RNA–Protein interactions for RNA: ENST00000557703.5

SHMT2-234, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-234ENST00000557703 IDI2Q9BXS1 227 aa16.59■□□□□ 0.25
SHMT2-234ENST00000557703 LNPKQ9C0E8 428 aa16.59■□□□□ 0.25
SHMT2-234ENST00000557703 UNCXA6NJT0 531 aa16.58■□□□□ 0.24
SHMT2-234ENST00000557703 GOLIM4O00461 696 aa16.58■□□□□ 0.24
SHMT2-234ENST00000557703 HSPA6P17066 643 aa16.58■□□□□ 0.24
SHMT2-234ENST00000557703 UBE3CQ15386 1083 aa16.58■□□□□ 0.24
SHMT2-234ENST00000557703 B4GALNT3Q6L9W6 998 aa16.58■□□□□ 0.24
SHMT2-234ENST00000557703 USP48Q86UV5 1035 aa16.58■□□□□ 0.24
SHMT2-234ENST00000557703 KBTBD3Q8NAB2 608 aa16.58■□□□□ 0.24
SHMT2-234ENST00000557703 CCDC136Q96JN2 1154 aa16.58■□□□□ 0.24
SHMT2-234ENST00000557703 DEFB129Q9H1M3 183 aa16.58■□□□□ 0.24
SHMT2-234ENST00000557703 TDRD3Q9H7E2 651 aaKnown RBP16.58■□□□□ 0.24
SHMT2-234ENST00000557703 PIH1D3Q9NQM4 214 aaKnown RBP16.58■□□□□ 0.24
SHMT2-234ENST00000557703 TMEM88BA6NKF7 163 aa16.57■□□□□ 0.24
SHMT2-234ENST00000557703 SLC9C2Q5TAH2 1124 aa16.57■□□□□ 0.24
SHMT2-234ENST00000557703 GLIS2Q9BZE0 524 aaPredicted RBP16.57■□□□□ 0.24
SHMT2-234ENST00000557703 BCL11AQ9H165 835 aa16.57■□□□□ 0.24
SHMT2-234ENST00000557703 CREBZFQ9NS37 354 aa16.57■□□□□ 0.24
SHMT2-234ENST00000557703 RPAP1Q9BWH6 1393 aaPredicted RBP16.56■□□□□ 0.24
SHMT2-234ENST00000557703 ENTPD3O75355 529 aa16.56■□□□□ 0.24
SHMT2-234ENST00000557703 BTDP43251 543 aa16.56■□□□□ 0.24
SHMT2-234ENST00000557703 CDC42EP5Q6NZY7 148 aa16.56■□□□□ 0.24
SHMT2-234ENST00000557703 PLEKHM2Q8IWE5 1019 aa16.56■□□□□ 0.24
SHMT2-234ENST00000557703 ZNF384Q8TF68 577 aa16.56■□□□□ 0.24
SHMT2-234ENST00000557703 EVI5LQ96CN4 794 aa16.56■□□□□ 0.24
SHMT2-234ENST00000557703 HHIPL1Q96JK4 782 aa16.56■□□□□ 0.24
SHMT2-234ENST00000557703 ANTXR1Q9H6X2 564 aa16.56■□□□□ 0.24
SHMT2-234ENST00000557703 VEZTQ9HBM0 779 aa16.56■□□□□ 0.24
SHMT2-234ENST00000557703 USP40Q9NVE5 1235 aa16.56■□□□□ 0.24
SHMT2-234ENST00000557703 PPP4R2Q9NY27 417 aa16.56■□□□□ 0.24
SHMT2-234ENST00000557703 DOCK2Q92608 1830 aa16.56■□□□□ 0.24
SHMT2-234ENST00000557703 CYP7A1P22680 504 aa16.55■□□□□ 0.24
SHMT2-234ENST00000557703 RASA3Q14644 834 aa16.55■□□□□ 0.24
SHMT2-234ENST00000557703 MAGEB6Q8N7X4 407 aa16.55■□□□□ 0.24
SHMT2-234ENST00000557703 FAM151AQ8WW52 585 aa16.55■□□□□ 0.24
SHMT2-234ENST00000557703 TAOK2Q9UL54 1235 aa16.55■□□□□ 0.24
SHMT2-234ENST00000557703 MAST2Q6P0Q8 1798 aa16.54■□□□□ 0.24
SHMT2-234ENST00000557703 ASTN2O75129 1339 aaPredicted RBP16.54■□□□□ 0.24
SHMT2-234ENST00000557703 CLRN2A0PK11 232 aa16.54■□□□□ 0.24
SHMT2-234ENST00000557703 PDE6AP16499 860 aa16.54■□□□□ 0.24
SHMT2-234ENST00000557703 ADD2P35612 726 aa16.54■□□□□ 0.24
SHMT2-234ENST00000557703 C2orf69Q8N8R5 385 aa16.54■□□□□ 0.24
SHMT2-234ENST00000557703 CDCA5Q96FF9 252 aa16.54■□□□□ 0.24
SHMT2-234ENST00000557703 TRPM7Q96QT4 1865 aa16.54■□□□□ 0.24
SHMT2-234ENST00000557703 RFX7Q2KHR2 1363 aa16.53■□□□□ 0.24
SHMT2-234ENST00000557703 PPP1R12BO60237 982 aaPredicted RBP16.53■□□□□ 0.24
SHMT2-234ENST00000557703 CELF2O95319 508 aaKnown RBP16.53■□□□□ 0.24
SHMT2-234ENST00000557703 RHBDL3P58872 404 aa16.53■□□□□ 0.24
SHMT2-234ENST00000557703 OTUD7AQ8TE49 926 aaPredicted RBP16.53■□□□□ 0.24
SHMT2-234ENST00000557703 DHX36Q9H2U1 1008 aaKnown RBP16.53■□□□□ 0.24
SHMT2-234ENST00000557703 PCDHAC2Q9Y5I4 1007 aa16.53■□□□□ 0.24
SHMT2-234ENST00000557703 TCRBV5S4A2TA0A5A2 114 aa16.52■□□□□ 0.24
SHMT2-234ENST00000557703 NDUFB9Q9Y6M9 179 aa16.52■□□□□ 0.24
SHMT2-234ENST00000557703 COL2A1P02458 1487 aaPredicted RBP16.52■□□□□ 0.23
SHMT2-234ENST00000557703 ZNF532Q9HCE3 1301 aa16.51■□□□□ 0.23
SHMT2-234ENST00000557703 MAGEB6P1A0A0J9YX57 407 aa16.51■□□□□ 0.23
SHMT2-234ENST00000557703 TCP10L2B9ZVM9 353 aa16.51■□□□□ 0.23
SHMT2-234ENST00000557703 ADM5C9JUS6 153 aa16.51■□□□□ 0.23
SHMT2-234ENST00000557703 HIP1O00291 1037 aa16.51■□□□□ 0.23
SHMT2-234ENST00000557703 TRAF5O00463 557 aa16.51■□□□□ 0.23
SHMT2-234ENST00000557703 RNF113AO15541 343 aaKnown RBP16.51■□□□□ 0.23
SHMT2-234ENST00000557703 WDHD1O75717 1129 aaPredicted RBP16.51■□□□□ 0.23
SHMT2-234ENST00000557703 MAP3K11Q16584 847 aa16.51■□□□□ 0.23
SHMT2-234ENST00000557703 CST9Q5W186 159 aa16.51■□□□□ 0.23
SHMT2-234ENST00000557703 DCAF15Q66K64 600 aa16.51■□□□□ 0.23
SHMT2-234ENST00000557703 ARMC9Q7Z3E5 817 aa16.51■□□□□ 0.23
SHMT2-234ENST00000557703 TEX11Q8IYF3 940 aa16.51■□□□□ 0.23
SHMT2-234ENST00000557703 GBA2Q9HCG7 927 aaPredicted RBP16.51■□□□□ 0.23
SHMT2-234ENST00000557703 AATFQ9NY61 560 aaKnown RBP eCLIP16.51■□□□□ 0.23
SHMT2-234ENST00000557703 GNAT2P19087 354 aa16.5■□□□□ 0.23
SHMT2-234ENST00000557703 TSHZ3Q63HK5 1081 aa16.5■□□□□ 0.23
SHMT2-234ENST00000557703 APPBP2Q92624 585 aa16.5■□□□□ 0.23
SHMT2-234ENST00000557703 EDC3Q96F86 508 aaKnown RBP16.5■□□□□ 0.23
SHMT2-234ENST00000557703 TEPSINQ96N21 525 aa16.5■□□□□ 0.23
SHMT2-234ENST00000557703 RIOK1Q9BRS2 568 aaKnown RBP16.5■□□□□ 0.23
SHMT2-234ENST00000557703 FSD1Q9BTV5 496 aa16.5■□□□□ 0.23
SHMT2-234ENST00000557703 CRNKL1Q9BZJ0 848 aaKnown RBP16.5■□□□□ 0.23
SHMT2-234ENST00000557703 FAM198AQ9UFP1 575 aa16.5■□□□□ 0.23
SHMT2-234ENST00000557703 TLL2Q9Y6L7 1015 aa16.5■□□□□ 0.23
SHMT2-234ENST00000557703 MYO5AQ9Y4I1 1855 aaKnown RBP16.5■□□□□ 0.23
SHMT2-234ENST00000557703 ATRNL1Q5VV63 1379 aa16.5■□□□□ 0.23
SHMT2-234ENST00000557703 RGS3P49796 1198 aa16.49■□□□□ 0.23
SHMT2-234ENST00000557703 ADGRA1Q86SQ6 560 aa16.49■□□□□ 0.23
SHMT2-234ENST00000557703 SAPCD2Q86UD0 394 aa16.49■□□□□ 0.23
SHMT2-234ENST00000557703 AIDAQ96BJ3 306 aa16.49■□□□□ 0.23
SHMT2-234ENST00000557703 ATP8A2Q9NTI2 1148 aa16.49■□□□□ 0.23
SHMT2-234ENST00000557703 CNTNAP1P78357 1384 aa16.49■□□□□ 0.23
SHMT2-234ENST00000557703 MYH7P12883 1935 aa16.49■□□□□ 0.23
SHMT2-234ENST00000557703 RASSF10A6NK89 507 aa16.48■□□□□ 0.23
SHMT2-234ENST00000557703 TBC1D12O60347 775 aa16.48■□□□□ 0.23
SHMT2-234ENST00000557703 IREB2P48200 963 aaKnown RBP16.48■□□□□ 0.23
SHMT2-234ENST00000557703 MAP3K10Q02779 954 aa16.48■□□□□ 0.23
SHMT2-234ENST00000557703 NFIAQ12857 509 aa16.48■□□□□ 0.23
SHMT2-234ENST00000557703 GIMAP6Q6P9H5 292 aa16.48■□□□□ 0.23
SHMT2-234ENST00000557703 SH3RF3Q8TEJ3 882 aaPredicted RBP16.48■□□□□ 0.23
SHMT2-234ENST00000557703 DDRGK1Q96HY6 314 aa16.48■□□□□ 0.23
SHMT2-234ENST00000557703 TMEM39BQ9GZU3 492 aa16.48■□□□□ 0.23
SHMT2-234ENST00000557703 PAPPA2Q9BXP8 1791 aa16.47■□□□□ 0.23
SHMT2-234ENST00000557703 TRIM6-TRIM34B2RNG4 842 aa16.47■□□□□ 0.23
SHMT2-234ENST00000557703 ECE1P42892 770 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms