RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 TCRBV5S4A2TA0A5A2 114 aa16.93■□□□□ 0.3
VIPAS39-208ENST00000556412 CACNB3P54284 484 aa16.93■□□□□ 0.3
VIPAS39-208ENST00000556412 DYNLL1P63167 89 aaKnown RBP16.93■□□□□ 0.3
VIPAS39-208ENST00000556412 ANGEL2Q5VTE6 544 aaKnown RBP16.93■□□□□ 0.3
VIPAS39-208ENST00000556412 SCAF8Q9UPN6 1271 aaKnown RBP16.93■□□□□ 0.3
VIPAS39-208ENST00000556412 PSME4Q14997 1843 aa16.93■□□□□ 0.3
VIPAS39-208ENST00000556412 MYH13Q9UKX3 1938 aa16.93■□□□□ 0.3
VIPAS39-208ENST00000556412 GPR75-ASB3A0A0A6YYF3 556 aa16.93■□□□□ 0.3
VIPAS39-208ENST00000556412 MAGEB6P1A0A0J9YX57 407 aa16.93■□□□□ 0.3
VIPAS39-208ENST00000556412 CDC42EP5Q6NZY7 148 aa16.93■□□□□ 0.3
VIPAS39-208ENST00000556412 APPBP2Q92624 585 aa16.93■□□□□ 0.3
VIPAS39-208ENST00000556412 ZBED3Q96IU2 234 aaPredicted RBP16.93■□□□□ 0.3
VIPAS39-208ENST00000556412 TMOD2Q9NZR1 351 aa16.93■□□□□ 0.3
VIPAS39-208ENST00000556412 MBD4O95243 580 aa16.92■□□□□ 0.3
VIPAS39-208ENST00000556412 TMED8Q6PL24 325 aaPredicted RBP16.92■□□□□ 0.3
VIPAS39-208ENST00000556412 SH3RF3Q8TEJ3 882 aaPredicted RBP16.92■□□□□ 0.3
VIPAS39-208ENST00000556412 AIDAQ96BJ3 306 aa16.92■□□□□ 0.3
VIPAS39-208ENST00000556412 PUS7LQ9H0K6 701 aaKnown RBP16.92■□□□□ 0.3
VIPAS39-208ENST00000556412 ZNF70Q9UC06 446 aaPredicted RBP16.92■□□□□ 0.3
VIPAS39-208ENST00000556412 NMIQ13287 307 aaPredicted RBP16.91■□□□□ 0.3
VIPAS39-208ENST00000556412 OSBP2Q969R2 916 aa16.91■□□□□ 0.3
VIPAS39-208ENST00000556412 DCPSQ96C86 337 aaKnown RBP16.91■□□□□ 0.3
VIPAS39-208ENST00000556412 FAM227BQ96M60 508 aa16.91■□□□□ 0.3
VIPAS39-208ENST00000556412 SEC62Q99442 399 aaKnown RBP16.91■□□□□ 0.3
VIPAS39-208ENST00000556412 ARMT1Q9H993 441 aa16.91■□□□□ 0.3
VIPAS39-208ENST00000556412 TCP10L2B9ZVM9 353 aa16.91■□□□□ 0.3
VIPAS39-208ENST00000556412 KIF3CO14782 793 aa16.91■□□□□ 0.3
VIPAS39-208ENST00000556412 SPDYE2Q495Y8 402 aa16.91■□□□□ 0.3
VIPAS39-208ENST00000556412 CWC27Q6UX04 472 aaKnown RBP16.91■□□□□ 0.3
VIPAS39-208ENST00000556412 TEX11Q8IYF3 940 aa16.91■□□□□ 0.3
VIPAS39-208ENST00000556412 LCORLQ8N3X6 602 aa16.91■□□□□ 0.3
VIPAS39-208ENST00000556412 RFX7Q2KHR2 1363 aa16.9■□□□□ 0.3
VIPAS39-208ENST00000556412 A0A0D9SFI3 127 aa16.9■□□□□ 0.3
VIPAS39-208ENST00000556412 M0R2C6 588 aa16.9■□□□□ 0.3
VIPAS39-208ENST00000556412 HIP1O00291 1037 aa16.9■□□□□ 0.3
VIPAS39-208ENST00000556412 PLCG2P16885 1265 aa16.9■□□□□ 0.3
VIPAS39-208ENST00000556412 PICALMQ13492 652 aa16.9■□□□□ 0.3
VIPAS39-208ENST00000556412 ZMYM1Q5SVZ6 1142 aa16.9■□□□□ 0.3
VIPAS39-208ENST00000556412 MAP1SQ66K74 1059 aaPredicted RBP16.9■□□□□ 0.3
VIPAS39-208ENST00000556412 LDHDQ86WU2 507 aa16.9■□□□□ 0.3
VIPAS39-208ENST00000556412 RIOK1Q9BRS2 568 aaKnown RBP16.9■□□□□ 0.3
VIPAS39-208ENST00000556412 RHBDL3P58872 404 aa16.89■□□□□ 0.29
VIPAS39-208ENST00000556412 ZC3H15Q8WU90 426 aaKnown RBP16.89■□□□□ 0.29
VIPAS39-208ENST00000556412 ADAMTSL1Q8N6G6 1762 aa16.89■□□□□ 0.29
VIPAS39-208ENST00000556412 PPP4CP60510 307 aa16.89■□□□□ 0.29
VIPAS39-208ENST00000556412 TCP10Q12799 353 aa16.89■□□□□ 0.29
VIPAS39-208ENST00000556412 NFIAQ12857 509 aa16.89■□□□□ 0.29
VIPAS39-208ENST00000556412 CCDC129Q6ZRS4 1044 aa16.89■□□□□ 0.29
VIPAS39-208ENST00000556412 SULF1Q8IWU6 871 aa16.89■□□□□ 0.29
VIPAS39-208ENST00000556412 GPAA1O43292 621 aa16.88■□□□□ 0.29
VIPAS39-208ENST00000556412 CHMLP26374 656 aa16.88■□□□□ 0.29
VIPAS39-208ENST00000556412 USP5P45974 858 aa16.88■□□□□ 0.29
VIPAS39-208ENST00000556412 KRT26Q7Z3Y9 468 aa16.88■□□□□ 0.29
VIPAS39-208ENST00000556412 APOBEC3FQ8IUX4 373 aaKnown RBP16.88■□□□□ 0.29
VIPAS39-208ENST00000556412 TGFBRAP1Q8WUH2 860 aa16.88■□□□□ 0.29
VIPAS39-208ENST00000556412 CRNKL1Q9BZJ0 848 aaKnown RBP16.88■□□□□ 0.29
VIPAS39-208ENST00000556412 HELLSQ9NRZ9 838 aa16.88■□□□□ 0.29
VIPAS39-208ENST00000556412 MAST2Q6P0Q8 1798 aa16.88■□□□□ 0.29
VIPAS39-208ENST00000556412 ADM5C9JUS6 153 aa16.87■□□□□ 0.29
VIPAS39-208ENST00000556412 MCMDC2Q4G0Z9 681 aa16.87■□□□□ 0.29
VIPAS39-208ENST00000556412 TICAM2Q86XR7 235 aa16.87■□□□□ 0.29
VIPAS39-208ENST00000556412 CERS3Q8IU89 383 aa16.87■□□□□ 0.29
VIPAS39-208ENST00000556412 MAPKAPK5Q8IW41 473 aa16.87■□□□□ 0.29
VIPAS39-208ENST00000556412 PRKAB2O43741 272 aa16.86■□□□□ 0.29
VIPAS39-208ENST00000556412 CDC45O75419 566 aa16.86■□□□□ 0.29
VIPAS39-208ENST00000556412 WDHD1O75717 1129 aaPredicted RBP16.86■□□□□ 0.29
VIPAS39-208ENST00000556412 TNNI2P48788 182 aa16.86■□□□□ 0.29
VIPAS39-208ENST00000556412 TNFAIP1Q13829 316 aa16.86■□□□□ 0.29
VIPAS39-208ENST00000556412 CHADLQ6NUI6 762 aa16.86■□□□□ 0.29
VIPAS39-208ENST00000556412 CASC1Q6TDU7 716 aa16.86■□□□□ 0.29
VIPAS39-208ENST00000556412 USP48Q86UV5 1035 aa16.86■□□□□ 0.29
VIPAS39-208ENST00000556412 SDR42E1Q8WUS8 393 aa16.86■□□□□ 0.29
VIPAS39-208ENST00000556412 GLIS2Q9BZE0 524 aaPredicted RBP16.86■□□□□ 0.29
VIPAS39-208ENST00000556412 SLC4A4Q9Y6R1 1079 aa16.86■□□□□ 0.29
VIPAS39-208ENST00000556412 SCN4AP35499 1836 aa16.86■□□□□ 0.29
VIPAS39-208ENST00000556412 DOCK2Q92608 1830 aa16.86■□□□□ 0.29
VIPAS39-208ENST00000556412 APPP05067 770 aa16.86■□□□□ 0.29
VIPAS39-208ENST00000556412 RASA3Q14644 834 aa16.86■□□□□ 0.29
VIPAS39-208ENST00000556412 DLK2Q6UY11 383 aa16.86■□□□□ 0.29
VIPAS39-208ENST00000556412 STRBPQ96SI9 672 aaKnown RBP16.86■□□□□ 0.29
VIPAS39-208ENST00000556412 DEFB129Q9H1M3 183 aa16.86■□□□□ 0.29
VIPAS39-208ENST00000556412 DDX4Q9NQI0 724 aaKnown RBP16.86■□□□□ 0.29
VIPAS39-208ENST00000556412 PGAP2Q9UHJ9 254 aa16.86■□□□□ 0.29
VIPAS39-208ENST00000556412 PITPNM2Q9BZ72 1349 aa16.85■□□□□ 0.29
VIPAS39-208ENST00000556412 PRAMEF18Q5VWM3 479 aa16.85■□□□□ 0.29
VIPAS39-208ENST00000556412 CDC37L1Q7L3B6 337 aa16.85■□□□□ 0.29
VIPAS39-208ENST00000556412 ZNF589Q86UQ0 364 aaPredicted RBP16.85■□□□□ 0.29
VIPAS39-208ENST00000556412 ZSCAN29Q8IWY8 852 aaPredicted RBP16.85■□□□□ 0.29
VIPAS39-208ENST00000556412 RUFY2Q8WXA3 655 aa16.85■□□□□ 0.29
VIPAS39-208ENST00000556412 FAM198AQ9UFP1 575 aa16.85■□□□□ 0.29
VIPAS39-208ENST00000556412 SLC4A8Q2Y0W8 1093 aa16.84■□□□□ 0.29
VIPAS39-208ENST00000556412 IDI2Q9BXS1 227 aa16.84■□□□□ 0.29
VIPAS39-208ENST00000556412 TMEM39BQ9GZU3 492 aa16.84■□□□□ 0.29
VIPAS39-208ENST00000556412 SAP30BPQ9UHR5 308 aaKnown RBP16.84■□□□□ 0.29
VIPAS39-208ENST00000556412 FLT1P17948 1338 aa16.84■□□□□ 0.29
VIPAS39-208ENST00000556412 TOMM70O94826 608 aa16.84■□□□□ 0.29
VIPAS39-208ENST00000556412 ZFPM1Q8IX07 1006 aa16.84■□□□□ 0.29
VIPAS39-208ENST00000556412 SMC1BQ8NDV3 1235 aa16.84■□□□□ 0.29
VIPAS39-208ENST00000556412 DDRGK1Q96HY6 314 aa16.84■□□□□ 0.29
VIPAS39-208ENST00000556412 CCDC171Q6TFL3 1326 aa16.83■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms