RNA–Protein interactions for RNA: ENST00000569794.1

CHD9-220, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 5

Gene CHD9, Length 485 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-220ENST00000569794 PDE3AQ14432 1141 aa9.51□□□□□ -0.89
CHD9-220ENST00000569794 ZNF574Q6ZN55 896 aaPredicted RBP9.51□□□□□ -0.89
CHD9-220ENST00000569794 SPRED2Q7Z698 418 aa9.51□□□□□ -0.89
CHD9-220ENST00000569794 STK11IPQ8N1F8 1099 aa9.51□□□□□ -0.89
CHD9-220ENST00000569794 EHD4Q9H223 541 aa9.51□□□□□ -0.89
CHD9-220ENST00000569794 EGFL7Q9UHF1 273 aa9.51□□□□□ -0.89
CHD9-220ENST00000569794 ICMTO60725 284 aa9.5□□□□□ -0.89
CHD9-220ENST00000569794 NEFLP07196 543 aa9.5□□□□□ -0.89
CHD9-220ENST00000569794 AP3B2Q13367 1082 aa9.5□□□□□ -0.89
CHD9-220ENST00000569794 PLCL1Q15111 1095 aa9.5□□□□□ -0.89
CHD9-220ENST00000569794 BRPF3Q9ULD4 1205 aa9.5□□□□□ -0.89
CHD9-220ENST00000569794 PTPN12Q05209 780 aaKnown RBP9.49□□□□□ -0.89
CHD9-220ENST00000569794 ZNF792Q3KQV3 632 aa9.49□□□□□ -0.89
CHD9-220ENST00000569794 ECM1Q16610 540 aa9.48□□□□□ -0.89
CHD9-220ENST00000569794 CYP27C1Q4G0S4 372 aa9.48□□□□□ -0.89
CHD9-220ENST00000569794 MISP3Q96FF7 219 aa9.48□□□□□ -0.89
CHD9-220ENST00000569794 NPHS2Q9NP85 383 aa9.48□□□□□ -0.89
CHD9-220ENST00000569794 TMPRSS2O15393 492 aa9.47□□□□□ -0.89
CHD9-220ENST00000569794 CPNE3O75131 537 aaKnown RBP9.47□□□□□ -0.89
CHD9-220ENST00000569794 ORC1Q13415 861 aa9.47□□□□□ -0.89
CHD9-220ENST00000569794 ABCB6Q9NP58 842 aa9.47□□□□□ -0.89
CHD9-220ENST00000569794 CRIM1Q9NZV1 1036 aa9.47□□□□□ -0.89
CHD9-220ENST00000569794 H3BRB1 525 aa9.46□□□□□ -0.9
CHD9-220ENST00000569794 BNIP3Q12983 259 aa9.46□□□□□ -0.9
CHD9-220ENST00000569794 CDK5R2Q13319 367 aa9.46□□□□□ -0.9
CHD9-220ENST00000569794 WDR89Q96FK6 387 aaPredicted RBP9.46□□□□□ -0.9
CHD9-220ENST00000569794 TUT1Q9H6E5 874 aaKnown RBP9.46□□□□□ -0.9
CHD9-220ENST00000569794 CCDC86Q9H6F5 360 aaKnown RBP9.46□□□□□ -0.9
CHD9-220ENST00000569794 FAM87AP0C7U9 286 aa9.45□□□□□ -0.9
CHD9-220ENST00000569794 LIG1P18858 919 aa9.45□□□□□ -0.9
CHD9-220ENST00000569794 RPS26P11Q5JNZ5 115 aaPredicted RBP9.45□□□□□ -0.9
CHD9-220ENST00000569794 PRPF40BQ6NWY9 871 aaKnown RBP9.45□□□□□ -0.9
CHD9-220ENST00000569794 PLD6Q8N2A8 252 aaKnown RBP9.45□□□□□ -0.9
CHD9-220ENST00000569794 FAM129BQ96TA1 746 aa9.45□□□□□ -0.9
CHD9-220ENST00000569794 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.45□□□□□ -0.9
CHD9-220ENST00000569794 BIN1O00499 593 aa9.44□□□□□ -0.9
CHD9-220ENST00000569794 ARHGAP4P98171 946 aa9.44□□□□□ -0.9
CHD9-220ENST00000569794 PDE3BQ13370 1112 aa9.44□□□□□ -0.9
CHD9-220ENST00000569794 GLYCTKQ8IVS8 523 aa9.44□□□□□ -0.9
CHD9-220ENST00000569794 FAM181AQ8N9Y4 354 aa9.44□□□□□ -0.9
CHD9-220ENST00000569794 NETO1Q8TDF5 533 aa9.44□□□□□ -0.9
CHD9-220ENST00000569794 FANCD2OSQ96PS1 177 aa9.44□□□□□ -0.9
CHD9-220ENST00000569794 ATXN3LQ9H3M9 355 aa9.44□□□□□ -0.9
CHD9-220ENST00000569794 PIDD1Q9HB75 910 aa9.44□□□□□ -0.9
CHD9-220ENST00000569794 CARMIL2Q6F5E8 1435 aa9.44□□□□□ -0.9
CHD9-220ENST00000569794 NDUFB5O43674 189 aa9.43□□□□□ -0.9
CHD9-220ENST00000569794 ID3Q02535 119 aa9.43□□□□□ -0.9
CHD9-220ENST00000569794 FAAP100Q0VG06 881 aa9.43□□□□□ -0.9
CHD9-220ENST00000569794 TMEM238LA0A1B0GVL6 79 aa9.42□□□□□ -0.9
CHD9-220ENST00000569794 ZNF862O60290 1169 aa9.42□□□□□ -0.9
CHD9-220ENST00000569794 SLFN14P0C7P3 912 aa9.42□□□□□ -0.9
CHD9-220ENST00000569794 CD8BP10966 210 aa9.42□□□□□ -0.9
CHD9-220ENST00000569794 FUT4P22083 530 aa9.42□□□□□ -0.9
CHD9-220ENST00000569794 SERPINB4P48594 390 aa9.42□□□□□ -0.9
CHD9-220ENST00000569794 ZNF648Q5T619 568 aaPredicted RBP9.42□□□□□ -0.9
CHD9-220ENST00000569794 ATG4DQ86TL0 474 aaPredicted RBP9.42□□□□□ -0.9
CHD9-220ENST00000569794 CCDC74AQ96AQ1 378 aa9.42□□□□□ -0.9
CHD9-220ENST00000569794 ZC3H12CQ9C0D7 883 aaKnown RBP9.42□□□□□ -0.9
CHD9-220ENST00000569794 DISC1Q9NRI5 854 aa9.42□□□□□ -0.9
CHD9-220ENST00000569794 PCDHGC5Q9Y5F6 944 aa9.42□□□□□ -0.9
CHD9-220ENST00000569794 ZNF157P51786 506 aaPredicted RBP9.41□□□□□ -0.9
CHD9-220ENST00000569794 KIF4BQ2VIQ3 1234 aa9.41□□□□□ -0.9
CHD9-220ENST00000569794 SMYD4Q8IYR2 804 aaPredicted RBP9.41□□□□□ -0.9
CHD9-220ENST00000569794 GLIS3Q8NEA6 775 aa9.41□□□□□ -0.9
CHD9-220ENST00000569794 U3KQE9 123 aa9.41□□□□□ -0.9
CHD9-220ENST00000569794 EIF1AYO14602 144 aaKnown RBP9.4□□□□□ -0.9
CHD9-220ENST00000569794 DNAJC25Q9H1X3 360 aa9.4□□□□□ -0.9
CHD9-220ENST00000569794 KRT82Q9NSB4 513 aa9.4□□□□□ -0.9
CHD9-220ENST00000569794 MBNL3Q9NUK0 354 aaKnown RBP9.4□□□□□ -0.9
CHD9-220ENST00000569794 ADAMTS6Q9UKP5 1117 aa9.4□□□□□ -0.9
CHD9-220ENST00000569794 VAV3Q9UKW4 847 aa9.4□□□□□ -0.9
CHD9-220ENST00000569794 GADD45BO75293 160 aaPredicted RBP9.39□□□□□ -0.91
CHD9-220ENST00000569794 IGHA2P01877 340 aa9.39□□□□□ -0.91
CHD9-220ENST00000569794 RNASE1P07998 156 aaKnown RBP9.39□□□□□ -0.91
CHD9-220ENST00000569794 GSTP1P09211 210 aaKnown RBP9.39□□□□□ -0.91
CHD9-220ENST00000569794 PRKCQQ04759 706 aa9.39□□□□□ -0.91
CHD9-220ENST00000569794 B4GALNT3Q6L9W6 998 aa9.39□□□□□ -0.91
CHD9-220ENST00000569794 CITED4Q96RK1 184 aa9.39□□□□□ -0.91
CHD9-220ENST00000569794 C1orf115Q9H7X2 142 aa9.39□□□□□ -0.91
CHD9-220ENST00000569794 RC3H2Q9HBD1 1191 aaKnown RBP9.39□□□□□ -0.91
CHD9-220ENST00000569794 TRAK1Q9UPV9 953 aa9.39□□□□□ -0.91
CHD9-220ENST00000569794 LEFTY1O75610 366 aa9.38□□□□□ -0.91
CHD9-220ENST00000569794 GRM2Q14416 872 aa9.38□□□□□ -0.91
CHD9-220ENST00000569794 TTLL4Q14679 1199 aa9.38□□□□□ -0.91
CHD9-220ENST00000569794 MKNK2Q9HBH9 465 aa9.38□□□□□ -0.91
CHD9-220ENST00000569794 USTQ9Y2C2 406 aa9.38□□□□□ -0.91
CHD9-220ENST00000569794 GPR182O15218 404 aa9.37□□□□□ -0.91
CHD9-220ENST00000569794 CD96P40200 585 aa9.37□□□□□ -0.91
CHD9-220ENST00000569794 IFI16Q16666 785 aaKnown RBP9.37□□□□□ -0.91
CHD9-220ENST00000569794 FAM168AQ92567 244 aa9.37□□□□□ -0.91
CHD9-220ENST00000569794 DUSP23Q9BVJ7 150 aa9.37□□□□□ -0.91
CHD9-220ENST00000569794 RNGTTO60942 597 aaKnown RBP9.36□□□□□ -0.91
CHD9-220ENST00000569794 HCLS1P14317 486 aaPredicted RBP9.36□□□□□ -0.91
CHD9-220ENST00000569794 OXCT1P55809 520 aa9.36□□□□□ -0.91
CHD9-220ENST00000569794 HNRNPUQ00839 825 aaKnown RBP eCLIP9.36□□□□□ -0.91
CHD9-220ENST00000569794 ZNF124Q15973 351 aa9.36□□□□□ -0.91
CHD9-220ENST00000569794 PDZD3Q86UT5 571 aa9.36□□□□□ -0.91
CHD9-220ENST00000569794 NIF3L1Q9GZT8 377 aa9.36□□□□□ -0.91
CHD9-220ENST00000569794 CEACAM5P06731 702 aa9.35□□□□□ -0.91
CHD9-220ENST00000569794 LRRN4CLQ8ND94 238 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms