RNA–Protein interactions for RNA: ENST00000568452.6

CLN3-233, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,616 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-233ENST00000568452 FGD1P98174 961 aa22.5■■□□□ 1.19
CLN3-233ENST00000568452 EXOSC10Q01780 885 aaKnown RBP22.5■■□□□ 1.19
CLN3-233ENST00000568452 DOK7Q18PE1 504 aa22.5■■□□□ 1.19
CLN3-233ENST00000568452 AATFQ9NY61 560 aaKnown RBP eCLIP22.5■■□□□ 1.19
CLN3-233ENST00000568452 SNED1Q8TER0 1413 aa22.5■■□□□ 1.19
CLN3-233ENST00000568452 WDR19Q8NEZ3 1342 aa22.5■■□□□ 1.19
CLN3-233ENST00000568452 KCNA3P22001 575 aa22.49■■□□□ 1.19
CLN3-233ENST00000568452 PPP4CP60510 307 aa22.49■■□□□ 1.19
CLN3-233ENST00000568452 TOB2Q14106 344 aaPredicted RBP22.49■■□□□ 1.19
CLN3-233ENST00000568452 SOGA3Q5TF21 947 aa22.49■■□□□ 1.19
CLN3-233ENST00000568452 Q6ZUG5 572 aa22.49■■□□□ 1.19
CLN3-233ENST00000568452 MROH7-TTC4A0A0A0MT08 1334 aa22.49■■□□□ 1.19
CLN3-233ENST00000568452 C21orf2O43822 256 aa22.49■■□□□ 1.19
CLN3-233ENST00000568452 MCM5P33992 734 aa22.49■■□□□ 1.19
CLN3-233ENST00000568452 SDR42E1Q8WUS8 393 aa22.49■■□□□ 1.19
CLN3-233ENST00000568452 TCEANC2Q96MN5 208 aa22.49■■□□□ 1.19
CLN3-233ENST00000568452 ATP8A2Q9NTI2 1148 aa22.49■■□□□ 1.19
CLN3-233ENST00000568452 ZSCAN21Q9Y5A6 473 aaPredicted RBP22.49■■□□□ 1.19
CLN3-233ENST00000568452 COL9A3Q14050 684 aaPredicted RBP22.48■■□□□ 1.19
CLN3-233ENST00000568452 GRIK5Q16478 980 aa22.48■■□□□ 1.19
CLN3-233ENST00000568452 MB21D2Q8IYB1 491 aaPredicted RBP22.48■■□□□ 1.19
CLN3-233ENST00000568452 FBXL16Q8N461 479 aa22.48■■□□□ 1.19
CLN3-233ENST00000568452 FAM163AQ96GL9 167 aaPredicted RBP22.48■■□□□ 1.19
CLN3-233ENST00000568452 AGXT2Q9BYV1 514 aa22.48■■□□□ 1.19
CLN3-233ENST00000568452 CNNM2Q9H8M5 875 aa22.48■■□□□ 1.19
CLN3-233ENST00000568452 KIAA2012Q0VF49 1180 aa22.47■■□□□ 1.19
CLN3-233ENST00000568452 TBC1D10CQ8IV04 446 aa22.47■■□□□ 1.19
CLN3-233ENST00000568452 FBXW7Q969H0 707 aa22.47■■□□□ 1.19
CLN3-233ENST00000568452 NBPF3Q9H094 633 aa22.47■■□□□ 1.19
CLN3-233ENST00000568452 RNF41Q9H4P4 317 aaPredicted RBP22.47■■□□□ 1.19
CLN3-233ENST00000568452 PIM2Q9P1W9 311 aa22.47■■□□□ 1.19
CLN3-233ENST00000568452 ANAPC4Q9UJX5 808 aa22.47■■□□□ 1.19
CLN3-233ENST00000568452 TPCN1Q9ULQ1 816 aa22.47■■□□□ 1.19
CLN3-233ENST00000568452 TIAM2Q8IVF5 1701 aa22.47■■□□□ 1.19
CLN3-233ENST00000568452 PLCG2P16885 1265 aa22.46■■□□□ 1.19
CLN3-233ENST00000568452 FKBP1AP62942 108 aaKnown RBP22.46■■□□□ 1.19
CLN3-233ENST00000568452 NUCB2P80303 420 aa22.46■■□□□ 1.19
CLN3-233ENST00000568452 AKNAD1Q5T1N1 836 aa22.46■■□□□ 1.19
CLN3-233ENST00000568452 PSMD1Q99460 953 aa22.46■■□□□ 1.19
CLN3-233ENST00000568452 LARP6Q9BRS8 491 aaKnown RBP22.46■■□□□ 1.19
CLN3-233ENST00000568452 KRT23Q9C075 422 aa22.46■■□□□ 1.19
CLN3-233ENST00000568452 PPP1R1BQ9UD71 204 aaPredicted RBP22.46■■□□□ 1.19
CLN3-233ENST00000568452 DIXDC1Q155Q3 683 aa22.46■■□□□ 1.19
CLN3-233ENST00000568452 ME3Q16798 604 aa22.46■■□□□ 1.19
CLN3-233ENST00000568452 KLHL34Q8N239 644 aa22.46■■□□□ 1.19
CLN3-233ENST00000568452 STAG1Q8WVM7 1258 aa22.46■■□□□ 1.19
CLN3-233ENST00000568452 DBNDD1Q9H9R9 158 aa22.46■■□□□ 1.19
CLN3-233ENST00000568452 PRC1O43663 620 aa22.45■■□□□ 1.18
CLN3-233ENST00000568452 ECE2O60344 883 aa22.45■■□□□ 1.18
CLN3-233ENST00000568452 LARGE1O95461 756 aa22.45■■□□□ 1.18
CLN3-233ENST00000568452 PPARAQ07869 468 aa22.45■■□□□ 1.18
CLN3-233ENST00000568452 MFSD6Q6ZSS7 791 aa22.45■■□□□ 1.18
CLN3-233ENST00000568452 BRF1Q92994 677 aa22.45■■□□□ 1.18
CLN3-233ENST00000568452 CD2APQ9Y5K6 639 aa22.45■■□□□ 1.18
CLN3-233ENST00000568452 CHD4Q14839 1912 aa22.45■■□□□ 1.18
CLN3-233ENST00000568452 GPR75-ASB3A0A0A6YYF3 556 aa22.44■■□□□ 1.18
CLN3-233ENST00000568452 CTDSPL2Q05D32 466 aa22.44■■□□□ 1.18
CLN3-233ENST00000568452 STRIP1Q5VSL9 837 aa22.44■■□□□ 1.18
CLN3-233ENST00000568452 CHMP4CQ96CF2 233 aa22.44■■□□□ 1.18
CLN3-233ENST00000568452 VPS33BQ9H267 617 aa22.44■■□□□ 1.18
CLN3-233ENST00000568452 DCP1AQ9NPI6 582 aaPredicted RBP22.44■■□□□ 1.18
CLN3-233ENST00000568452 GAKO14976 1311 aa22.44■■□□□ 1.18
CLN3-233ENST00000568452 PPIP5K2O43314 1243 aa22.43■■□□□ 1.18
CLN3-233ENST00000568452 PCP11498 1178 aaKnown RBP22.43■■□□□ 1.18
CLN3-233ENST00000568452 AOC3Q16853 763 aa22.43■■□□□ 1.18
CLN3-233ENST00000568452 CCDC83Q8IWF9 413 aa22.43■■□□□ 1.18
CLN3-233ENST00000568452 ARPP21Q9UBL0 812 aaPredicted RBP22.43■■□□□ 1.18
CLN3-233ENST00000568452 MYH2Q9UKX2 1941 aa22.43■■□□□ 1.18
CLN3-233ENST00000568452 MINDY4BA8MYZ0 360 aa22.42■■□□□ 1.18
CLN3-233ENST00000568452 BTDP43251 543 aa22.42■■□□□ 1.18
CLN3-233ENST00000568452 RAB3GAP1Q15042 981 aa22.42■■□□□ 1.18
CLN3-233ENST00000568452 SBK1Q52WX2 424 aa22.42■■□□□ 1.18
CLN3-233ENST00000568452 LRRC2Q9BYS8 371 aa22.42■■□□□ 1.18
CLN3-233ENST00000568452 USP5P45974 858 aa22.42■■□□□ 1.18
CLN3-233ENST00000568452 DALRD3Q5D0E6 543 aaKnown RBP22.42■■□□□ 1.18
CLN3-233ENST00000568452 CTR9Q6PD62 1173 aa22.42■■□□□ 1.18
CLN3-233ENST00000568452 CERS5Q8N5B7 392 aa22.42■■□□□ 1.18
CLN3-233ENST00000568452 TMEM87BQ96K49 555 aa22.42■■□□□ 1.18
CLN3-233ENST00000568452 SMC3Q9UQE7 1217 aa22.42■■□□□ 1.18
CLN3-233ENST00000568452 NEDD4P46934 1319 aa22.42■■□□□ 1.18
CLN3-233ENST00000568452 USP17L3A6NCW0 530 aa22.41■■□□□ 1.18
CLN3-233ENST00000568452 USP17L4A6NCW7 530 aa22.41■■□□□ 1.18
CLN3-233ENST00000568452 B4E1Z4 1266 aa22.41■■□□□ 1.18
CLN3-233ENST00000568452 SLC3A2P08195 630 aaKnown RBP22.41■■□□□ 1.18
CLN3-233ENST00000568452 USP17L1Q7RTZ2 530 aa22.41■■□□□ 1.18
CLN3-233ENST00000568452 AMOTL1Q8IY63 956 aa22.41■■□□□ 1.18
CLN3-233ENST00000568452 SH3RF3Q8TEJ3 882 aaPredicted RBP22.41■■□□□ 1.18
CLN3-233ENST00000568452 ZNF274Q96GC6 653 aaPredicted RBP22.41■■□□□ 1.18
CLN3-233ENST00000568452 TTF2Q9UNY4 1162 aaKnown RBP22.41■■□□□ 1.18
CLN3-233ENST00000568452 USP17L12C9JPN9 530 aa22.4■■□□□ 1.18
CLN3-233ENST00000568452 USP17L21D6R901 530 aa22.4■■□□□ 1.18
CLN3-233ENST00000568452 EVCP57679 992 aa22.4■■□□□ 1.18
CLN3-233ENST00000568452 ANTXR2P58335 489 aa22.4■■□□□ 1.18
CLN3-233ENST00000568452 CHST3Q7LGC8 479 aa22.4■■□□□ 1.18
CLN3-233ENST00000568452 MTA3Q9BTC8 594 aa22.4■■□□□ 1.18
CLN3-233ENST00000568452 NECAB1Q8N987 351 aa22.39■■□□□ 1.18
CLN3-233ENST00000568452 PFKFB2O60825 505 aa22.39■■□□□ 1.17
CLN3-233ENST00000568452 APOBRQ0VD83 1088 aa22.39■■□□□ 1.17
CLN3-233ENST00000568452 DACT2Q5SW24 774 aa22.39■■□□□ 1.17
CLN3-233ENST00000568452 HHIPL2Q6UWX4 724 aa22.39■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms