RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 MTMR7Q9Y216 660 aa11.6□□□□□ -0.55
VPS53-206ENST00000570359 PATL2C9JE40 543 aaKnown RBP11.6□□□□□ -0.55
VPS53-206ENST00000570359 ATP2B1P20020 1258 aa11.6□□□□□ -0.55
VPS53-206ENST00000570359 MFSD6Q6ZSS7 791 aa11.6□□□□□ -0.55
VPS53-206ENST00000570359 LLPHQ9BRT6 129 aaKnown RBP11.6□□□□□ -0.55
VPS53-206ENST00000570359 SLC26A6Q9BXS9 759 aa11.6□□□□□ -0.55
VPS53-206ENST00000570359 CLIC4Q9Y696 253 aa11.6□□□□□ -0.55
VPS53-206ENST00000570359 DDX60Q8IY21 1712 aaKnown RBP11.59□□□□□ -0.55
VPS53-206ENST00000570359 CCDC69A6NI79 296 aa11.59□□□□□ -0.55
VPS53-206ENST00000570359 KIF28PB7ZC32 967 aa11.59□□□□□ -0.55
VPS53-206ENST00000570359 ANO6Q4KMQ2 910 aa11.59□□□□□ -0.55
VPS53-206ENST00000570359 ILDR1Q86SU0 546 aaPredicted RBP11.59□□□□□ -0.55
VPS53-206ENST00000570359 TXNRD3Q86VQ6 643 aa11.59□□□□□ -0.55
VPS53-206ENST00000570359 AK7Q96M32 723 aa11.59□□□□□ -0.55
VPS53-206ENST00000570359 ALG1Q9BT22 464 aa11.59□□□□□ -0.55
VPS53-206ENST00000570359 AGXT2Q9BYV1 514 aa11.59□□□□□ -0.55
VPS53-206ENST00000570359 GOLPH3LQ9H4A5 285 aa11.59□□□□□ -0.55
VPS53-206ENST00000570359 ANKIB1Q9P2G1 1089 aa11.59□□□□□ -0.55
VPS53-206ENST00000570359 CFAP45Q9UL16 551 aa11.59□□□□□ -0.55
VPS53-206ENST00000570359 MAGEB6P1A0A0J9YX57 407 aa11.59□□□□□ -0.55
VPS53-206ENST00000570359 A0A1B0GVL5 298 aa11.59□□□□□ -0.55
VPS53-206ENST00000570359 SH2B2O14492 632 aaPredicted RBP11.59□□□□□ -0.55
VPS53-206ENST00000570359 ZBTB43O43298 467 aa11.59□□□□□ -0.55
VPS53-206ENST00000570359 RRP9O43818 475 aaKnown RBP11.59□□□□□ -0.55
VPS53-206ENST00000570359 CCDC192P0DO97 292 aa11.59□□□□□ -0.55
VPS53-206ENST00000570359 MARCKSP29966 332 aaPredicted RBP11.59□□□□□ -0.55
VPS53-206ENST00000570359 TYRO3Q06418 890 aa11.59□□□□□ -0.55
VPS53-206ENST00000570359 APOA5Q6Q788 366 aa11.59□□□□□ -0.55
VPS53-206ENST00000570359 C17orf53Q8N3J3 647 aaPredicted RBP11.59□□□□□ -0.55
VPS53-206ENST00000570359 NACAP1Q9BZK3 213 aa11.59□□□□□ -0.55
VPS53-206ENST00000570359 DNAJC25Q9H1X3 360 aa11.59□□□□□ -0.55
VPS53-206ENST00000570359 ZSCAN16Q9H4T2 348 aaPredicted RBP11.59□□□□□ -0.55
VPS53-206ENST00000570359 AATFQ9NY61 560 aaKnown RBP eCLIP11.59□□□□□ -0.55
VPS53-206ENST00000570359 STK38Q15208 465 aa11.58□□□□□ -0.56
VPS53-206ENST00000570359 ZSCAN30Q86W11 494 aa11.58□□□□□ -0.56
VPS53-206ENST00000570359 FSIP1Q8NA03 581 aa11.58□□□□□ -0.56
VPS53-206ENST00000570359 GNL3LQ9NVN8 582 aaKnown RBP11.58□□□□□ -0.56
VPS53-206ENST00000570359 SLC12A7Q9Y666 1083 aa11.58□□□□□ -0.56
VPS53-206ENST00000570359 AFF2P51816 1311 aa11.58□□□□□ -0.56
VPS53-206ENST00000570359 DHX16O60231 1041 aaKnown RBP11.58□□□□□ -0.56
VPS53-206ENST00000570359 RANBP6O60518 1105 aaKnown RBP11.58□□□□□ -0.56
VPS53-206ENST00000570359 PRDX5P30044 214 aa11.58□□□□□ -0.56
VPS53-206ENST00000570359 RPS8P62241 208 aaKnown RBP11.58□□□□□ -0.56
VPS53-206ENST00000570359 ZNF512BQ96KM6 892 aaPredicted RBP11.58□□□□□ -0.56
VPS53-206ENST00000570359 BAZ2BQ9UIF8 2168 aaKnown RBP11.58□□□□□ -0.56
VPS53-206ENST00000570359 SALL1Q9NSC2 1324 aa11.57□□□□□ -0.56
VPS53-206ENST00000570359 AKNAD1Q5T1N1 836 aa11.57□□□□□ -0.56
VPS53-206ENST00000570359 ISM2Q6H9L7 571 aa11.57□□□□□ -0.56
VPS53-206ENST00000570359 NAA16Q6N069 864 aaPredicted RBP11.57□□□□□ -0.56
VPS53-206ENST00000570359 CCDC73Q6ZRK6 1079 aa11.57□□□□□ -0.56
VPS53-206ENST00000570359 FAM84BQ96KN1 310 aaPredicted RBP11.57□□□□□ -0.56
VPS53-206ENST00000570359 TTC12Q9H892 705 aaPredicted RBP11.57□□□□□ -0.56
VPS53-206ENST00000570359 NARFQ9UHQ1 456 aa11.57□□□□□ -0.56
VPS53-206ENST00000570359 COL1A1P02452 1464 aaPredicted RBP11.57□□□□□ -0.56
VPS53-206ENST00000570359 AP5Z1O43299 807 aa11.57□□□□□ -0.56
VPS53-206ENST00000570359 RPS6KA4O75676 772 aa11.57□□□□□ -0.56
VPS53-206ENST00000570359 LETM1O95202 739 aaPredicted RBP11.57□□□□□ -0.56
VPS53-206ENST00000570359 HSPA1LP34931 641 aa11.57□□□□□ -0.56
VPS53-206ENST00000570359 SASS6Q6UVJ0 657 aa11.57□□□□□ -0.56
VPS53-206ENST00000570359 CLEC4GQ6UXB4 293 aa11.57□□□□□ -0.56
VPS53-206ENST00000570359 TPTE2Q6XPS3 522 aa11.57□□□□□ -0.56
VPS53-206ENST00000570359 LY9Q9HBG7 655 aa11.57□□□□□ -0.56
VPS53-206ENST00000570359 GUCY1A2P33402 732 aa11.56□□□□□ -0.56
VPS53-206ENST00000570359 CLCN1P35523 988 aa11.56□□□□□ -0.56
VPS53-206ENST00000570359 SYNE3Q6ZMZ3 975 aa11.56□□□□□ -0.56
VPS53-206ENST00000570359 SEPT12Q8IYM1 358 aa11.56□□□□□ -0.56
VPS53-206ENST00000570359 ZNF396Q96N95 335 aaPredicted RBP11.56□□□□□ -0.56
VPS53-206ENST00000570359 ZMYND15Q9H091 742 aa11.56□□□□□ -0.56
VPS53-206ENST00000570359 BSDC1Q9NW68 430 aaPredicted RBP11.56□□□□□ -0.56
VPS53-206ENST00000570359 KCNJ14Q9UNX9 436 aa11.56□□□□□ -0.56
VPS53-206ENST00000570359 MRVI1Q9Y6F6 885 aa11.56□□□□□ -0.56
VPS53-206ENST00000570359 ELP1O95163 1332 aa11.56□□□□□ -0.56
VPS53-206ENST00000570359 ERICH2A1L162 156 aa11.56□□□□□ -0.56
VPS53-206ENST00000570359 BIN1O00499 593 aa11.56□□□□□ -0.56
VPS53-206ENST00000570359 IARSP41252 1262 aaKnown RBP11.56□□□□□ -0.56
VPS53-206ENST00000570359 PPARAQ07869 468 aa11.56□□□□□ -0.56
VPS53-206ENST00000570359 WTAPQ15007 396 aa11.56□□□□□ -0.56
VPS53-206ENST00000570359 UBAC1Q9BSL1 405 aa11.56□□□□□ -0.56
VPS53-206ENST00000570359 ZMYM6O95789 1325 aa11.56□□□□□ -0.56
VPS53-206ENST00000570359 CYP2D6P10635 497 aa11.56□□□□□ -0.56
VPS53-206ENST00000570359 NFIXQ14938 502 aa11.56□□□□□ -0.56
VPS53-206ENST00000570359 TRAPPC3LQ5T215 181 aa11.56□□□□□ -0.56
VPS53-206ENST00000570359 DRC7Q8IY82 874 aa11.56□□□□□ -0.56
VPS53-206ENST00000570359 IGDCC4Q8TDY8 1250 aa11.56□□□□□ -0.56
VPS53-206ENST00000570359 PDLIM2Q96JY6 352 aa11.56□□□□□ -0.56
VPS53-206ENST00000570359 GJD4Q96KN9 370 aaPredicted RBP11.56□□□□□ -0.56
VPS53-206ENST00000570359 CLSTN2Q9H4D0 955 aa11.56□□□□□ -0.56
VPS53-206ENST00000570359 LRRC4BQ9NT99 713 aa11.56□□□□□ -0.56
VPS53-206ENST00000570359 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.55□□□□□ -0.56
VPS53-206ENST00000570359 NMT2O60551 498 aa11.55□□□□□ -0.56
VPS53-206ENST00000570359 KINO60870 393 aaKnown RBP11.55□□□□□ -0.56
VPS53-206ENST00000570359 TRIM37O94972 964 aa11.55□□□□□ -0.56
VPS53-206ENST00000570359 FAM47AQ5JRC9 791 aa11.55□□□□□ -0.56
VPS53-206ENST00000570359 SPECC1Q5M775 1068 aa11.55□□□□□ -0.56
VPS53-206ENST00000570359 FBXO18Q8NFZ0 1043 aa11.55□□□□□ -0.56
VPS53-206ENST00000570359 FUCA2Q9BTY2 467 aa11.55□□□□□ -0.56
VPS53-206ENST00000570359 PCDHA7Q9UN72 937 aa11.55□□□□□ -0.56
VPS53-206ENST00000570359 BAZ2AQ9UIF9 1905 aaKnown RBP11.55□□□□□ -0.56
VPS53-206ENST00000570359 CNTNAP4Q9C0A0 1308 aa11.55□□□□□ -0.56
VPS53-206ENST00000570359 HIBADHP31937 336 aaKnown RBP11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms