RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 ELL2O00472 640 aaPredicted RBP23.14■■□□□ 1.29
CLK3-227ENST00000570296 FLT3LGP49771 235 aa23.14■■□□□ 1.29
CLK3-227ENST00000570296 CCDC146Q8IYE0 955 aa23.14■■□□□ 1.29
CLK3-227ENST00000570296 UBE2OQ9C0C9 1292 aaKnown RBP23.14■■□□□ 1.29
CLK3-227ENST00000570296 EYSQ5T1H1 3165 aa23.13■■□□□ 1.29
CLK3-227ENST00000570296 MOGSQ13724 837 aa23.13■■□□□ 1.29
CLK3-227ENST00000570296 FAM83AQ86UY5 434 aa23.13■■□□□ 1.29
CLK3-227ENST00000570296 TDRD7Q8NHU6 1098 aaKnown RBP23.13■■□□□ 1.29
CLK3-227ENST00000570296 RUNDC1Q96C34 613 aa23.13■■□□□ 1.29
CLK3-227ENST00000570296 RPAP1Q9BWH6 1393 aaPredicted RBP23.13■■□□□ 1.29
CLK3-227ENST00000570296 FKBP1CQ5VVH2 108 aa23.12■■□□□ 1.29
CLK3-227ENST00000570296 GUCD1Q96NT3 240 aa23.12■■□□□ 1.29
CLK3-227ENST00000570296 ZNF341Q9BYN7 854 aa23.12■■□□□ 1.29
CLK3-227ENST00000570296 CASP7P55210 303 aa23.11■■□□□ 1.29
CLK3-227ENST00000570296 HDLBPQ00341 1268 aaKnown RBP23.11■■□□□ 1.29
CLK3-227ENST00000570296 TMOD2Q9NZR1 351 aa23.11■■□□□ 1.29
CLK3-227ENST00000570296 DOCK3Q8IZD9 2030 aa23.11■■□□□ 1.29
CLK3-227ENST00000570296 POTEB2H3BUK9 544 aa23.1■■□□□ 1.29
CLK3-227ENST00000570296 SYN1P17600 705 aa23.1■■□□□ 1.29
CLK3-227ENST00000570296 GCKRQ14397 625 aa23.1■■□□□ 1.29
CLK3-227ENST00000570296 NBPF3Q9H094 633 aa23.1■■□□□ 1.29
CLK3-227ENST00000570296 XRN2Q9H0D6 950 aaKnown RBP eCLIP23.1■■□□□ 1.29
CLK3-227ENST00000570296 IFT57Q9NWB7 429 aa23.1■■□□□ 1.29
CLK3-227ENST00000570296 PRUNE2Q8WUY3 3088 aa23.1■■□□□ 1.29
CLK3-227ENST00000570296 DDX60LQ5H9U9 1706 aaKnown RBP23.1■■□□□ 1.29
CLK3-227ENST00000570296 CYP2C8P10632 490 aa23.09■■□□□ 1.29
CLK3-227ENST00000570296 INPP5BP32019 993 aa23.09■■□□□ 1.29
CLK3-227ENST00000570296 CACNB3P54284 484 aa23.09■■□□□ 1.29
CLK3-227ENST00000570296 TNPO2O14787 897 aaKnown RBP23.08■■□□□ 1.29
CLK3-227ENST00000570296 IFIT5Q13325 482 aaKnown RBP23.08■■□□□ 1.29
CLK3-227ENST00000570296 GPAT2Q6NUI2 795 aa23.08■■□□□ 1.29
CLK3-227ENST00000570296 COL2A1P02458 1487 aaPredicted RBP23.07■■□□□ 1.28
CLK3-227ENST00000570296 GNAI1P63096 354 aa23.07■■□□□ 1.28
CLK3-227ENST00000570296 C8orf58Q8NAV2 365 aa23.07■■□□□ 1.28
CLK3-227ENST00000570296 TEKT1Q969V4 418 aa23.07■■□□□ 1.28
CLK3-227ENST00000570296 MUC3AQ02505 3323 aa23.06■■□□□ 1.28
CLK3-227ENST00000570296 CXCL11O14625 94 aa23.06■■□□□ 1.28
CLK3-227ENST00000570296 HIBADHP31937 336 aaKnown RBP23.06■■□□□ 1.28
CLK3-227ENST00000570296 MYH16Q9H6N6 1097 aa23.06■■□□□ 1.28
CLK3-227ENST00000570296 ZNF112Q9UJU3 913 aa23.06■■□□□ 1.28
CLK3-227ENST00000570296 NOL9Q5SY16 702 aaKnown RBP23.05■■□□□ 1.28
CLK3-227ENST00000570296 MIGA2Q7L4E1 593 aa23.05■■□□□ 1.28
CLK3-227ENST00000570296 ZDHHC15Q96MV8 337 aa23.05■■□□□ 1.28
CLK3-227ENST00000570296 C11orf49Q9H6J7 331 aa23.05■■□□□ 1.28
CLK3-227ENST00000570296 CALD1Q05682 793 aaKnown RBP23.04■■□□□ 1.28
CLK3-227ENST00000570296 MRIQ9BWK5 157 aa23.04■■□□□ 1.28
CLK3-227ENST00000570296 SLC45A1Q9Y2W3 748 aa23.04■■□□□ 1.28
CLK3-227ENST00000570296 PLIN1O60240 522 aa23.03■■□□□ 1.28
CLK3-227ENST00000570296 GYG1P46976 350 aa23.03■■□□□ 1.28
CLK3-227ENST00000570296 UBE4AQ14139 1066 aa23.03■■□□□ 1.28
CLK3-227ENST00000570296 FASTKD5Q7L8L6 764 aaKnown RBP23.03■■□□□ 1.28
CLK3-227ENST00000570296 TBC1D22AQ8WUA7 517 aa23.03■■□□□ 1.28
CLK3-227ENST00000570296 COA7Q96BR5 231 aa23.03■■□□□ 1.28
CLK3-227ENST00000570296 FAM84BQ96KN1 310 aaPredicted RBP23.03■■□□□ 1.28
CLK3-227ENST00000570296 TAOK2Q9UL54 1235 aa23.03■■□□□ 1.28
CLK3-227ENST00000570296 AK9Q5TCS8 1911 aa23.03■■□□□ 1.28
CLK3-227ENST00000570296 COL9A1P20849 921 aa23.02■■□□□ 1.28
CLK3-227ENST00000570296 GRIK5Q16478 980 aa23.02■■□□□ 1.28
CLK3-227ENST00000570296 STK31Q9BXU1 1019 aa23.02■■□□□ 1.28
CLK3-227ENST00000570296 HMGCRP04035 888 aa23.01■■□□□ 1.27
CLK3-227ENST00000570296 LDHAL6AQ6ZMR3 332 aa23.01■■□□□ 1.27
CLK3-227ENST00000570296 SYMPKQ92797 1274 aaKnown RBP23.01■■□□□ 1.27
CLK3-227ENST00000570296 FOXO4P98177 505 aa23■■□□□ 1.27
CLK3-227ENST00000570296 APOBEC3HQ6NTF7 200 aaKnown RBP23■■□□□ 1.27
CLK3-227ENST00000570296 FAM161BQ96MY7 647 aa23■■□□□ 1.27
CLK3-227ENST00000570296 CNNM1Q9NRU3 951 aa23■■□□□ 1.27
CLK3-227ENST00000570296 CHMP3Q9Y3E7 222 aa23■■□□□ 1.27
CLK3-227ENST00000570296 PTPRFP10586 1907 aa23■■□□□ 1.27
CLK3-227ENST00000570296 A0A0G2JLL6 359 aaPredicted RBP22.99■■□□□ 1.27
CLK3-227ENST00000570296 ZNF697Q5TEC3 545 aa22.99■■□□□ 1.27
CLK3-227ENST00000570296 PRRT2Q7Z6L0 340 aaPredicted RBP22.99■■□□□ 1.27
CLK3-227ENST00000570296 LINS1Q8NG48 757 aa22.99■■□□□ 1.27
CLK3-227ENST00000570296 MAFAQ8NHW3 353 aaPredicted RBP22.99■■□□□ 1.27
CLK3-227ENST00000570296 FAM151AQ8WW52 585 aa22.99■■□□□ 1.27
CLK3-227ENST00000570296 HMX1Q9NP08 348 aaPredicted RBP22.99■■□□□ 1.27
CLK3-227ENST00000570296 OGDHLQ9ULD0 1010 aa22.99■■□□□ 1.27
CLK3-227ENST00000570296 MAST3O60307 1309 aa22.99■■□□□ 1.27
CLK3-227ENST00000570296 RALBP1Q15311 655 aa22.98■■□□□ 1.27
CLK3-227ENST00000570296 SMCR8Q8TEV9 937 aaPredicted RBP22.98■■□□□ 1.27
CLK3-227ENST00000570296 WDR43Q15061 677 aaKnown RBP eCLIP22.97■■□□□ 1.27
CLK3-227ENST00000570296 CCDC57Q2TAC2 916 aa22.97■■□□□ 1.27
CLK3-227ENST00000570296 TAF7LQ5H9L4 462 aa22.97■■□□□ 1.27
CLK3-227ENST00000570296 PFASO15067 1338 aa22.97■■□□□ 1.27
CLK3-227ENST00000570296 HHIPL2Q6UWX4 724 aa22.96■■□□□ 1.27
CLK3-227ENST00000570296 G2E3Q7L622 706 aa22.96■■□□□ 1.27
CLK3-227ENST00000570296 TSPYL6Q8N831 410 aa22.96■■□□□ 1.27
CLK3-227ENST00000570296 ZNF594Q96JF6 807 aaPredicted RBP22.96■■□□□ 1.27
CLK3-227ENST00000570296 CDX2Q99626 313 aaPredicted RBP22.96■■□□□ 1.27
CLK3-227ENST00000570296 SUGT1Q9Y2Z0 365 aa22.96■■□□□ 1.27
CLK3-227ENST00000570296 CDH23Q9H251 3354 aa22.96■■□□□ 1.27
CLK3-227ENST00000570296 MDM2Q00987 491 aaPredicted RBP22.95■■□□□ 1.26
CLK3-227ENST00000570296 CHAF1AQ13111 956 aaPredicted RBP22.95■■□□□ 1.26
CLK3-227ENST00000570296 GADL1Q6ZQY3 521 aa22.95■■□□□ 1.26
CLK3-227ENST00000570296 VPS37DQ86XT2 251 aa22.95■■□□□ 1.26
CLK3-227ENST00000570296 FAM110CQ1W6H9 321 aa22.94■■□□□ 1.26
CLK3-227ENST00000570296 LMBR1LQ6UX01 489 aa22.94■■□□□ 1.26
CLK3-227ENST00000570296 FBXO33Q7Z6M2 555 aa22.94■■□□□ 1.26
CLK3-227ENST00000570296 DNAAF4Q8WXU2 420 aa22.94■■□□□ 1.26
CLK3-227ENST00000570296 ZHX2Q9Y6X8 837 aa22.94■■□□□ 1.26
CLK3-227ENST00000570296 CACNA1FO60840 1977 aa22.93■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms