP88-210ENST00000574867 CCDC171Q6TFL3 1326 aa20.51■□□□□ 0.87
NUP88-210ENST00000574867 TCP10L2B9ZVM9 353 aa20.5■□□□□ 0.87
NUP88-210ENST00000574867 ENTPD3O75355 529 aa20.5■□□□□ 0.87
NUP88-210ENST00000574867 CHADLQ6NUI6 762 aa20.5■□□□□ 0.87
NUP88-210ENST00000574867 POLR2AP24928 1970 aaKnown RBP20.5■□□□□ 0.87
NUP88-210ENST00000574867 FLT1P17948 1338 aa20.5■□□□□ 0.87
NUP88-210ENST00000574867 USP5P45974 858 aa20.5■□□□□ 0.87
NUP88-210ENST00000574867 NFIAQ12857 509 aa20.5■□□□□ 0.87
NUP88-210ENST00000574867 CDC37L1Q7L3B6 337 aa20.5■□□□□ 0.87
NUP88-210ENST00000574867 KRT26Q7Z3Y9 468 aa20.5■□□□□ 0.87
NUP88-210ENST00000574867 CNTNAP1P78357 1384 aa20.49■□□□□ 0.87
NUP88-210ENST00000574867 TOMM70O94826 608 aa20.49■□□□□ 0.87
NUP88-210ENST00000574867 TGFBRAP1Q8WUH2 860 aa20.49■□□□□ 0.87
NUP88-210ENST00000574867 FAM198AQ9UFP1 575 aa20.49■□□□□ 0.87
NUP88-210ENST00000574867 SLC4A4Q9Y6R1 1079 aa20.49■□□□□ 0.87
NUP88-210ENST00000574867 PICALMQ13492 652 aa20.49■□□□□ 0.87
NUP88-210ENST00000574867 MAP1SQ66K74 1059 aaPredicted RBP20.49■□□□□ 0.87
NUP88-210ENST00000574867 RBM46Q8TBY0 533 aaKnown RBP20.49■□□□□ 0.87
NUP88-210ENST00000574867 FAM151AQ8WW52 585 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms