RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 ATP2B3Q16720 1220 aa13.18□□□□□ -0.3
SHMT2-215ENST00000554656 OTUD7BQ6GQQ9 843 aa13.18□□□□□ -0.3
SHMT2-215ENST00000554656 WDR66Q8TBY9 1149 aa13.18□□□□□ -0.3
SHMT2-215ENST00000554656 ZKSCAN4Q969J2 545 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-215ENST00000554656 TMOD2Q9NZR1 351 aa13.18□□□□□ -0.3
SHMT2-215ENST00000554656 PTPN22Q9Y2R2 807 aa13.18□□□□□ -0.3
SHMT2-215ENST00000554656 PTPRFP10586 1907 aa13.17□□□□□ -0.3
SHMT2-215ENST00000554656 ADORA1P30542 326 aa13.17□□□□□ -0.3
SHMT2-215ENST00000554656 INPP5BP32019 993 aa13.17□□□□□ -0.3
SHMT2-215ENST00000554656 GTF2A2P52657 109 aa13.17□□□□□ -0.3
SHMT2-215ENST00000554656 SP3Q02447 781 aa13.17□□□□□ -0.3
SHMT2-215ENST00000554656 NFIAQ12857 509 aa13.17□□□□□ -0.3
SHMT2-215ENST00000554656 TAF1CQ15572 869 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-215ENST00000554656 CDC42EP5Q6NZY7 148 aa13.17□□□□□ -0.3
SHMT2-215ENST00000554656 FAM198AQ9UFP1 575 aa13.17□□□□□ -0.3
SHMT2-215ENST00000554656 FBXO3Q9UK99 471 aa13.17□□□□□ -0.3
SHMT2-215ENST00000554656 GTF3C3Q9Y5Q9 886 aa13.17□□□□□ -0.3
SHMT2-215ENST00000554656 PHIPQ8WWQ0 1821 aa13.17□□□□□ -0.3
SHMT2-215ENST00000554656 RFX7Q2KHR2 1363 aa13.17□□□□□ -0.3
SHMT2-215ENST00000554656 BTBD19C9JJ37 291 aa13.16□□□□□ -0.3
SHMT2-215ENST00000554656 IRF6O14896 467 aa13.16□□□□□ -0.3
SHMT2-215ENST00000554656 CT47B1P0C2W7 299 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-215ENST00000554656 RARSP54136 660 aaKnown RBP13.16□□□□□ -0.3
SHMT2-215ENST00000554656 PRPF38BQ5VTL8 546 aaKnown RBP13.16□□□□□ -0.3
SHMT2-215ENST00000554656 MIGA2Q7L4E1 593 aa13.16□□□□□ -0.3
SHMT2-215ENST00000554656 ERO1BQ86YB8 467 aa13.16□□□□□ -0.3
SHMT2-215ENST00000554656 ARMC5Q96C12 935 aa13.16□□□□□ -0.3
SHMT2-215ENST00000554656 API5Q9BZZ5 524 aaKnown RBP13.16□□□□□ -0.3
SHMT2-215ENST00000554656 EFCC1Q9HA90 598 aa13.16□□□□□ -0.3
SHMT2-215ENST00000554656 CEP126Q9P2H0 1117 aa13.16□□□□□ -0.3
SHMT2-215ENST00000554656 TNNQ9UQP3 1299 aa13.16□□□□□ -0.3
SHMT2-215ENST00000554656 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-215ENST00000554656 ATRNL1Q5VV63 1379 aa13.16□□□□□ -0.3
SHMT2-215ENST00000554656 SALL1Q9NSC2 1324 aa13.15□□□□□ -0.3
SHMT2-215ENST00000554656 TCP10Q12799 353 aa13.15□□□□□ -0.3
SHMT2-215ENST00000554656 PPIL2Q13356 520 aa13.15□□□□□ -0.3
SHMT2-215ENST00000554656 ZFPM1Q8IX07 1006 aa13.15□□□□□ -0.3
SHMT2-215ENST00000554656 FAM151AQ8WW52 585 aa13.15□□□□□ -0.3
SHMT2-215ENST00000554656 ARHGAP39Q9C0H5 1083 aa13.15□□□□□ -0.3
SHMT2-215ENST00000554656 COPRSQ9NQ92 184 aa13.15□□□□□ -0.3
SHMT2-215ENST00000554656 ZNF112Q9UJU3 913 aa13.15□□□□□ -0.3
SHMT2-215ENST00000554656 DOCK1Q14185 1865 aa13.14□□□□□ -0.31
SHMT2-215ENST00000554656 LDHBP07195 334 aaKnown RBP13.14□□□□□ -0.31
SHMT2-215ENST00000554656 NEFLP07196 543 aa13.14□□□□□ -0.31
SHMT2-215ENST00000554656 IL15P40933 162 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-215ENST00000554656 DCAF15Q66K64 600 aa13.14□□□□□ -0.31
SHMT2-215ENST00000554656 CCDC102BQ68D86 513 aa13.14□□□□□ -0.31
SHMT2-215ENST00000554656 INTS3Q68E01 1043 aaKnown RBP13.14□□□□□ -0.31
SHMT2-215ENST00000554656 ZNF341Q9BYN7 854 aa13.14□□□□□ -0.31
SHMT2-215ENST00000554656 ZFYVE28Q9HCC9 887 aa13.14□□□□□ -0.31
SHMT2-215ENST00000554656 PTCH2Q9Y6C5 1203 aa13.14□□□□□ -0.31
SHMT2-215ENST00000554656 MGAMO43451 1857 aa13.14□□□□□ -0.31
SHMT2-215ENST00000554656 GAKO14976 1311 aa13.13□□□□□ -0.31
SHMT2-215ENST00000554656 ZBTB22O15209 634 aa13.13□□□□□ -0.31
SHMT2-215ENST00000554656 CETPP11597 493 aa13.13□□□□□ -0.31
SHMT2-215ENST00000554656 SNAPC2Q13487 334 aa13.13□□□□□ -0.31
SHMT2-215ENST00000554656 MOGSQ13724 837 aa13.13□□□□□ -0.31
SHMT2-215ENST00000554656 RASGRF1Q13972 1273 aa13.13□□□□□ -0.31
SHMT2-215ENST00000554656 ERICH6BQ5W0A0 696 aa13.13□□□□□ -0.31
SHMT2-215ENST00000554656 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.13□□□□□ -0.31
SHMT2-215ENST00000554656 HOOK2Q96ED9 719 aa13.13□□□□□ -0.31
SHMT2-215ENST00000554656 DENND2AQ9ULE3 1009 aa13.13□□□□□ -0.31
SHMT2-215ENST00000554656 ADGRA2Q96PE1 1338 aa13.13□□□□□ -0.31
SHMT2-215ENST00000554656 SEMA3EO15041 775 aa13.12□□□□□ -0.31
SHMT2-215ENST00000554656 TLR2O60603 784 aa13.12□□□□□ -0.31
SHMT2-215ENST00000554656 SLURP2P0DP57 97 aa13.12□□□□□ -0.31
SHMT2-215ENST00000554656 CTGFP29279 349 aa13.12□□□□□ -0.31
SHMT2-215ENST00000554656 TIMM10P62072 90 aa13.12□□□□□ -0.31
SHMT2-215ENST00000554656 MTX1Q13505 466 aa13.12□□□□□ -0.31
SHMT2-215ENST00000554656 NOL9Q5SY16 702 aaKnown RBP13.12□□□□□ -0.31
SHMT2-215ENST00000554656 SH3BP5LQ7L8J4 393 aa13.12□□□□□ -0.31
SHMT2-215ENST00000554656 ZNF384Q8TF68 577 aa13.12□□□□□ -0.31
SHMT2-215ENST00000554656 ZNF333Q96JL9 665 aa13.12□□□□□ -0.31
SHMT2-215ENST00000554656 ZCCHC17Q9NP64 241 aaKnown RBP13.12□□□□□ -0.31
SHMT2-215ENST00000554656 USP40Q9NVE5 1235 aa13.12□□□□□ -0.31
SHMT2-215ENST00000554656 GNL3LQ9NVN8 582 aaKnown RBP13.12□□□□□ -0.31
SHMT2-215ENST00000554656 KCNH4Q9UQ05 1017 aa13.12□□□□□ -0.31
SHMT2-215ENST00000554656 CDK5RAP2Q96SN8 1893 aa13.12□□□□□ -0.31
SHMT2-215ENST00000554656 MYO5AQ9Y4I1 1855 aaKnown RBP13.12□□□□□ -0.31
SHMT2-215ENST00000554656 ATAD5Q96QE3 1844 aa13.11□□□□□ -0.31
SHMT2-215ENST00000554656 EN2P19622 333 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-215ENST00000554656 LACTBP83111 547 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-215ENST00000554656 PPATQ06203 517 aa13.11□□□□□ -0.31
SHMT2-215ENST00000554656 TFCP2Q12800 502 aa13.11□□□□□ -0.31
SHMT2-215ENST00000554656 ARHGAP45Q92619 1136 aa13.11□□□□□ -0.31
SHMT2-215ENST00000554656 DDX4Q9NQI0 724 aaKnown RBP13.11□□□□□ -0.31
SHMT2-215ENST00000554656 SUPT16HQ9Y5B9 1047 aaKnown RBP13.11□□□□□ -0.31
SHMT2-215ENST00000554656 SIPA1L1O43166 1804 aa13.11□□□□□ -0.31
SHMT2-215ENST00000554656 PDS5AQ29RF7 1337 aaKnown RBP13.11□□□□□ -0.31
SHMT2-215ENST00000554656 MAST2Q6P0Q8 1798 aa13.1□□□□□ -0.31
SHMT2-215ENST00000554656 A0A1B0GUL7 405 aa13.1□□□□□ -0.31
SHMT2-215ENST00000554656 PHF20L1A8MW92 1017 aa13.1□□□□□ -0.31
SHMT2-215ENST00000554656 SRGAP3O43295 1099 aa13.1□□□□□ -0.31
SHMT2-215ENST00000554656 WDHD1O75717 1129 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-215ENST00000554656 TRIM27P14373 513 aa13.1□□□□□ -0.31
SHMT2-215ENST00000554656 RGS3P49796 1198 aa13.1□□□□□ -0.31
SHMT2-215ENST00000554656 C17orf99Q6UX52 265 aa13.1□□□□□ -0.31
SHMT2-215ENST00000554656 PI16Q6UXB8 463 aa13.1□□□□□ -0.31
SHMT2-215ENST00000554656 XAGE2Q96GT9 111 aa13.1□□□□□ -0.31
SHMT2-215ENST00000554656 IDI2Q9BXS1 227 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms