RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 OSBP2Q969R2 916 aa15.5■□□□□ 0.07
SHMT2-227ENST00000557269 SEC62Q99442 399 aaKnown RBP15.5■□□□□ 0.07
SHMT2-227ENST00000557269 PUS7LQ9H0K6 701 aaKnown RBP15.5■□□□□ 0.07
SHMT2-227ENST00000557269 AATFQ9NY61 560 aaKnown RBP eCLIP15.5■□□□□ 0.07
SHMT2-227ENST00000557269 IGSF3O75054 1194 aa15.49■□□□□ 0.07
SHMT2-227ENST00000557269 CACNB3P54284 484 aa15.49■□□□□ 0.07
SHMT2-227ENST00000557269 RHBDL3P58872 404 aa15.49■□□□□ 0.07
SHMT2-227ENST00000557269 ZSCAN25Q6NSZ9 544 aa15.49■□□□□ 0.07
SHMT2-227ENST00000557269 SLF2Q8IX21 1173 aa15.49■□□□□ 0.07
SHMT2-227ENST00000557269 SH3RF3Q8TEJ3 882 aaPredicted RBP15.49■□□□□ 0.07
SHMT2-227ENST00000557269 FAM227BQ96M60 508 aa15.49■□□□□ 0.07
SHMT2-227ENST00000557269 ZNF70Q9UC06 446 aaPredicted RBP15.49■□□□□ 0.07
SHMT2-227ENST00000557269 MYH7P12883 1935 aa15.49■□□□□ 0.07
SHMT2-227ENST00000557269 M0R2C6 588 aa15.48■□□□□ 0.07
SHMT2-227ENST00000557269 ZFYP08048 801 aaPredicted RBP15.48■□□□□ 0.07
SHMT2-227ENST00000557269 PPP4CP60510 307 aa15.48■□□□□ 0.07
SHMT2-227ENST00000557269 NMIQ13287 307 aaPredicted RBP15.48■□□□□ 0.07
SHMT2-227ENST00000557269 SPDYE2Q495Y8 402 aa15.48■□□□□ 0.07
SHMT2-227ENST00000557269 ZMYM1Q5SVZ6 1142 aa15.48■□□□□ 0.07
SHMT2-227ENST00000557269 ANGEL2Q5VTE6 544 aaKnown RBP15.48■□□□□ 0.07
SHMT2-227ENST00000557269 PNMA8AQ86V59 439 aaPredicted RBP15.48■□□□□ 0.07
SHMT2-227ENST00000557269 RIOK1Q9BRS2 568 aaKnown RBP15.48■□□□□ 0.07
SHMT2-227ENST00000557269 USP40Q9NVE5 1235 aa15.48■□□□□ 0.07
SHMT2-227ENST00000557269 PGAP2Q9UHJ9 254 aa15.48■□□□□ 0.07
SHMT2-227ENST00000557269 A0A0D9SFI3 127 aa15.47■□□□□ 0.07
SHMT2-227ENST00000557269 MAGEB6P1A0A0J9YX57 407 aa15.47■□□□□ 0.07
SHMT2-227ENST00000557269 DLK2Q6UY11 383 aa15.47■□□□□ 0.07
SHMT2-227ENST00000557269 LCORLQ8N3X6 602 aa15.47■□□□□ 0.07
SHMT2-227ENST00000557269 APPBP2Q92624 585 aa15.47■□□□□ 0.07
SHMT2-227ENST00000557269 ARMT1Q9H993 441 aa15.47■□□□□ 0.07
SHMT2-227ENST00000557269 GGA3Q9NZ52 723 aa15.47■□□□□ 0.07
SHMT2-227ENST00000557269 RFX7Q2KHR2 1363 aa15.47■□□□□ 0.07
SHMT2-227ENST00000557269 WDHD1O75717 1129 aaPredicted RBP15.46■□□□□ 0.07
SHMT2-227ENST00000557269 MBD4O95243 580 aa15.46■□□□□ 0.07
SHMT2-227ENST00000557269 CHMLP26374 656 aa15.46■□□□□ 0.07
SHMT2-227ENST00000557269 NFIAQ12857 509 aa15.46■□□□□ 0.07
SHMT2-227ENST00000557269 TMED8Q6PL24 325 aaPredicted RBP15.46■□□□□ 0.07
SHMT2-227ENST00000557269 CCDC129Q6ZRS4 1044 aa15.46■□□□□ 0.07
SHMT2-227ENST00000557269 IL25Q9H293 177 aa15.46■□□□□ 0.07
SHMT2-227ENST00000557269 CLEC11AQ9Y240 323 aa15.46■□□□□ 0.07
SHMT2-227ENST00000557269 AK9Q5TCS8 1911 aa15.46■□□□□ 0.07
SHMT2-227ENST00000557269 TCP10L2B9ZVM9 353 aa15.45■□□□□ 0.06
SHMT2-227ENST00000557269 PRKAB2O43741 272 aa15.45■□□□□ 0.06
SHMT2-227ENST00000557269 MYO1BO43795 1136 aa15.45■□□□□ 0.06
SHMT2-227ENST00000557269 BAG3O95817 575 aa15.45■□□□□ 0.06
SHMT2-227ENST00000557269 MAP1SQ66K74 1059 aaPredicted RBP15.45■□□□□ 0.06
SHMT2-227ENST00000557269 CWC27Q6UX04 472 aaKnown RBP15.45■□□□□ 0.06
SHMT2-227ENST00000557269 LDHDQ86WU2 507 aa15.45■□□□□ 0.06
SHMT2-227ENST00000557269 ZFPM1Q8IX07 1006 aa15.45■□□□□ 0.06
SHMT2-227ENST00000557269 ZC3H15Q8WU90 426 aaKnown RBP15.45■□□□□ 0.06
SHMT2-227ENST00000557269 STRBPQ96SI9 672 aaKnown RBP15.45■□□□□ 0.06
SHMT2-227ENST00000557269 VEZTQ9HBM0 779 aa15.45■□□□□ 0.06
SHMT2-227ENST00000557269 DDX4Q9NQI0 724 aaKnown RBP15.45■□□□□ 0.06
SHMT2-227ENST00000557269 FAM198AQ9UFP1 575 aa15.45■□□□□ 0.06
SHMT2-227ENST00000557269 CNTNAP1P78357 1384 aa15.45■□□□□ 0.06
SHMT2-227ENST00000557269 LRRFIP1Q32MZ4 808 aaKnown RBP15.44■□□□□ 0.06
SHMT2-227ENST00000557269 ZNF589Q86UQ0 364 aaPredicted RBP15.44■□□□□ 0.06
SHMT2-227ENST00000557269 TICAM2Q86XR7 235 aa15.44■□□□□ 0.06
SHMT2-227ENST00000557269 NOL10Q9BSC4 688 aaKnown RBP15.44■□□□□ 0.06
SHMT2-227ENST00000557269 HELLSQ9NRZ9 838 aa15.44■□□□□ 0.06
SHMT2-227ENST00000557269 DIAPH3Q9NSV4 1193 aa15.44■□□□□ 0.06
SHMT2-227ENST00000557269 ECM29Q5VYK3 1845 aa15.43■□□□□ 0.06
SHMT2-227ENST00000557269 ADM5C9JUS6 153 aa15.43■□□□□ 0.06
SHMT2-227ENST00000557269 GPAA1O43292 621 aa15.43■□□□□ 0.06
SHMT2-227ENST00000557269 FMR1Q06787 632 aaKnown RBP eCLIP15.43■□□□□ 0.06
SHMT2-227ENST00000557269 TCP10Q12799 353 aa15.43■□□□□ 0.06
SHMT2-227ENST00000557269 PICALMQ13492 652 aa15.43■□□□□ 0.06
SHMT2-227ENST00000557269 MCMDC2Q4G0Z9 681 aa15.43■□□□□ 0.06
SHMT2-227ENST00000557269 PRAMEF18Q5VWM3 479 aa15.43■□□□□ 0.06
SHMT2-227ENST00000557269 USP48Q86UV5 1035 aa15.43■□□□□ 0.06
SHMT2-227ENST00000557269 CDAN1Q8IWY9 1227 aa15.43■□□□□ 0.06
SHMT2-227ENST00000557269 TEX11Q8IYF3 940 aa15.43■□□□□ 0.06
SHMT2-227ENST00000557269 TGFBRAP1Q8WUH2 860 aa15.43■□□□□ 0.06
SHMT2-227ENST00000557269 AIDAQ96BJ3 306 aa15.43■□□□□ 0.06
SHMT2-227ENST00000557269 DCPSQ96C86 337 aaKnown RBP15.43■□□□□ 0.06
SHMT2-227ENST00000557269 IDI2Q9BXS1 227 aa15.43■□□□□ 0.06
SHMT2-227ENST00000557269 GLIS2Q9BZE0 524 aaPredicted RBP15.43■□□□□ 0.06
SHMT2-227ENST00000557269 PITPNM2Q9BZ72 1349 aa15.43■□□□□ 0.06
SHMT2-227ENST00000557269 HIP1O00291 1037 aa15.42■□□□□ 0.06
SHMT2-227ENST00000557269 FOXP2O15409 715 aa15.42■□□□□ 0.06
SHMT2-227ENST00000557269 RASA3Q14644 834 aa15.42■□□□□ 0.06
SHMT2-227ENST00000557269 CHADLQ6NUI6 762 aa15.42■□□□□ 0.06
SHMT2-227ENST00000557269 MAPKAPK5Q8IW41 473 aa15.42■□□□□ 0.06
SHMT2-227ENST00000557269 SDR42E1Q8WUS8 393 aa15.42■□□□□ 0.06
SHMT2-227ENST00000557269 POLR2AP24928 1970 aaKnown RBP15.42■□□□□ 0.06
SHMT2-227ENST00000557269 TRAF5O00463 557 aa15.41■□□□□ 0.06
SHMT2-227ENST00000557269 PLCG2P16885 1265 aa15.41■□□□□ 0.06
SHMT2-227ENST00000557269 VPS53Q5VIR6 699 aa15.41■□□□□ 0.06
SHMT2-227ENST00000557269 FKBP1CQ5VVH2 108 aa15.41■□□□□ 0.06
SHMT2-227ENST00000557269 SH3BP5LQ7L8J4 393 aa15.41■□□□□ 0.06
SHMT2-227ENST00000557269 KRT26Q7Z3Y9 468 aa15.41■□□□□ 0.06
SHMT2-227ENST00000557269 APOBEC3FQ8IUX4 373 aaKnown RBP15.41■□□□□ 0.06
SHMT2-227ENST00000557269 TMEM39BQ9GZU3 492 aa15.41■□□□□ 0.06
SHMT2-227ENST00000557269 DEFB129Q9H1M3 183 aa15.41■□□□□ 0.06
SHMT2-227ENST00000557269 TMOD2Q9NZR1 351 aa15.41■□□□□ 0.06
SHMT2-227ENST00000557269 MKRN1Q9UHC7 482 aaKnown RBP15.41■□□□□ 0.06
SHMT2-227ENST00000557269 SLC4A4Q9Y6R1 1079 aa15.41■□□□□ 0.06
SHMT2-227ENST00000557269 CDK5RAP2Q96SN8 1893 aa15.41■□□□□ 0.06
SHMT2-227ENST00000557269 GSG1L2A8MUP6 293 aa15.4■□□□□ 0.06
SHMT2-227ENST00000557269 CDC45O75419 566 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms