RNA–Protein interactions for RNA: ENST00000574755.5

VPS33B-208, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 2,356 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-208ENST00000574755 RRAGDQ9NQL2 400 aaPredicted RBP16.44■□□□□ 0.22
VPS33B-208ENST00000574755 MAGEB6P1A0A0J9YX57 407 aa16.43■□□□□ 0.22
VPS33B-208ENST00000574755 KLRK1P26718 216 aa16.43■□□□□ 0.22
VPS33B-208ENST00000574755 TMEM67Q5HYA8 995 aa16.43■□□□□ 0.22
VPS33B-208ENST00000574755 APOA5Q6Q788 366 aa16.43■□□□□ 0.22
VPS33B-208ENST00000574755 NFXL1Q6ZNB6 911 aa16.43■□□□□ 0.22
VPS33B-208ENST00000574755 BICD2Q8TD16 824 aa16.43■□□□□ 0.22
VPS33B-208ENST00000574755 C8orf76Q96K31 380 aa16.43■□□□□ 0.22
VPS33B-208ENST00000574755 KRT23Q9C075 422 aa16.43■□□□□ 0.22
VPS33B-208ENST00000574755 BCL11BQ9C0K0 894 aaPredicted RBP16.43■□□□□ 0.22
VPS33B-208ENST00000574755 TOMM22Q9NS69 142 aa16.43■□□□□ 0.22
VPS33B-208ENST00000574755 ZSWIM5Q9P217 1185 aa16.43■□□□□ 0.22
VPS33B-208ENST00000574755 TNRC6CQ9HCJ0 1690 aaKnown RBP16.43■□□□□ 0.22
VPS33B-208ENST00000574755 CACNA1SQ13698 1873 aa16.43■□□□□ 0.22
VPS33B-208ENST00000574755 IGDCC4Q8TDY8 1250 aa16.43■□□□□ 0.22
VPS33B-208ENST00000574755 LRRC4BQ9NT99 713 aa16.43■□□□□ 0.22
VPS33B-208ENST00000574755 RXRAP19793 462 aa16.42■□□□□ 0.22
VPS33B-208ENST00000574755 ADD1P35611 737 aaKnown RBP16.42■□□□□ 0.22
VPS33B-208ENST00000574755 RRP12Q5JTH9 1297 aaKnown RBP16.42■□□□□ 0.22
VPS33B-208ENST00000574755 FBXO33Q7Z6M2 555 aa16.42■□□□□ 0.22
VPS33B-208ENST00000574755 MICU3Q86XE3 530 aa16.42■□□□□ 0.22
VPS33B-208ENST00000574755 KLHL34Q8N239 644 aa16.42■□□□□ 0.22
VPS33B-208ENST00000574755 SDR42E1Q8WUS8 393 aa16.42■□□□□ 0.22
VPS33B-208ENST00000574755 PGBD1Q96JS3 809 aa16.42■□□□□ 0.22
VPS33B-208ENST00000574755 NUP62CLQ9H1M0 184 aa16.42■□□□□ 0.22
VPS33B-208ENST00000574755 SENP2Q9HC62 589 aa16.42■□□□□ 0.22
VPS33B-208ENST00000574755 DACT1Q9NYF0 836 aa16.42■□□□□ 0.22
VPS33B-208ENST00000574755 IFIT3O14879 490 aaKnown RBP16.42■□□□□ 0.22
VPS33B-208ENST00000574755 SEMA3EO15041 775 aa16.42■□□□□ 0.22
VPS33B-208ENST00000574755 STK11IPQ8N1F8 1099 aa16.42■□□□□ 0.22
VPS33B-208ENST00000574755 STAG1Q8WVM7 1258 aa16.42■□□□□ 0.22
VPS33B-208ENST00000574755 ZNF396Q96N95 335 aaPredicted RBP16.42■□□□□ 0.22
VPS33B-208ENST00000574755 LY9Q9HBG7 655 aa16.42■□□□□ 0.22
VPS33B-208ENST00000574755 TFCP2L1Q9NZI6 479 aa16.42■□□□□ 0.22
VPS33B-208ENST00000574755 ZBTB43O43298 467 aa16.41■□□□□ 0.22
VPS33B-208ENST00000574755 TM4SF1P30408 202 aa16.41■□□□□ 0.22
VPS33B-208ENST00000574755 HIBADHP31937 336 aaKnown RBP16.41■□□□□ 0.22
VPS33B-208ENST00000574755 NFIXQ14938 502 aa16.41■□□□□ 0.22
VPS33B-208ENST00000574755 ATL3Q6DD88 541 aa16.41■□□□□ 0.22
VPS33B-208ENST00000574755 OTUD7BQ6GQQ9 843 aa16.41■□□□□ 0.22
VPS33B-208ENST00000574755 PDLIM2Q96JY6 352 aa16.41■□□□□ 0.22
VPS33B-208ENST00000574755 FTOQ9C0B1 505 aaKnown RBP eCLIP16.41■□□□□ 0.22
VPS33B-208ENST00000574755 TACC3Q9Y6A5 838 aa16.41■□□□□ 0.22
VPS33B-208ENST00000574755 CDKL5O76039 1030 aa16.41■□□□□ 0.22
VPS33B-208ENST00000574755 LIFRP42702 1097 aa16.41■□□□□ 0.22
VPS33B-208ENST00000574755 CAMK4Q16566 473 aa16.41■□□□□ 0.22
VPS33B-208ENST00000574755 CPLX2Q6PUV4 134 aaKnown RBP16.41■□□□□ 0.22
VPS33B-208ENST00000574755 SGMS1Q86VZ5 419 aa16.41■□□□□ 0.22
VPS33B-208ENST00000574755 CCDC144CPQ8IYA2 1237 aa16.41■□□□□ 0.22
VPS33B-208ENST00000574755 CNBD1Q8NA66 436 aa16.41■□□□□ 0.22
VPS33B-208ENST00000574755 FBXO18Q8NFZ0 1043 aa16.41■□□□□ 0.22
VPS33B-208ENST00000574755 USP28Q96RU2 1077 aa16.41■□□□□ 0.22
VPS33B-208ENST00000574755 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.4■□□□□ 0.22
VPS33B-208ENST00000574755 ESPNB1AK53 854 aa16.4■□□□□ 0.22
VPS33B-208ENST00000574755 PPARAQ07869 468 aa16.4■□□□□ 0.22
VPS33B-208ENST00000574755 ILDR1Q86SU0 546 aaPredicted RBP16.4■□□□□ 0.22
VPS33B-208ENST00000574755 RIOK1Q9BRS2 568 aaKnown RBP16.4■□□□□ 0.22
VPS33B-208ENST00000574755 FUCA2Q9BTY2 467 aa16.4■□□□□ 0.22
VPS33B-208ENST00000574755 RNF41Q9H4P4 317 aaPredicted RBP16.4■□□□□ 0.22
VPS33B-208ENST00000574755 CCDC69A6NI79 296 aa16.4■□□□□ 0.22
VPS33B-208ENST00000574755 MINDY4BA8MYZ0 360 aa16.4■□□□□ 0.22
VPS33B-208ENST00000574755 ADRA2BP18089 450 aa16.4■□□□□ 0.22
VPS33B-208ENST00000574755 SART3Q15020 963 aaKnown RBP16.4■□□□□ 0.22
VPS33B-208ENST00000574755 MAP3K11Q16584 847 aa16.4■□□□□ 0.22
VPS33B-208ENST00000574755 MYL10Q9BUA6 226 aa16.4■□□□□ 0.22
VPS33B-208ENST00000574755 TNMDQ9H2S6 317 aa16.4■□□□□ 0.22
VPS33B-208ENST00000574755 QTRT2Q9H974 415 aaKnown RBP16.4■□□□□ 0.22
VPS33B-208ENST00000574755 DDX19AQ9NUU7 478 aaKnown RBP16.4■□□□□ 0.22
VPS33B-208ENST00000574755 RCOR1Q9UKL0 485 aa16.4■□□□□ 0.22
VPS33B-208ENST00000574755 SLC12A7Q9Y666 1083 aa16.4■□□□□ 0.22
VPS33B-208ENST00000574755 GOLGA8AA7E2F4 631 aa16.39■□□□□ 0.21
VPS33B-208ENST00000574755 CDC27P30260 824 aa16.39■□□□□ 0.21
VPS33B-208ENST00000574755 ZKSCAN3Q9BRR0 538 aa16.39■□□□□ 0.21
VPS33B-208ENST00000574755 UBR3Q6ZT12 1888 aa16.39■□□□□ 0.21
VPS33B-208ENST00000574755 BAZ2AQ9UIF9 1905 aaKnown RBP16.38■□□□□ 0.21
VPS33B-208ENST00000574755 NR1I2O75469 434 aa16.38■□□□□ 0.21
VPS33B-208ENST00000574755 CCDC192P0DO97 292 aa16.38■□□□□ 0.21
VPS33B-208ENST00000574755 DYNLL1P63167 89 aaKnown RBP16.38■□□□□ 0.21
VPS33B-208ENST00000574755 GJB4Q9NTQ9 266 aa16.38■□□□□ 0.21
VPS33B-208ENST00000574755 PDS5AQ29RF7 1337 aaKnown RBP16.38■□□□□ 0.21
VPS33B-208ENST00000574755 ERICH2A1L162 156 aa16.38■□□□□ 0.21
VPS33B-208ENST00000574755 CHAF1AQ13111 956 aaPredicted RBP16.38■□□□□ 0.21
VPS33B-208ENST00000574755 UVSSAQ2YD98 709 aa16.38■□□□□ 0.21
VPS33B-208ENST00000574755 SYNE3Q6ZMZ3 975 aa16.38■□□□□ 0.21
VPS33B-208ENST00000574755 ZNF384Q8TF68 577 aa16.38■□□□□ 0.21
VPS33B-208ENST00000574755 ANKIB1Q9P2G1 1089 aa16.38■□□□□ 0.21
VPS33B-208ENST00000574755 POLR3DP05423 398 aaPredicted RBP16.37■□□□□ 0.21
VPS33B-208ENST00000574755 GRAPQ13588 217 aa16.37■□□□□ 0.21
VPS33B-208ENST00000574755 WTAPQ15007 396 aa16.37■□□□□ 0.21
VPS33B-208ENST00000574755 TXNRD3Q86VQ6 643 aa16.37■□□□□ 0.21
VPS33B-208ENST00000574755 GRAPLQ8TC17 118 aaPredicted RBP16.37■□□□□ 0.21
VPS33B-208ENST00000574755 PHKBQ93100 1093 aa16.37■□□□□ 0.21
VPS33B-208ENST00000574755 NSUN4Q96CB9 384 aaKnown RBP16.37■□□□□ 0.21
VPS33B-208ENST00000574755 CCDC88AQ3V6T2 1871 aa16.37■□□□□ 0.21
VPS33B-208ENST00000574755 MECOMQ03112 1051 aa16.37■□□□□ 0.21
VPS33B-208ENST00000574755 ALG1Q9BT22 464 aa16.37■□□□□ 0.21
VPS33B-208ENST00000574755 ECM29Q5VYK3 1845 aa16.36■□□□□ 0.21
VPS33B-208ENST00000574755 IARSP41252 1262 aaKnown RBP16.36■□□□□ 0.21
VPS33B-208ENST00000574755 ME1P48163 572 aa16.36■□□□□ 0.21
VPS33B-208ENST00000574755 BRAPQ7Z569 592 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms