RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 SLC9C2Q5TAH2 1124 aa11.27□□□□□ -0.61
VPS35-211ENST00000569950 CDC42EP5Q6NZY7 148 aa11.27□□□□□ -0.61
VPS35-211ENST00000569950 DLK2Q6UY11 383 aa11.27□□□□□ -0.61
VPS35-211ENST00000569950 OSBP2Q969R2 916 aa11.27□□□□□ -0.61
VPS35-211ENST00000569950 TEKT1Q969V4 418 aa11.27□□□□□ -0.61
VPS35-211ENST00000569950 SEC62Q99442 399 aaKnown RBP11.27□□□□□ -0.61
VPS35-211ENST00000569950 PUS7LQ9H0K6 701 aaKnown RBP11.27□□□□□ -0.61
VPS35-211ENST00000569950 RAI14Q9P0K7 980 aa11.27□□□□□ -0.61
VPS35-211ENST00000569950 MAST3O60307 1309 aa11.27□□□□□ -0.61
VPS35-211ENST00000569950 SSC5DA1L4H1 1573 aa11.26□□□□□ -0.61
VPS35-211ENST00000569950 A0A0D9SFI3 127 aa11.26□□□□□ -0.61
VPS35-211ENST00000569950 M0R2C6 588 aa11.26□□□□□ -0.61
VPS35-211ENST00000569950 RNF113AO15541 343 aaKnown RBP11.26□□□□□ -0.61
VPS35-211ENST00000569950 WDHD1O75717 1129 aaPredicted RBP11.26□□□□□ -0.61
VPS35-211ENST00000569950 CYP7A1P22680 504 aa11.26□□□□□ -0.61
VPS35-211ENST00000569950 C1QBPQ07021 282 aaKnown RBP11.26□□□□□ -0.61
VPS35-211ENST00000569950 MAP3K12Q12852 859 aa11.26□□□□□ -0.61
VPS35-211ENST00000569950 NAA16Q6N069 864 aaPredicted RBP11.26□□□□□ -0.61
VPS35-211ENST00000569950 USP50Q70EL3 339 aaPredicted RBP11.26□□□□□ -0.61
VPS35-211ENST00000569950 DZIP1Q86YF9 867 aaKnown RBP11.26□□□□□ -0.61
VPS35-211ENST00000569950 FAM227BQ96M60 508 aa11.26□□□□□ -0.61
VPS35-211ENST00000569950 DDX4Q9NQI0 724 aaKnown RBP11.26□□□□□ -0.61
VPS35-211ENST00000569950 MKRN1Q9UHC7 482 aaKnown RBP11.26□□□□□ -0.61
VPS35-211ENST00000569950 TRPM7Q96QT4 1865 aa11.25□□□□□ -0.61
VPS35-211ENST00000569950 IQCA1LA6NCM1 817 aa11.25□□□□□ -0.61
VPS35-211ENST00000569950 H7C1D1 291 aa11.25□□□□□ -0.61
VPS35-211ENST00000569950 BTDP43251 543 aa11.25□□□□□ -0.61
VPS35-211ENST00000569950 CACNB3P54284 484 aa11.25□□□□□ -0.61
VPS35-211ENST00000569950 NFIAQ12857 509 aa11.25□□□□□ -0.61
VPS35-211ENST00000569950 RBM26Q5T8P6 1007 aaKnown RBP11.25□□□□□ -0.61
VPS35-211ENST00000569950 TMED8Q6PL24 325 aaPredicted RBP11.25□□□□□ -0.61
VPS35-211ENST00000569950 TICAM2Q86XR7 235 aa11.25□□□□□ -0.61
VPS35-211ENST00000569950 CDAN1Q8IWY9 1227 aa11.25□□□□□ -0.61
VPS35-211ENST00000569950 LCORLQ8N3X6 602 aa11.25□□□□□ -0.61
VPS35-211ENST00000569950 OGFOD1Q8N543 542 aa11.25□□□□□ -0.61
VPS35-211ENST00000569950 MIGA1Q8NAN2 632 aa11.25□□□□□ -0.61
VPS35-211ENST00000569950 TDRD3Q9H7E2 651 aaKnown RBP11.25□□□□□ -0.61
VPS35-211ENST00000569950 ZNF70Q9UC06 446 aaPredicted RBP11.25□□□□□ -0.61
VPS35-211ENST00000569950 FAM198AQ9UFP1 575 aa11.25□□□□□ -0.61
VPS35-211ENST00000569950 SCAF8Q9UPN6 1271 aaKnown RBP11.25□□□□□ -0.61
VPS35-211ENST00000569950 LAMB1P07942 1786 aa11.25□□□□□ -0.61
VPS35-211ENST00000569950 LAMA4Q16363 1823 aa11.24□□□□□ -0.61
VPS35-211ENST00000569950 CLRN2A0PK11 232 aa11.24□□□□□ -0.61
VPS35-211ENST00000569950 CHMLP26374 656 aa11.24□□□□□ -0.61
VPS35-211ENST00000569950 LMOD1P29536 600 aaPredicted RBP11.24□□□□□ -0.61
VPS35-211ENST00000569950 NMIQ13287 307 aaPredicted RBP11.24□□□□□ -0.61
VPS35-211ENST00000569950 DLGAP5Q15398 846 aa11.24□□□□□ -0.61
VPS35-211ENST00000569950 ANGEL2Q5VTE6 544 aaKnown RBP11.24□□□□□ -0.61
VPS35-211ENST00000569950 ZNF589Q86UQ0 364 aaPredicted RBP11.24□□□□□ -0.61
VPS35-211ENST00000569950 ZFPM1Q8IX07 1006 aa11.24□□□□□ -0.61
VPS35-211ENST00000569950 CNTROBQ8N137 903 aa11.24□□□□□ -0.61
VPS35-211ENST00000569950 SH3RF3Q8TEJ3 882 aaPredicted RBP11.24□□□□□ -0.61
VPS35-211ENST00000569950 APPBP2Q92624 585 aa11.24□□□□□ -0.61
VPS35-211ENST00000569950 FSD1Q9BTV5 496 aa11.24□□□□□ -0.61
VPS35-211ENST00000569950 GPBP1L1Q9HC44 474 aaPredicted RBP11.24□□□□□ -0.61
VPS35-211ENST00000569950 AATFQ9NY61 560 aaKnown RBP eCLIP11.24□□□□□ -0.61
VPS35-211ENST00000569950 GGA3Q9NZ52 723 aa11.24□□□□□ -0.61
VPS35-211ENST00000569950 HDAC9Q9UKV0 1011 aa11.24□□□□□ -0.61
VPS35-211ENST00000569950 OTOFQ9HC10 1997 aa11.24□□□□□ -0.61
VPS35-211ENST00000569950 ATRNL1Q5VV63 1379 aa11.24□□□□□ -0.61
VPS35-211ENST00000569950 TRIM6-TRIM34B2RNG4 842 aa11.23□□□□□ -0.61
VPS35-211ENST00000569950 PRKAB2O43741 272 aa11.23□□□□□ -0.61
VPS35-211ENST00000569950 ITGBL1O95965 494 aaPredicted RBP11.23□□□□□ -0.61
VPS35-211ENST00000569950 GSTO1P78417 241 aa11.23□□□□□ -0.61
VPS35-211ENST00000569950 EVX2Q03828 476 aa11.23□□□□□ -0.61
VPS35-211ENST00000569950 FMR1Q06787 632 aaKnown RBP eCLIP11.23□□□□□ -0.613e-7■□□□□ 8.4
VPS35-211ENST00000569950 CCDC129Q6ZRS4 1044 aa11.23□□□□□ -0.61
VPS35-211ENST00000569950 SH3BP5LQ7L8J4 393 aa11.23□□□□□ -0.61
VPS35-211ENST00000569950 ZC3H15Q8WU90 426 aaKnown RBP11.23□□□□□ -0.61
VPS35-211ENST00000569950 RILPL2Q969X0 211 aa11.23□□□□□ -0.61
VPS35-211ENST00000569950 TEPSINQ96N21 525 aa11.23□□□□□ -0.61
VPS35-211ENST00000569950 STRBPQ96SI9 672 aaKnown RBP11.23□□□□□ -0.61
VPS35-211ENST00000569950 IDI2Q9BXS1 227 aa11.23□□□□□ -0.61
VPS35-211ENST00000569950 ARMT1Q9H993 441 aa11.23□□□□□ -0.61
VPS35-211ENST00000569950 PITPNM2Q9BZ72 1349 aa11.23□□□□□ -0.61
VPS35-211ENST00000569950 RPAP1Q9BWH6 1393 aaPredicted RBP11.23□□□□□ -0.61
VPS35-211ENST00000569950 COL2A1P02458 1487 aaPredicted RBP11.23□□□□□ -0.61
VPS35-211ENST00000569950 SMIM22K7EJ46 135 aa11.22□□□□□ -0.61
VPS35-211ENST00000569950 MBD4O95243 580 aa11.22□□□□□ -0.61
VPS35-211ENST00000569950 LDHCP07864 332 aa11.22□□□□□ -0.61
VPS35-211ENST00000569950 ZFYP08048 801 aaPredicted RBP11.22□□□□□ -0.61
VPS35-211ENST00000569950 KCNA4P22459 653 aa11.22□□□□□ -0.61
VPS35-211ENST00000569950 VPS53Q5VIR6 699 aa11.22□□□□□ -0.61
VPS35-211ENST00000569950 FKBP1CQ5VVH2 108 aa11.22□□□□□ -0.61
VPS35-211ENST00000569950 PNMA8AQ86V59 439 aaPredicted RBP11.22□□□□□ -0.61
VPS35-211ENST00000569950 LDHDQ86WU2 507 aa11.22□□□□□ -0.61
VPS35-211ENST00000569950 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.22□□□□□ -0.61
VPS35-211ENST00000569950 EPB41L4AQ9HCS5 686 aaPredicted RBP11.22□□□□□ -0.61
VPS35-211ENST00000569950 USP40Q9NVE5 1235 aa11.22□□□□□ -0.61
VPS35-211ENST00000569950 PASKQ96RG2 1323 aa11.21□□□□□ -0.61
VPS35-211ENST00000569950 MAGEB6P1A0A0J9YX57 407 aa11.21□□□□□ -0.61
VPS35-211ENST00000569950 GSG1L2A8MUP6 293 aa11.21□□□□□ -0.61
VPS35-211ENST00000569950 ADM5C9JUS6 153 aa11.21□□□□□ -0.61
VPS35-211ENST00000569950 GPAA1O43292 621 aa11.21□□□□□ -0.61
VPS35-211ENST00000569950 SLURP2P0DP57 97 aa11.21□□□□□ -0.61
VPS35-211ENST00000569950 RBM5P52756 815 aaKnown RBP eCLIP11.21□□□□□ -0.61
VPS35-211ENST00000569950 EAPPQ56P03 285 aaPredicted RBP11.21□□□□□ -0.61
VPS35-211ENST00000569950 MAP1SQ66K74 1059 aaPredicted RBP11.21□□□□□ -0.61
VPS35-211ENST00000569950 GLIS2Q9BZE0 524 aaPredicted RBP11.21□□□□□ -0.61
VPS35-211ENST00000569950 HELLSQ9NRZ9 838 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms