RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 LLGL2Q6P1M3 1020 aa7.37□□□□□ -1.23
LINC00560-201ENST00000564593 GOLM1Q8NBJ4 401 aa7.37□□□□□ -1.23
LINC00560-201ENST00000564593 GPRASP2Q96D09 838 aa7.37□□□□□ -1.23
LINC00560-201ENST00000564593 CARD10Q9BWT7 1032 aa7.37□□□□□ -1.23
LINC00560-201ENST00000564593 OSGEPQ9NPF4 335 aa7.37□□□□□ -1.23
LINC00560-201ENST00000564593 PPP1R1BQ9UD71 204 aaPredicted RBP7.37□□□□□ -1.23
LINC00560-201ENST00000564593 SUPT16HQ9Y5B9 1047 aaKnown RBP7.37□□□□□ -1.23
LINC00560-201ENST00000564593 NID1P14543 1247 aa7.37□□□□□ -1.23
LINC00560-201ENST00000564593 DNAJA1P31689 397 aaKnown RBP7.37□□□□□ -1.23
LINC00560-201ENST00000564593 GJA8P48165 433 aa7.37□□□□□ -1.23
LINC00560-201ENST00000564593 GRIN3AQ8TCU5 1115 aa7.37□□□□□ -1.23
LINC00560-201ENST00000564593 TANGO6Q9C0B7 1094 aa7.37□□□□□ -1.23
LINC00560-201ENST00000564593 MIR1-1HGQ9H1L0 117 aa7.37□□□□□ -1.23
LINC00560-201ENST00000564593 PRKAG2Q9UGJ0 569 aa7.37□□□□□ -1.23
LINC00560-201ENST00000564593 PCDHB5Q9Y5E4 795 aa7.37□□□□□ -1.23
LINC00560-201ENST00000564593 SCO2A0A1W2PP80 73 aa7.36□□□□□ -1.23
LINC00560-201ENST00000564593 CYP11A1P05108 521 aa7.36□□□□□ -1.23
LINC00560-201ENST00000564593 ARID5AQ03989 594 aa7.36□□□□□ -1.23
LINC00560-201ENST00000564593 COL9A3Q14050 684 aaPredicted RBP7.36□□□□□ -1.23
LINC00560-201ENST00000564593 TRAPPC3LQ5T215 181 aa7.36□□□□□ -1.23
LINC00560-201ENST00000564593 TRIM42Q8IWZ5 723 aa7.36□□□□□ -1.23
LINC00560-201ENST00000564593 KLHL23Q8NBE8 558 aa7.36□□□□□ -1.23
LINC00560-201ENST00000564593 JARID2Q92833 1246 aaPredicted RBP7.36□□□□□ -1.23
LINC00560-201ENST00000564593 KLHDC7BQ96G42 594 aa7.36□□□□□ -1.23
LINC00560-201ENST00000564593 KCNQ5Q9NR82 932 aa7.36□□□□□ -1.23
LINC00560-201ENST00000564593 GREM1O60565 184 aa7.35□□□□□ -1.23
LINC00560-201ENST00000564593 GSTP1P09211 210 aaKnown RBP7.35□□□□□ -1.23
LINC00560-201ENST00000564593 GARTP22102 1010 aa7.35□□□□□ -1.23
LINC00560-201ENST00000564593 SETDB1Q15047 1291 aa7.35□□□□□ -1.23
LINC00560-201ENST00000564593 RSPO4Q2I0M5 234 aaPredicted RBP7.35□□□□□ -1.23
LINC00560-201ENST00000564593 FOXD4L6Q3SYB3 417 aaPredicted RBP7.35□□□□□ -1.23
LINC00560-201ENST00000564593 FOXD4L3Q6VB84 417 aaPredicted RBP7.35□□□□□ -1.23
LINC00560-201ENST00000564593 MAP4K3Q8IVH8 894 aa7.35□□□□□ -1.23
LINC00560-201ENST00000564593 EAF1Q96JC9 268 aaPredicted RBP7.35□□□□□ -1.23
LINC00560-201ENST00000564593 CORO1BQ9BR76 489 aa7.35□□□□□ -1.23
LINC00560-201ENST00000564593 NT5C1AQ9BXI3 368 aa7.35□□□□□ -1.23
LINC00560-201ENST00000564593 ZC3H12CQ9C0D7 883 aaKnown RBP7.35□□□□□ -1.23
LINC00560-201ENST00000564593 ZNF252P-AS1Q0IIN9 211 aa7.34□□□□□ -1.23
LINC00560-201ENST00000564593 SEPT6Q14141 434 aa7.34□□□□□ -1.23
LINC00560-201ENST00000564593 POU4F3Q15319 338 aa7.34□□□□□ -1.23
LINC00560-201ENST00000564593 MAP1SQ66K74 1059 aaPredicted RBP7.34□□□□□ -1.23
LINC00560-201ENST00000564593 BNC2Q6ZN30 1099 aaPredicted RBP7.34□□□□□ -1.23
LINC00560-201ENST00000564593 PDZD3Q86UT5 571 aa7.34□□□□□ -1.23
LINC00560-201ENST00000564593 CCDC84Q86UT8 332 aaPredicted RBP7.34□□□□□ -1.23
LINC00560-201ENST00000564593 KCNB2Q92953 911 aa7.34□□□□□ -1.23
LINC00560-201ENST00000564593 GMLQ99445 158 aa7.34□□□□□ -1.23
LINC00560-201ENST00000564593 UBP1Q9NZI7 540 aa7.34□□□□□ -1.23
LINC00560-201ENST00000564593 F13A1P00488 732 aa7.33□□□□□ -1.24
LINC00560-201ENST00000564593 MAOBP27338 520 aa7.33□□□□□ -1.24
LINC00560-201ENST00000564593 DIEXFQ68CQ4 756 aaKnown RBP7.33□□□□□ -1.24
LINC00560-201ENST00000564593 ILDR2Q71H61 639 aa7.33□□□□□ -1.24
LINC00560-201ENST00000564593 GALNT11Q8NCW6 608 aa7.33□□□□□ -1.24
LINC00560-201ENST00000564593 RASGRP4Q8TDF6 673 aa7.33□□□□□ -1.24
LINC00560-201ENST00000564593 SPATA32Q96LK8 384 aa7.33□□□□□ -1.24
LINC00560-201ENST00000564593 ATF4P18848 351 aaPredicted RBP7.33□□□□□ -1.24
LINC00560-201ENST00000564593 ATP2B1P20020 1258 aa7.33□□□□□ -1.24
LINC00560-201ENST00000564593 NLRP12P59046 1061 aa7.33□□□□□ -1.24
LINC00560-201ENST00000564593 APOBRQ0VD83 1088 aa7.33□□□□□ -1.24
LINC00560-201ENST00000564593 ARTNQ5T4W7 220 aa7.33□□□□□ -1.24
LINC00560-201ENST00000564593 SCARA3Q6AZY7 606 aa7.33□□□□□ -1.24
LINC00560-201ENST00000564593 MPRIPQ6WCQ1 1025 aa7.33□□□□□ -1.24
LINC00560-201ENST00000564593 FAM196AQ6ZSG2 479 aa7.33□□□□□ -1.24
LINC00560-201ENST00000564593 GATAD2BQ8WXI9 593 aa7.33□□□□□ -1.24
LINC00560-201ENST00000564593 USP26Q9BXU7 913 aa7.33□□□□□ -1.24
LINC00560-201ENST00000564593 NRSN2Q9GZP1 204 aa7.33□□□□□ -1.24
LINC00560-201ENST00000564593 ROBO2Q9HCK4 1378 aa7.32□□□□□ -1.24
LINC00560-201ENST00000564593 DDX3YO15523 660 aaKnown RBP7.32□□□□□ -1.24
LINC00560-201ENST00000564593 DEAF1O75398 565 aaPredicted RBP7.32□□□□□ -1.24
LINC00560-201ENST00000564593 TRIM37O94972 964 aa7.32□□□□□ -1.24
LINC00560-201ENST00000564593 ECEL1O95672 775 aa7.32□□□□□ -1.24
LINC00560-201ENST00000564593 SPATA31C1P0DKV0 1188 aa7.32□□□□□ -1.24
LINC00560-201ENST00000564593 CD68P34810 354 aaPredicted RBP7.32□□□□□ -1.24
LINC00560-201ENST00000564593 NKAPLQ5M9Q1 402 aa7.32□□□□□ -1.24
LINC00560-201ENST00000564593 DTWD1Q8N5C7 304 aa7.32□□□□□ -1.24
LINC00560-201ENST00000564593 ZFP64Q9NPA5 681 aa7.32□□□□□ -1.24
LINC00560-201ENST00000564593 KRTAP4-8A0A0G2JLE6 195 aa7.31□□□□□ -1.24
LINC00560-201ENST00000564593 TLR3O15455 904 aaKnown RBP7.31□□□□□ -1.24
LINC00560-201ENST00000564593 CRKP46108 304 aa7.31□□□□□ -1.24
LINC00560-201ENST00000564593 PTPN11Q06124 597 aaPredicted RBP7.31□□□□□ -1.24
LINC00560-201ENST00000564593 PDE3AQ14432 1141 aa7.31□□□□□ -1.24
LINC00560-201ENST00000564593 DCAF11Q8TEB1 546 aa7.31□□□□□ -1.24
LINC00560-201ENST00000564593 UBXN4Q92575 508 aa7.31□□□□□ -1.24
LINC00560-201ENST00000564593 NKD1Q969G9 470 aa7.31□□□□□ -1.24
LINC00560-201ENST00000564593 GAL3ST3Q96A11 431 aa7.31□□□□□ -1.24
LINC00560-201ENST00000564593 ACSBG1Q96GR2 724 aa7.31□□□□□ -1.24
LINC00560-201ENST00000564593 SEC16BQ96JE7 1060 aa7.31□□□□□ -1.24
LINC00560-201ENST00000564593 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.31□□□□□ -1.24
LINC00560-201ENST00000564593 EFR3BQ9Y2G0 817 aa7.31□□□□□ -1.24
LINC00560-201ENST00000564593 A0A0A0MRY4 1105 aa7.3□□□□□ -1.24
LINC00560-201ENST00000564593 FAM221AA4D161 298 aa7.3□□□□□ -1.24
LINC00560-201ENST00000564593 BTBD11A6QL63 1104 aa7.3□□□□□ -1.24
LINC00560-201ENST00000564593 TM4SF5O14894 197 aa7.3□□□□□ -1.24
LINC00560-201ENST00000564593 BPNT1O95861 308 aa7.3□□□□□ -1.24
LINC00560-201ENST00000564593 RAC1P63000 192 aa7.3□□□□□ -1.24
LINC00560-201ENST00000564593 SEZ6Q53EL9 994 aa7.3□□□□□ -1.24
LINC00560-201ENST00000564593 FBXO27Q8NI29 283 aa7.3□□□□□ -1.24
LINC00560-201ENST00000564593 GPBAR1Q8TDU6 330 aa7.3□□□□□ -1.24
LINC00560-201ENST00000564593 TRIM11Q96F44 468 aa7.3□□□□□ -1.24
LINC00560-201ENST00000564593 PLVAPQ9BX97 442 aa7.3□□□□□ -1.24
LINC00560-201ENST00000564593 CCDC86Q9H6F5 360 aaKnown RBP7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms