RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 SYCP1Q15431 976 aa13.07□□□□□ -0.32
CUX1-218ENST00000560541 HSP90AA4PQ58FG1 418 aa13.07□□□□□ -0.32
CUX1-218ENST00000560541 ICE2Q659A1 982 aa13.07□□□□□ -0.32
CUX1-218ENST00000560541 SYT10Q6XYQ8 523 aa13.07□□□□□ -0.32
CUX1-218ENST00000560541 LRRN4CLQ8ND94 238 aa13.07□□□□□ -0.32
CUX1-218ENST00000560541 NEK11Q8NG66 645 aa13.07□□□□□ -0.32
CUX1-218ENST00000560541 MORC2Q9Y6X9 1032 aaPredicted RBP13.07□□□□□ -0.32
CUX1-218ENST00000560541 YEATS4O95619 227 aa13.06□□□□□ -0.32
CUX1-218ENST00000560541 EVCP57679 992 aa13.06□□□□□ -0.32
CUX1-218ENST00000560541 TOM1L2Q6ZVM7 507 aa13.06□□□□□ -0.32
CUX1-218ENST00000560541 MICU3Q86XE3 530 aa13.06□□□□□ -0.32
CUX1-218ENST00000560541 MYL10Q9BUA6 226 aa13.06□□□□□ -0.32
CUX1-218ENST00000560541 CIAO1O76071 339 aa13.06□□□□□ -0.32
CUX1-218ENST00000560541 GNL2Q13823 731 aaKnown RBP13.06□□□□□ -0.32
CUX1-218ENST00000560541 FBXO38Q6PIJ6 1188 aa13.06□□□□□ -0.32
CUX1-218ENST00000560541 APPBP2Q92624 585 aa13.06□□□□□ -0.32
CUX1-218ENST00000560541 PPP1R13BQ96KQ4 1090 aa13.06□□□□□ -0.32
CUX1-218ENST00000560541 CLIC6Q96NY7 704 aa13.06□□□□□ -0.32
CUX1-218ENST00000560541 OSBPL5Q9H0X9 879 aaPredicted RBP13.06□□□□□ -0.32
CUX1-218ENST00000560541 INCENPQ9NQS7 918 aa13.06□□□□□ -0.32
CUX1-218ENST00000560541 CEP83Q9Y592 693 aa13.06□□□□□ -0.32
CUX1-218ENST00000560541 ABCC6O95255 1503 aa13.06□□□□□ -0.32
CUX1-218ENST00000560541 GPTP24298 496 aa13.06□□□□□ -0.32
CUX1-218ENST00000560541 NCAPHQ15003 741 aa13.06□□□□□ -0.32
CUX1-218ENST00000560541 EGFL6Q8IUX8 553 aa13.06□□□□□ -0.32
CUX1-218ENST00000560541 NLRP12P59046 1061 aa13.05□□□□□ -0.32
CUX1-218ENST00000560541 PNOCQ13519 176 aa13.05□□□□□ -0.32
CUX1-218ENST00000560541 BRAPQ7Z569 592 aa13.05□□□□□ -0.32
CUX1-218ENST00000560541 TBC1D10CQ8IV04 446 aa13.05□□□□□ -0.32
CUX1-218ENST00000560541 STK11IPQ8N1F8 1099 aa13.05□□□□□ -0.32
CUX1-218ENST00000560541 ALG1Q9BT22 464 aa13.05□□□□□ -0.32
CUX1-218ENST00000560541 KIF1AQ12756 1690 aa13.05□□□□□ -0.32
CUX1-218ENST00000560541 NWD2Q9ULI1 1742 aa13.05□□□□□ -0.32
CUX1-218ENST00000560541 IDH1O75874 414 aaKnown RBP13.05□□□□□ -0.32
CUX1-218ENST00000560541 SYKP43405 635 aa13.05□□□□□ -0.32
CUX1-218ENST00000560541 E2F4Q16254 413 aa13.05□□□□□ -0.32
CUX1-218ENST00000560541 CYB5R4Q7L1T6 521 aa13.05□□□□□ -0.32
CUX1-218ENST00000560541 VPS37DQ86XT2 251 aa13.05□□□□□ -0.32
CUX1-218ENST00000560541 ZCRB1Q8TBF4 217 aaKnown RBP13.05□□□□□ -0.32
CUX1-218ENST00000560541 DPF2Q92785 391 aa13.05□□□□□ -0.32
CUX1-218ENST00000560541 NBPF3Q9H094 633 aa13.05□□□□□ -0.32
CUX1-218ENST00000560541 LCMT1Q9UIC8 334 aa13.05□□□□□ -0.32
CUX1-218ENST00000560541 GLI3P10071 1580 aa13.05□□□□□ -0.32
CUX1-218ENST00000560541 SLU7O95391 586 aaKnown RBP13.04□□□□□ -0.32
CUX1-218ENST00000560541 MCAMP43121 646 aa13.04□□□□□ -0.32
CUX1-218ENST00000560541 METAP2P50579 478 aaKnown RBP eCLIP13.04□□□□□ -0.32
CUX1-218ENST00000560541 FANCCQ00597 558 aa13.04□□□□□ -0.32
CUX1-218ENST00000560541 TRDNQ13061 729 aa13.04□□□□□ -0.32
CUX1-218ENST00000560541 LRRFIP1Q32MZ4 808 aaKnown RBP13.04□□□□□ -0.32
CUX1-218ENST00000560541 METTL24Q5JXM2 366 aa13.04□□□□□ -0.32
CUX1-218ENST00000560541 SPECC1Q5M775 1068 aa13.04□□□□□ -0.32
CUX1-218ENST00000560541 SLC9C2Q5TAH2 1124 aa13.04□□□□□ -0.32
CUX1-218ENST00000560541 B4E1Z4 1266 aa13.04□□□□□ -0.32
CUX1-218ENST00000560541 ZFYP08048 801 aaPredicted RBP13.04□□□□□ -0.32
CUX1-218ENST00000560541 CDC27P30260 824 aa13.04□□□□□ -0.32
CUX1-218ENST00000560541 IFIT5Q13325 482 aaKnown RBP13.04□□□□□ -0.32
CUX1-218ENST00000560541 ERCC6LQ2NKX8 1250 aa13.04□□□□□ -0.32
CUX1-218ENST00000560541 HOMER1Q86YM7 354 aa13.04□□□□□ -0.32
CUX1-218ENST00000560541 AKAP2Q9Y2D5 859 aa13.04□□□□□ -0.32
CUX1-218ENST00000560541 IRF6O14896 467 aa13.04□□□□□ -0.32
CUX1-218ENST00000560541 CMA1P23946 247 aa13.04□□□□□ -0.32
CUX1-218ENST00000560541 TPM4P67936 248 aa13.04□□□□□ -0.32
CUX1-218ENST00000560541 ZNF397Q8NF99 534 aaPredicted RBP13.04□□□□□ -0.32
CUX1-218ENST00000560541 ERO1AQ96HE7 468 aa13.04□□□□□ -0.32
CUX1-218ENST00000560541 NOL10Q9BSC4 688 aaKnown RBP13.04□□□□□ -0.32
CUX1-218ENST00000560541 IMPACTQ9P2X3 320 aa13.04□□□□□ -0.32
CUX1-218ENST00000560541 ALS2Q96Q42 1657 aa13.03□□□□□ -0.32
CUX1-218ENST00000560541 TJP1Q07157 1748 aa13.03□□□□□ -0.32
CUX1-218ENST00000560541 KRT40Q6A162 431 aa13.03□□□□□ -0.32
CUX1-218ENST00000560541 SHC4Q6S5L8 630 aa13.03□□□□□ -0.32
CUX1-218ENST00000560541 FBXL16Q8N461 479 aa13.03□□□□□ -0.32
CUX1-218ENST00000560541 CCDC150Q8NCX0 1101 aa13.03□□□□□ -0.32
CUX1-218ENST00000560541 SERPINC1P01008 464 aa13.03□□□□□ -0.32
CUX1-218ENST00000560541 CCDC172P0C7W6 258 aa13.03□□□□□ -0.32
CUX1-218ENST00000560541 SLC39A14Q15043 492 aa13.03□□□□□ -0.32
CUX1-218ENST00000560541 CFAP100Q494V2 611 aa13.03□□□□□ -0.32
CUX1-218ENST00000560541 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.03□□□□□ -0.32
CUX1-218ENST00000560541 HSD3B7Q9H2F3 369 aa13.03□□□□□ -0.32
CUX1-218ENST00000560541 ANGEL1Q9UNK9 670 aaKnown RBP13.03□□□□□ -0.32
CUX1-218ENST00000560541 TCIRG1Q13488 830 aa13.02□□□□□ -0.32
CUX1-218ENST00000560541 LDHAL6AQ6ZMR3 332 aa13.02□□□□□ -0.32
CUX1-218ENST00000560541 NFXL1Q6ZNB6 911 aa13.02□□□□□ -0.32
CUX1-218ENST00000560541 BPIFA3Q9BQP9 254 aa13.02□□□□□ -0.32
CUX1-218ENST00000560541 PRDM11Q9NQV5 511 aa13.02□□□□□ -0.32
CUX1-218ENST00000560541 ATG3Q9NT62 314 aa13.02□□□□□ -0.32
CUX1-218ENST00000560541 PCDH11XQ9BZA7 1347 aa13.02□□□□□ -0.32
CUX1-218ENST00000560541 PCDH11YQ9BZA8 1340 aa13.02□□□□□ -0.32
CUX1-218ENST00000560541 TMEM232C9JQI7 657 aa13.02□□□□□ -0.33
CUX1-218ENST00000560541 UBASH3AP57075 661 aa13.02□□□□□ -0.33
CUX1-218ENST00000560541 FAM177A1Q8N128 213 aaPredicted RBP13.02□□□□□ -0.33
CUX1-218ENST00000560541 ISCA1Q9BUE6 129 aa13.02□□□□□ -0.33
CUX1-218ENST00000560541 GREM2Q9H772 168 aa13.02□□□□□ -0.33
CUX1-218ENST00000560541 TMEM94Q12767 1356 aa13.02□□□□□ -0.33
CUX1-218ENST00000560541 FOXN1O15353 648 aa13.02□□□□□ -0.33
CUX1-218ENST00000560541 CCDC82Q8N4S0 544 aa13.02□□□□□ -0.33
CUX1-218ENST00000560541 PIH1D3Q9NQM4 214 aaKnown RBP13.02□□□□□ -0.33
CUX1-218ENST00000560541 STRN4Q9NRL3 753 aa13.02□□□□□ -0.33
CUX1-218ENST00000560541 CNNM1Q9NRU3 951 aa13.02□□□□□ -0.33
CUX1-218ENST00000560541 DNAI1Q9UI46 699 aa13.02□□□□□ -0.33
CUX1-218ENST00000560541 COL18A1P39060 1754 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms